Sequence of DPV Turnip mosaic virus
Turnip mosaic virus gene for polyprotein (CI, 6K2, NIa-VPg, NIa-Pro protein), partial cds, isolate: MD45J.
ACC No: AB233147
Dated: 2007-05-23 | Length: 1527 | CRC: -2038103200
ID AB233147; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC AB233147;
XX
DT 17-NOV-2006 (Rel. 89, Created)
DT 23-MAY-2007 (Rel. 91, Last updated, Version 2)
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DE Turnip mosaic virus gene for polyprotein (CI, 6K2, NIa-VPg, NIa-Pro
DE protein), partial cds, isolate: MD45J.
XX
KW .
XX
OS Turnip mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1527
RA Ohshima K.;
RT ;
RL Submitted (30-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN [2]
RA Tomitaka Y., Ohshima K.;
RT "A phylogeographical study of the Turnip mosaic virus population in East
RT Asia reveals an 'emergent' lineage in Japan";
RL Mol. Ecol. 15:4437-4457(2006).
XX
FH Key Location/Qualifiers
FH
FT source 1. .1527
FT /organism="Turnip mosaic virus"
FT /isolate="MD45J"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12230"
FT CDS <1. .>1527
FT /codon_start=1
FT /product="polyprotein"
FT /db_xref="GOA:A0P8M1"
FT /db_xref="UniProtKB/TrEMBL:A0P8M1"
FT /protein_id="BAF36917.1"
FT /translation="SDGISRHFMSEYGALEAVHHQNTNDMSKFLKLKGKWNKTLITRDV
FT LVICGVLGGGIWMIIQHLRTKISEPVIHEAKGKRQRQKLKFRNARDNKMGREVYGEDDA
FT IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATIDESPI
FT MDIALVQEHFGKIRMDLLGEDELEPDELRMNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT CDLHATIAGFPEREHELRQTGKAQPMDLSEVPKANTELIPVDHESSSMFRGLRDYNPIS
FT NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT LPIPDRDLLLIRLPKDIPPFPQKLGFRQPERGERICMVGSNFQTKSITSVVSETSTIMP
FT VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLY
FT TIEAHEWVKHWKYNTSAISWGSLNIQASQPAGLFKVSKLISDLDSTAVYAQ"
FT mat_peptide <1. .63
FT /gene="CI"
FT /product="CI protein"
FT mat_peptide 64. .222
FT /gene="6K2"
FT /product="6K2 protein"
FT mat_peptide 223. .798
FT /gene="NIa-VPg"
FT /product="NIa-VPg protein"
FT mat_peptide 799. .>1527
FT /gene="NIa-Pro"
FT /product="NIa-Pro protein"
XX
SQ Sequence 1527 BP; 493 A; 317 C; 362 G; 355 T; 0 other;
ab233147 Length: 1527 23-MAY-2007 Type: N Check: 5011 ..
1 tctgacggga tttctcgcca ttttatgagt gaatatggag cactcgaggc
51 agttcaccac caaaacacca acgacatgag caagttctta aagctgaagg
101 gcaaatggaa caaaacgctt atcacgcgtg atgtgttagt gatttgtgga
151 gttcttggag gtggaatatg gatgatcatc caacacctgc gtacgaagat
201 ctccgaaccc gtgatccacg aggcaaaagg caagaggcag agacagaagt
251 tgaagtttcg caatgcccgc gacaacaaaa tgggtaggga ggtctacgga
301 gaagacgacg ccattgaaca cttctttgga gatgcctaca caaagaaggg
351 aaagagtaaa ggcagaactc gtggcctcgg ccataaaaac aggaaattca
401 tcaatatgta tggattcgat cctgaagact tctctgcagt tagattcgta
451 gatccactca ctggggcaac gatagatgaa agtccaatca tggacatagc
501 ccttgtgcag gaacattttg gaaaaatacg gatggattta cttggagaag
551 acgaactgga acccgatgag ttgcgaatga ataagacaat tcaggcttac
601 tacatgaata acaaaacagg taaagccctg aaagtggatt tgacaccaca
651 cataccacta aaggtatgtg accttcatgc aacaattgct ggtttcccgg
701 aacgagaaca cgaactgagg caaactggaa aagctcagcc tatggactta
751 agtgaagtac ctaaagctaa cactgagcta attccagttg accatgaaag
801 tagctccatg tttagagggt tgcgcgacta caacccaata tccaataaca
851 tttgtcatct tacaaatgtg tcagatggag catcaaattc gttatatggg
901 gttggttttg gaccactcat attaacgaac cggcatctct ttgaaaggaa
951 taatggtgaa ctcgtgataa agtcaagaca tggtgagttt gtgatcaaga
1001 acacgactca gctacacttg ctaccgattc cggacagaga ccttctgcta
1051 atccgactac ctaaagacat tccacccttc ccgcaaaaac tgggatttag
1101 acaacctgag aggggtgaga ggatctgtat ggtaggttcc aactttcaaa
1151 caaagagcat tacgagtgta gtttctgaga ctagcacaat aatgccagtg
1201 gagaatagcc aattttggaa gcactggatt agcactaagg atggccaatg
1251 tggaagcccg atggtgagca caaaggatgg aaaaatactt gggctgcaca
1301 gcctggcaaa tttccaaaat tccatcaact actttgctgc cttcccagat
1351 gattttgctg agaagtacct ctacactatt gaggcacatg agtgggtcaa
1401 gcattggaag tataacacca gtgcaattag ttggggctcc ttaaatatac
1451 aagcatcgca gccggcgggc ttatttaaag tgagcaaact aatatcagac
1501 cttgacagta cagcggttta tgcacaa