Sequence of DPV Tomato leaf curl Java virus
Tobacco leaf curl Indonesia virus C1, V2, V1 genes for replication-associated protein, putative V2 protein, coat protein, partial and complete cds.
ACC No: AB246171
Dated: 2009-02-04 | Length: 1474 | CRC: -725873296
ID AB246171; SV 1; linear; genomic DNA; STD; VRL; 1474 BP.
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AC AB246171;
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DT 22-JAN-2006 (Rel. 86, Created)
DT 04-FEB-2009 (Rel. 99, Last updated, Version 3)
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DE Tobacco leaf curl Indonesia virus C1, V2, V1 genes for
DE replication-associated protein, putative V2 protein, coat protein, partial
DE and complete cds.
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KW .
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OS Tobacco leaf curl Indonesia virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-1474
RA Hidayat S.H., Orawan C., Noor A.;
RT ;
RL Submitted (05-JAN-2006) to the EMBL/GenBank/DDBJ databases.
RL Contact:Sri Hendrastuti Hidayat Bogor Agricultura University, Plant
RL Protection; Jl Kamper, Dramaga, Bogor, West Java, Indonesia, Bogor, West
RL Java 16680, Indonesia
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RN [2]
RA Hidayat S.H., Orawan C., Noor A.;
RT "Genetic diversity of geminivirus in Indonesia";
RL Unpublished.
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FH Key Location/Qualifiers
FH
FT source 1. .1474
FT /organism="Tobacco leaf curl Indonesia virus"
FT /mol_type="genomic DNA"
FT /country="Indonesia:Jember, East Java"
FT /isolation_source="Tobacco"
FT /collected_by="Sri Hendrastuti Hidayat"
FT /collection_date="1999"
FT /clone="pTobT8"
FT /PCR_primers="fwd_name: PAL1v1978, fwd_seq:
FT gcatctgcaggcccacatygtcttyccngt, rev_name: PAR1c715,
FT rev_seq: gatttctgcagttdatrttytcrtccatcca"
FT /db_xref="taxon:366679"
FT CDS complement(<1. .669)
FT /codon_start=1
FT /transl_table=1
FT /gene="C1"
FT /product="replication-associated protein"
FT /db_xref="GOA:Q2MH19"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:Q2MH19"
FT /protein_id="BAE78397.1"
FT /translation="MAPPKRFLINAKNYFLTYPQCSLTKEEALSQLQNLNTPTNKKIKI
FT CRELHEDGSPHLHVLIQFEGKYKCQNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKSYID
FT KDGDTLEWGEFQVDGRSARGGQQTANDTAAKALNSGSAEAALAIIREELPKDFIFQYHN
FT IKANLDRIFTPRAEVFVCPFLSSSFDQVPEELECWVSENVRDAAARPWRPVSIVIEGES
FT R"
FT repeat_region 601. .607
FT TATA_signal 729. .734
FT stem_loop 801. .822
FT CDS 952. .1302
FT /codon_start=1
FT /transl_table=1
FT /gene="V2"
FT /product="putative V2 protein"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:Q2MH21"
FT /protein_id="BAE78398.1"
FT /translation="MWDPLVNEFPETVHGLRCMLAVKYLQLVEATYSPDTIGYDLVRDL
FT ISVIRARNYVEASRRYSHFHSRLEGTSSSELRHTRDEPCCCPHCPRHQQKKDMDQQAHV
FT SQAQNVQNVQKP"
FT CDS 1112. .>1474
FT /codon_start=1
FT /transl_table=1
FT /gene="V1"
FT /product="coat protein"
FT /db_xref="GOA:Q2MH20"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:Q2MH20"
FT /protein_id="BAE78399.1"
FT /translation="MSKRPADIVISTPASKVRRRLNFDTPAMSRAAAPTVLVTNKRRTW
FT TNRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFESRPDVSHVGKVCCXTDVTRGLGLTH
FT RTGKRFCVKPVYIMGKV"
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SQ Sequence 1474 BP; 385 A; 328 C; 332 G; 428 T; 1 other;
ab246171 Length: 1474 04-FEB-2009 Type: N Check: 3209 ..
1 acggctctca ccctctatga caatactaac aggtctccat ggccgcgcag
51 cggcatccct tacgttttcg gaaacccagc actcaagttc ttctggaact
101 tgatcgaaag aagaagaaag aaatggacaa acaaaaacct ctgcacgagg
151 tgtaaaaatc ctatctaaat tagctttaat attatgatat tgaaaaataa
201 aatctttagg gagctcctct ctaataatag ctaaagctgc ttcggctgaa
251 cctgaattta gggcctttgc agctgtgtcg ttagccgtct gttgacctcc
301 tcgagcactt cttccgtcga cctggaattc tccccattcc agtgtgtctc
351 cgtccttgtc gatataggac ttgacgtcgg agcttgattt agctccctga
401 atgttcggat ggaaatgtgc tgacctggta ggggatgtaa ggtcgaagaa
451 tctgttattt tggcacttgt atttcccttc gaactggata agcacgtgca
501 gatgagggct cccatcttca tggagttctc tgcagatttt gattttttta
551 tttgttgggg tgtttaggtt ttgtaattgg gaaagtgctt cttctttagt
601 gagagagcac tgtgggtatg tgaggaaata atttttggca tttattaaaa
651 aacgtttggg aggtgccatt tgacttggtc aatcgggtct caacaaactt
701 gcgttagcaa tcggggaatg ggtcccaata tatagtgagg acctaaatgg
751 cattattgta attctcgaaa gtaattcaaa tttcaaattt tgaatccaat
801 agcggccatc cgtataatat taccggatgg ccgcgatttt tttaaagtgg
851 tcccccccac taacaaatgt cccccaatca gaacgcgccc tcaaagctaa
901 attattaact ggtcccctat ttatacttag tctccaagta ttatgttaaa
951 catgtgggat cccctcgtaa acgaattccc agagactgtt cacggtctac
1001 ggtgtatgct agccgtaaaa tatcttcaat tagttgaagc tacgtattct
1051 cctgatacga ttggatacga tctcgtacgc gatttaattt cagtaattcg
1101 tgctcgcaat tatgtcgaag cgtcccgccg atatagtcat ttccactccc
1151 gcctcgaagg tacgtcgtcg tctgaacttc gacacacccg cgatgagccg
1201 tgctgctgcc cccactgtcc tcgtcaccaa caaaagaagg acatggacca
1251 acaggcccat gtatcgcaag cccagaatgt acagaatgta cagaagccct
1301 gatgtgccca aaggttgtga aggcccatgt aaggtccagt cttttgagtc
1351 tagacccgat gttagtcacg tgggtaaggt ctgttgtana actgacgtca
1401 ctaggggttt aggtttaaca cataggacgg gtaagaggtt ttgcgttaag
1451 cccgtctaca taatgggcaa ggtc