Sequence of DPV Chrysanthemum stunt viroid

Chrysanthemum stunt viroid genomic RNA, complete genome, isolate Dahlia spp, note: type2.

ACC No: AB255880

Dated: 2009-01-27 | Length: 354 | CRC: -1824775023

                
ID   AB255880; SV 1; circular; genomic RNA; STD; VRL; 354 BP.
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AC   AB255880;
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DT   21-SEP-2006 (Rel. 89, Created)
DT   27-JAN-2009 (Rel. 99, Last updated, Version 2)
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DE   Chrysanthemum stunt viroid genomic RNA, complete genome, isolate Dahlia
DE   spp, note: type2.
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KW   .
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OS   Chrysanthemum stunt viroid
OC   Viroids; Pospiviroidae; Pospiviroid.
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RN   [1]
RP   1-354
RA   Nakashima A., Hosokawa M., Maeda S., Yazawa S.;
RT   ;
RL   Submitted (06-APR-2006) to the EMBL/GenBank/DDBJ databases.
RL   Contact:Akiko Nakashima Kyoto University, Laboratory of Vegetable and
RL   Ornamental Horticulture, Department of Agronomy and Horticultural Science,
RL   Graduate School of Agriculture; Kitashirakawaoiwakecho, Sakyo-ku, Kyoto,
RL   Kyoto 6068502, Japan URL    :http://www.hort.kais.kyoto-u.ac.jp/
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RN   [2]
RA   Nakashima A., Hosokawa M., Maeda S., Yazawa S.;
RT   "First detection of chrysanthemum stunt viroid in dahlia plants";
RL   Unpublished.
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DR   RFAM; RF00362; Pospi_RY.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .354
FT                   /organism="Chrysanthemum stunt viroid"
FT                   /host="Dahlia spp."
FT                   /strain="Dahlia isolate"
FT                   /mol_type="genomic RNA"
FT                   /country="Japan:Nara, Haibara"
FT                   /isolation_source="Dahlia spp. cultivar 'Hakuyo'"
FT                   /collection_date="18-Oct-2005"
FT                   /PCR_primers="fwd_name: CSVS1, fwd_seq:
FT                   aaagaaatgaggcgaagaag, rev_name: CSVC1, rev_seq:
FT                   ttctttcaaagcagcagggt"
FT                   /note="type2"
FT                   /db_xref="taxon:12897"
FT   misc_feature    1. .354
FT                   /note="complete genome of Chrysanthemum stunt viroid"
FT   primer_bind     36. .75
FT                   /experiment="RT-PCR"
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SQ   Sequence 354 BP; 71 A; 98 C; 91 G; 94 T; 0 other;

ab255880 Length: 354  27-JAN-2009  Type: N  Check: 4063  ..

       1  cgggacttac ttgtggttcc tgtggtgcac tcctgaccct gctgctttga
      51  aagaaaaaga aatagggcga agaagtcctt cagggatccc cggggaaacc
     101  tggaggaagt ccgacgagat cgcggctggg gcttaggacc ccactcctgc
     151  gagacaggag taatcctaga cagggttttc acccttcctc tagtttcctt
     201  cctctcctgg agaggtcttc tgccctagcc cggtcttcga agcttccttt
     251  ggctactacc cggtggaaac aactgaagct tcaacgcctt tttttcctat
     301  cttctttagc accgggctag ggagtaagcc cgtggaacct tagttttgtt
     351  ccct