Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein (CI, 6K2, NIa-VPg, NIa-Pro protein), partial cds, isolate: MD966J.

ACC No: AB233152

Dated: 2007-05-23 | Length: 1527 | CRC: -134621227

                
ID   AB233152; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB233152;
XX
DT   17-NOV-2006 (Rel. 89, Created)
DT   23-MAY-2007 (Rel. 91, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein (CI, 6K2, NIa-VPg, NIa-Pro
DE   protein), partial cds, isolate: MD966J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (30-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomitaka Y., Ohshima K.;
RT   "A phylogeographical study of the Turnip mosaic virus population in East
RT   Asia reveals an 'emergent' lineage in Japan";
RL   Mol. Ecol. 15:4437-4457(2006).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="MD966J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1. .>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A0P8M6"
FT                   /db_xref="UniProtKB/TrEMBL:A0P8M6"
FT                   /protein_id="BAF36922.1"
FT                   /translation="SDGISRHFMSEYGALEAVHHQNTNDMSKFLKLKGKWNKTLITRDV
FT                   LVICGVLGGGIWMIIQHLRMKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGEDDV
FT                   IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATIDESPI
FT                   MDIALVQEHFGKIRMDLLGEDELEPDELRMNKTIQAYYMNNKTGKALKVDLTPHVPLKV
FT                   CDLHATIAGFPEREYELRQTGKAQPMDLSEVPKANTELIPVDHESSSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDIPPFPQKLGFRQPERGERICMVGSNFQTKSITSVVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLY
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPAGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1. .63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64. .222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223. .798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799. .>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 485 A; 319 C; 371 G; 352 T; 0 other;

ab233152 Length: 1527  23-MAY-2007  Type: N  Check: 3953  ..

       1  tctgacggga tttctcgcca ttttatgagt gagtatggag cgctcgaggc
      51  agttcaccat caaaacacca acgacatgag caagttctta aagctgaagg
     101  gcaaatggaa caaaacgctt atcacgcgtg atgtgttagt gatttgcggg
     151  gttcttggag gtggaatatg gatgatcatc caacacctgc gtatgaagat
     201  ctccgaaccc gtgacccacg aggcaaaagg caagaggcag agacagaagt
     251  tgaagtttcg caatgcccgc gacaacaaaa tgggtaggga ggtttacggg
     301  gaagacgacg tcatcgaaca cttctttgga gatgcctaca caaagaaggg
     351  aaagagtaaa ggcagaactc gtggcctcgg ccataaaaac aggaaattca
     401  tcaatatgta tggatttgat cctgaagact tctctgcagt tagattcgta
     451  gacccactca caggggcaac gatagatgaa agtccaatca tggatatagc
     501  ccttgtgcag gaacatttcg gaaaaatacg gatggatttg cttggagaag
     551  acgaactgga acccgacgag ttgcgaatga acaagacgat tcaggcttac
     601  tacatgaata acaaaacagg taaagccctg aaagtggatt tgacaccaca
     651  cgtaccacta aaggtatgtg accttcatgc aacaattgct ggtttcccgg
     701  aacgagaata cgaactgagg caaactggaa aagctcagcc tatggactta
     751  agtgaagtac ctaaagctaa cactgagcta attccagttg accatgaaag
     801  tagctccatg tttagagggt tgcgcgacta caatccaata tccaataaca
     851  tttgtcatct tacaaatgtg tcagatggag catcaaattc gttgtatggg
     901  gttggttttg gaccgctcat attaacgaac cggcatctct ttgaaaggaa
     951  taatggtgaa ctcgtgataa agtcaagaca tggtgagttt gtgatcaaga
    1001  acacgactca gctacacttg ctaccgattc cggacaggga ccttctgcta
    1051  atccgactac ctaaagacat tccacccttc ccgcaaaaac tgggatttag
    1101  acaacctgag aggggtgaga ggatctgtat ggtaggttcc aactttcaaa
    1151  caaagagcat tacgagtgta gtttctgaga ctagcacaat aatgccagtg
    1201  gagaatagcc aattttggaa gcactggatt agcaccaagg atggccaatg
    1251  tggaagcccg atggtgagca caaaggatgg aaaaatactt gggctgcaca
    1301  gcctggcaaa tttccaaaat tccatcaact actttgctgc cttcccagat
    1351  gattttgctg agaagtacct ctacactatt gaggcacacg agtgggtcaa
    1401  gcattggaag tataacacca gtgcaattag ttggggctcc ctaaatatac
    1451  aagcatcgca gccagcgggc ttatttaaag tgagcaaact aatatcagac
    1501  cttgacagta cagcggttta tgcacaa