Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein (CI, 6K2, NIa-VPg, NIa-Pro protein), partial cds, isolate: OD15J.

ACC No: AB233167

Dated: 2007-05-23 | Length: 1527 | CRC: 585582761

                
ID   AB233167; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB233167;
XX
DT   17-NOV-2006 (Rel. 89, Created)
DT   23-MAY-2007 (Rel. 91, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein (CI, 6K2, NIa-VPg, NIa-Pro
DE   protein), partial cds, isolate: OD15J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (30-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomitaka Y., Ohshima K.;
RT   "A phylogeographical study of the Turnip mosaic virus population in East
RT   Asia reveals an 'emergent' lineage in Japan";
RL   Mol. Ecol. 15:4437-4457(2006).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="OD15J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1. .>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A0P8P1"
FT                   /db_xref="UniProtKB/TrEMBL:A0P8P1"
FT                   /protein_id="BAF36937.1"
FT                   /translation="TDGISRHFMSEYGALEAVHHQNTSDMSKFLKLKGKWNKTLITRDV
FT                   LVICGVLGGGIWMIIQHLRSKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDA
FT                   IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATIDESPI
FT                   MDIALVQEHFGKIRMDLLGEDELEPDELRMNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPEREHELRQTGKAQPMDLSEVPKANIELVPVDHESSSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDIPPFPQKLGFRQPERGERICMVGSNFQTKSITSIVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPAGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1. .63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64. .222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223. .798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799. .>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 498 A; 319 C; 360 G; 350 T; 0 other;

ab233167 Length: 1527  23-MAY-2007  Type: N  Check: 5021  ..

       1  accgatggaa tatctcggca tttcatgagt gagtatggag ctcttgaggc
      51  agttcaccat caaaacacca gcgacatgag caaattcctc aagctgaagg
     101  gcaaatggaa caaaacgctt atcacgcgtg atgtgttagt aatttgtgga
     151  gttcttggag gtggaatatg gatgatcatc caacacctgc gatcaaagat
     201  ttccgaaccc gtaacccacg aagcgaaagg caagaggcaa agacagaaac
     251  taaagtttcg caatgcccga gacaacaaga tgggtagaga agtgtacgga
     301  gatgatgatg ccatagagca tttctttggt gatgcctaca caaagaaggg
     351  aaagagtaaa ggcagaactc gtggcctcgg ccataaaaac aggaaattca
     401  tcaatatgta tggattcgat cctgaagact tctctgcagt tagattcgta
     451  gatccactca caggggcaac gatagatgaa agtccaatca tggacatagc
     501  ccttgtgcag gaacatttcg gaaaaatacg gatggattta cttggagaag
     551  acgaactgga acccgatgag ttgcgaatga ataagacgat tcaggcttac
     601  tacatgaata acaaaacagg taaagccctg aaagtggatt tgacaccaca
     651  cataccacta aaggtatgtg accttcatgc aacaattgct ggtttcccgg
     701  aacgagaaca cgaactgagg caaactggaa aagctcagcc catggactta
     751  agtgaagtac ccaaagctaa cattgagcta gttccagttg accatgaaag
     801  tagctccatg tttagagggt tgcgcgacta caacccaata tctaataaca
     851  tttgtcatct tacaaatgtg tcagatggag catcaaattc gttgtatggg
     901  gttggttttg gaccactcat attaacgaac cggcatctct ttgaaaggaa
     951  taatggtgaa cttgtgataa agtcaagaca tggtgagttt gtgattaaga
    1001  acacgactca gctacacttg ctaccgattc cggacaggga ccttctgcta
    1051  atccgactac ctaaagacat tccacccttc ccgcaaaaac tgggattcag
    1101  acaacctgag aggggtgaga ggatctgtat ggtaggttcc aactttcaaa
    1151  caaagagcat tacgagtata gtttctgaga ctagcacgat aatgccagtg
    1201  gagaatagcc aattttggaa gcactggatt agcaccaagg atggccaatg
    1251  tggaagtccg atggtgagca caaaggatgg aaaaatactt gggctacaca
    1301  gcctggcaaa tttccaaaat tccatcaact actttgctgc cttcccagat
    1351  gattttgctg agaagtacct ccacactatt gaggcacacg agtgggtcaa
    1401  gcattggaag tataacacca gtgcaattag ttggggctcc ctaaatatac
    1451  aagcatcgca gccagcgggc ttatttaaag tgagcaaact aatatcagac
    1501  ctcgacagca cagcagttta cgcgcaa