Sequence of DPV Turnip yellow mosaic virus

Turnip yellow mosaic virus CP gene for coat protein, complete cds, isolate: B-3.

ACC No: AB358972

Dated: 2008-12-01 | Length: 570 | CRC: 1075120332

                
ID   AB358972; SV 1; linear; genomic RNA; STD; VRL; 570 BP.
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AC   AB358972;
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DT   10-SEP-2007 (Rel. 93, Created)
DT   01-DEC-2008 (Rel. 98, Last updated, Version 4)
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DE   Turnip yellow mosaic virus CP gene for coat protein, complete cds, isolate:
DE   B-3.
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KW   .
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OS   Turnip yellow mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tymoviridae;
OC   Tymovirus.
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RN   [1]
RP   1-570
RA   Ohki S.T.;
RT   ;
RL   Submitted (24-AUG-2007) to the EMBL/GenBank/DDBJ databases.
RL   Contact:Satoshi T Ohki Graduate School of Life and Environmental, Osaka
RL   Prefecture University, Division of Applied Biosiences; 1-1 Gakuen-cho,
RL   Naka-ku, Sakai, Osaka 599-8531, Japan
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RN   [2]
RA   Kirino N., Inoue K., Tanina K., Yamazaki Y., Ohki S.T.;
RT   "Turnip yellow mosaic virus isolated from Chinese cabbage in Japan";
RL   J. Gen. Plant Pathol. 74:331-334(2008).
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FH   Key             Location/Qualifiers
FH
FT   source          1. .570
FT                   /organism="Turnip yellow mosaic virus"
FT                   /isolate="B-3"
FT                   /mol_type="genomic RNA"
FT                   /country="Japan:Okayama"
FT                   /isolation_source="Brassica rapa L. subsp. pekinensis cv.
FT                   Kigokoro85 cultured in Okayama"
FT                   /collection_date="2005"
FT                   /PCR_primers="fwd_name: CL-3, fwd_seq:
FT                   ggtctagacatatggttccgatgaccctcgg, rev_name: TALL COMP,
FT                   rev_seq: ccctcgagtctgaattgcttc"
FT                   /note="cDNA fragment of nucleotide sequence for coat
FT                   protein gene"
FT                   /note="host: Cruciferae"
FT                   /db_xref="taxon:12154"
FT   CDS             1. .570
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="BAF79589.1"
FT                   /translation="MEIDKELAPQDRTVTLATVLPTIPGPPPLTIKQPFQSEVLFAGTK
FT                   DAEASLTIANIDSVSTLTTFYRHASLESLWVTIHPTLQAPAFPTTIGVCWVPANSPITP
FT                   TQITKTYGGQIFCIGGAINTLSPLIVKCPLEMMNPRVKDSIQYLDSPKLLISVTAQPTA
FT                   PPASTCIITVSGTLSMHSPLITDTST"
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SQ   Sequence 570 BP; 135 A; 229 C; 89 G; 117 T; 0 other;

ab358972 Length: 570  01-DEC-2008  Type: N  Check: 6057  ..

       1  atggaaatcg acaaagaact cgccccccaa gaccgcaccg tcactctcgc
      51  caccgtttta ccaactatcc ccggcccacc accgctcacc atcaaacaac
     101  cgttccagtc tgaggttctg tttgccggaa ccaaagacgc cgaggcttcc
     151  ctcaccatcg ccaacatcga cagcgtttcc accctcacca ccttctaccg
     201  tcatgcatct ctggaatcac tctgggtcac catccatccc accttgcaag
     251  ccccagcttt ccccacgaca atcggtgttt gctgggtacc cgccaattcc
     301  ccaatcaccc ccacccagat caccaagacc tatggcggcc agatcttctg
     351  cattggcggc gccatcaaca ctctctcacc cctcatcgtc aagtgcccac
     401  ttgaaatgat gaacccccgg gtcaaagatt caattcagta ccttgactca
     451  cccaaactcc tcatctccgt caccgctcaa cccaccgctc cccccgcatc
     501  gacctgcata ataactgtat caggaactct ctcgatgcac tctccgctca
     551  tcacggacac ttccacctaa