Sequence of DPV Plantago asiatica mosaic virus
Plantago asiatica mosaic virus genomic RNA, complete genome, strain: Li1.
ACC No: AB360790
Dated: 2008-03-01 | Length: 6102 | CRC: -937930977
ID AB360790; SV 1; linear; genomic RNA; STD; VRL; 6102 BP.
XX
AC AB360790;
XX
DT 01-MAR-2008 (Rel. 95, Created)
DT 01-MAR-2008 (Rel. 95, Last updated, Version 1)
XX
DE Plantago asiatica mosaic virus genomic RNA, complete genome, strain: Li1.
XX
KW .
XX
OS Plantago asiatica mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC Potexvirus.
XX
RN [1]
RP 1-6102
RA Namba S., Oshima K., Yamaji Y., Komatsu K., Kagiwada S.;
RT ;
RL Submitted (09-SEP-2007) to the EMBL/GenBank/DDBJ databases.
RL Contact:Shigetou Namba The University of Tokyo, Graduate School of
RL Agricultural and Life Sciences, Department of Agricultural and
RL Environmental Biology, Laboratory of Plant Pathology; 1-1-1 Yayoi,
RL Bunkyo-ku, Tokyo 113-8657, Japan
XX
RN [2]
RA Komatsu K., Yamaji Y., Ozeki J., Hashimoto M., Kagiwada S., Takahashi S.,
RA Namba S.;
RT "Nucleotide sequence analysis of seven Japanese isolates of Plantago
RT asiatica mosaic virus (PlAMV): a unique potexvirus with significantly high
RT genomic and biological variability within the species";
RL Arch. Virol. 153:193-198(2008).
XX
FH Key Location/Qualifiers
FH
FT source 1. .6102
FT /organism="Plantago asiatica mosaic virus"
FT /strain="Li1"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:28354"
FT CDS 87. .4229
FT /codon_start=1
FT /transl_table=1
FT /gene="RdRp"
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="BAG12123.1"
FT /translation="MSNVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTP
FT EAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRH
FT FHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALF
FT AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQL
FT EWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL
FT PAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVN
FT YFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPI
FT TLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATATVEATLAQQSE
FT TPDEHQSLSLKCSTLPEHQLWALHELGNARCGGPLLPKGPAKLTRAEPCPDLPAEPQAV
FT PEPPHKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRE
FT LPRADGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRES
FT QVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLD
FT WLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGD
FT PRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKV
FT TYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEV
FT LYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRV
FT APPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKD
FT EALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRC
FT AEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIA
FT SFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSKPSYANDF
FT TAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFD
FT ANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQ
FT ERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAY
FT SLGDDLQDLLSPHQARLHQVTVRDLVKFGGSSFLNSD"
FT CDS 4231. .4923
FT /codon_start=1
FT /transl_table=1
FT /gene="TGBp1"
FT /product="triple gene block protein1"
FT /protein_id="BAG12124.1"
FT /translation="MDIVISALTSNDFQRTNIPISKPLVVHAVAGAGKTTLIQNLLPDH
FT PNLSAQTAGTPQSPNLTGAYIRKLTCPESNKLNLLDEYAALQPLKGSWDVVLADPLQHS
FT GLALRPHFVKSISHRLCPETTKLISKLICPCSSSRSDTSSIQFSGLFEGPLLGTIIALD
FT STTQALLQAHGAPFLCPTAALGLEFDTVTVVSATPLADVQDKVGLYISLSRHRAQLHVR
FT SPPPHPTY"
FT CDS 4889. .5221
FT /codon_start=1
FT /transl_table=1
FT /gene="TGBp2"
FT /product="triple gene block protein2"
FT /protein_id="BAG12125.1"
FT /translation="MSGAHHLTPPTDYGKPVLAVSIGISLALLVYSATRSTLPHVGDNL
FT HALPHGGRYVDGTKSISYFSPNHSKSRDPLPLAFLTVLILSGLILLLSRRGRHTTHCPC
FT CGKSHA"
FT CDS 5025. .5390
FT /codon_start=1
FT /transl_table=1
FT /gene="TGBp3"
FT /product="triple gene block protein3"
FT /protein_id="BAG12126.1"
FT /translation="MHSHTEAGTSTEPSPSVTSAPTTPSPGTHFHSPFSQSSSSRDSYF
FT YYLAAAATLLTALAVVSLTPKPGCTVVITGHSTIIQGQCDFRPELVLAAHPRGLSLELF
FT AKFKQTLHHGTQPSSDL"
FT CDS 5362. .5985
FT /codon_start=1
FT /transl_table=1
FT /gene="CP"
FT /product="coat protein"
FT /protein_id="BAG12127.1"
FT /translation="MALNQAPTSDALNAMTFAVSSPSVPTAEELATITQGLTTLGVPAD
FT SLLSHALAVVNACFDAGSSAFVTLSGPSPTATISLAQIAGVVKVTTTLRKFCRFYAKII
FT WNARLSRNLPPAGFARANIKFEHRWAGFDFFDGLLNPAALEPIGGLTRTPTPDEVTANE
FT TARSLNLFEARASSSNLASTSTQFTRGHLSNTAPQVQFLPSPSD"
XX
SQ Sequence 6102 BP; 1544 A; 2232 C; 1236 G; 1090 T; 0 other;
ab360790 Length: 6102 01-MAR-2008 Type: N Check: 4343 ..
1 gaaaacaaac ctacacaaac caaacgtcaa cagacataca cggccaaaca
51 gtggtaaccg atttgctcga aagctaggtt aacggtatgt caaacgttcg
101 gaacgtcttc gcccaactca cagacccctc cctgaaagcc gtcatccaag
151 atgaagccta caggcaccta aaacgtgagc tagcacaaac ccgtcacaac
201 aacccctttg cccaaacacc tgaagctgcc gacgcgcttg aggcactcgg
251 tatcaactcc cacccctacg ccatcacccc ccacacccac gccgccgcca
301 aggcaattga gtccgacctc tacgaggtag tttcccacta cctcccaaaa
351 gagaaccccg tctccttcct cttcatgaaa cccgccaagc tcagacactt
401 ccaccgagga cccactcacg gggaccactt cctcaacgcc cacgtggaac
451 ccaaagatgt acccagatac ccacaggaca cgatcatcaa acgcctggaa
501 aacatcccca ccagcatagc cttcatgggg gacacccttc acttcctcag
551 cccatccttc gtcaccgccc tcttcgcaca ctccccaaaa ctccagaccc
601 tgtacgcgac actcgtcctt cccccagaag ccctctacag actcaggtca
651 ctctacccgc aaatctacac actgacctac tccgaggacg ggttcatgta
701 catcccgggt ggccatgcgg gcgcttcgta cttccacaat tactcccagc
751 tcgaatggct cacagtggga cacctcacca cccccggaca aatcaccgtg
801 accgcccaaa ggctggaaac caagggggcg aaccaccttt tcatcttcca
851 aaggggcaac tacctcaccc ctgaaagacg taccttcacc accacggaac
901 actacgtcac tgtcccggac atcttcctcc cagccaagta caactgcaga
951 acgcccattt ccaagacaat catgatgcag atgttcttct acattaagtc
1001 cgtcaaggag gctaaagagc gtgacatctg ggcaaaattc agacagctca
1051 tcagcaccaa ggagctccaa cattaccagc catccgagat caccctgctg
1101 gtcaactact tcgaattcac cgcctccctg gattcccaca catgcttcga
1151 agacatactt tccgggaatc tcctacagcg aatgctccgg ccgctgaggt
1201 caggcctcac acaactgctg gacttcttca gagggcgccc ctccttcgtc
1251 aaactaatca aggccctaga ctggcaaccc atcaccttgg aatttcccgt
1301 acggaaggtc aacacccacc tccggggtgc cccagggttc gacagcccat
1351 ttgcacgacc ccaaccggtg aatcccgacg acgcagagac cacccaaagc
1401 ttccaagcct tttgccaggc caccgctact gttgaggcaa ccctggcaca
1451 gcaatccgag acgcccgatg agcaccaaag cctcagcctc aaatgctcca
1501 cccttccgga acaccagctc tgggccctgc atgaacttgg aaacgcaaga
1551 tgcgggggcc cactcctacc aaagggacct gccaaactca caagggcgga
1601 gccctgcccg gacctccccg cagagcccca agcagtccca gagcccccgc
1651 ataaaaccac ccagagttca gacctccccc acccccaaga cccctccacc
1701 cttccctggg tcgcttggct ccctaaactc aacgccctag gcttcgaagc
1751 cctcgagatt cagacagacc cgtccacggg agagatgatc atgccaatca
1801 ctgacacaag agagcttccc agagcagacg gccacgctca ctggcaaggc
1851 ccagacatgg agcggatcct ctccaccctc cgaggcctca acaggtaccc
1901 cacaccgtgg aaccctgacc gagccagagc caaggccttc acctccgacg
1951 ttaaaaattc ccgaaccggc aaggcactgc accgggagtc acaagtctgg
2001 aaggaaaccc aaacgatgtt aacggaaaac tcgcagacca acctcgccat
2051 ctctgtcatc catggcgcag gaggctcagg caaaagccag gccctccaaa
2101 cactcctccg gcagtacccc aaccttccca tcgaggtcgt ccttccaacc
2151 aacgagctca ggctggactg gctaaagaag ctcccccaca acccccctga
2201 acaattcaga acgttcgaga gagccttcgt ctgctcccga tgccccgtgg
2251 tcatatttga cgactacggc aagctccccc agggctacct tgaggccttc
2301 gccatgacgc atgcaagcct cgaacttgtt atcctcacgg gggaccccag
2351 acagtcgacc caccacgagt ccaacgagga agctctaatt tccaagctcc
2401 cacccgcaac tgcaatattc tcggagcttt cgcgttacta catcaatgcc
2451 acccaccgaa actcaaagtt cctagcgaac aaactgggtg tctactcctc
2501 aaactcctgt ccactcaaag tcacatatgg cttccagcca caaccggggc
2551 ttcacctcct ggtcccctca cttgtcaaga aagcggcctt cactgacgcg
2601 ggccacaaag tctccacata tgccggctgc caaggcatta ctgccccgag
2651 ggtgcagatc ctcctcgaca acgatacaac catgtgcacc aaggaggtgt
2701 tgtacactgc actctctcgc gcagttgaca gcatacactt tgtgaactcc
2751 aacgcccaat ccagcgcgtt ctgggaaaag ctcgaggcca caccctacct
2801 gaaaaccttt ctcagtctgg tccgcgaaga caaaattgag gagttcacgg
2851 ccattcccgc cgaggccaaa cgtgtggccc ccccatgcac acacttcccc
2901 gtcgaggacg gcacaaccac cttggacgac ttcaaagaag agcttcgcga
2951 caagttcgac cgggaaatct tcaacccggc acatggacac acgaattgcg
3001 tccaaactga cgaccccacc acacagttat tctcccacca acaggcaaaa
3051 gacgaggcac tcctctggga aaccatcaat gcacgcctga ccctctccaa
3101 tccagaggcc aacctcgcgg aattccgagc caagaaagac ctgggcgaca
3151 tactgtggga gaactaccga aaagccatga aactgccgag cgaacaaccg
3201 gacttctccg aagatctctg gatccggtgt gcggaagagg tccagaacac
3251 gtacctgaaa aagtcggtgt cccaaatcaa aggtggcgaa cgccgacaat
3301 ccccagactt ccatgagcac cagatcctaa tcttcctcaa gtcacaatgg
3351 gtcaagaaga tggagaagct cggcgcaaag aaaatcaaac ccggccaaac
3401 catcgcctcc tttcaacagc atgcggtgat gctgtacggc accatggcgc
3451 gatacatgag aagattccga gacgccctga ggcccaacaa catcatgata
3501 aactgcgaga aaacgcccca ggacctctcc cggtgggtcc tcaactgctg
3551 ggacttctcc aaaccatcat acgccaatga cttcaccgcc ttcgaccaat
3601 cacaggacgg ggccatgctg cagttcgaaa ttcttaaggc aaaatacttt
3651 aacctcccgg aatgggtcat agaaggctac ttggacatca aactctcccc
3701 aaaaattttc atgggcacct tgacaatcat gagactaacc ggtgagggcc
3751 ccacgtttga tgccaacacg gagtgcaaca tagcctacac ccacacccgg
3801 ttcgacattc cagaaggcac agcccaaatc tacgcaggag acgactgtgc
3851 catagcccag gtatgcccag aaaaaccctc attctccctg ctgaagaacc
3901 ggatcgccct tcaagcaaaa cctgcctaca ccccccagga gagaggccag
3951 tgggctgagt tctgtggtta cctgatcacg ccaaagggcc tcatcaaaga
4001 ccccctcaag ctccacgctt ccttggagct cgccaaggcc cagaagaagg
4051 cgggcgtcaa agacgcaatt acgaacgtcg tggccaacta cagcctcgac
4101 gccaagctag cctactctct cggcgacgac ctccaagacc tcctctctcc
4151 acatcaagca cgcctccacc aggtaacggt tcgtgattta gttaagttcg
4201 gtggttcatc tttccttaac tccgattaac atggacatag tcatctcagc
4251 cctaacatct aacgactttc agagaactaa catacccatc tccaagcccc
4301 ttgtcgtcca cgctgtagcc ggcgcgggga aaaccacact catccaaaac
4351 ctcttacctg accaccccaa cctctccgcc cagaccgcag gaaccccaca
4401 gtctccaaat ctaaccgggg cctacatccg aaagctcacc tgcccagaat
4451 ctaacaaact caacctcctc gacgagtacg ccgccctcca gccactcaaa
4501 ggctcctggg acgtggtgct cgctgacccg ctccaacact caggccttgc
4551 actcagaccc catttcgtaa aatcaatcag tcaccgcctc tgcccagaga
4601 ccaccaaact catctccaaa ctcatctgcc cctgctcctc cagccgctca
4651 gacacatctt ccatccagtt ctccggactg ttcgaggggc ccctcctagg
4701 cacaatcatc gccctcgact cgaccaccca agccctcctt caagcccacg
4751 gagcgccctt cctctgcccc accgccgccc ttggtctcga gtttgacacg
4801 gttaccgtcg tctccgccac accactagcg gacgtccagg acaaggtcgg
4851 actctacatc agcctctcca gacaccgagc ccaactacat gtccggagcc
4901 caccacctca ccccacctac tgactacggc aaacccgtcc tcgcagtctc
4951 cataggaatt tccctagcac tcttagtcta ctccgccacc aggtccacac
5001 tcccccacgt cggcgacaac cttcatgcac tcccacacgg aggccggtac
5051 gtcgacggaa ccaagtccat cagttacttc agccccaacc actccaagtc
5101 ccgggaccca cttccactcg cctttctcac agtcctcatc ctctcgggac
5151 tcatacttct actatctcgc cgcggccgcc acactactca ctgcccttgc
5201 tgtggtaagt ctcacgccta aaccaggctg caccgtcgtc atcacaggac
5251 actccacgat catccaaggc cagtgcgact tccgcccgga gctagtcctc
5301 gccgcccacc ctagaggctt aagtttggaa ctcttcgcga aattcaaaca
5351 aactctccac catggcactc aaccaagctc cgacctctga cgccctcaac
5401 gcgatgacct tcgccgtctc atccccgtcc gtccccactg ccgaggaact
5451 agccacaatc acccaaggct taacgaccct cggcgttccc gccgactctc
5501 tgctcagcca cgccctcgcc gtggtcaacg cctgcttcga cgcgggctcc
5551 tctgccttcg tcaccctcag cggaccaagc cccacagcca ccatttccct
5601 cgcccaaatc gccggcgtcg tgaaagtcac caccacgcta cggaagtttt
5651 gccgcttcta cgccaaaatc atctggaacg caagactctc cagaaacctc
5701 ccaccggcgg gtttcgcccg ggcaaacatc aagttcgagc accgctgggc
5751 aggcttcgac ttcttcgatg gccttctcaa ccccgcggct ctcgaaccca
5801 tcggcgggct tacccgaacc cccacacccg acgaagtcac cgccaacgag
5851 acggcaaggt ccctgaacct tttcgaggct cgcgccagca gctccaacct
5901 cgcctcaact tccacccagt tcacccgtgg tcatctctct aacacagctc
5951 cacaggtcca attcctcccc tccccctccg actagtctag aaccgtggaa
6001 agactttaaa gagtccacgt attgccaaac ttaaccagct ctcgccccgg
6051 tgtgtatttt accgttttaa taagcctaca accagtgaaa gtctggtggg
6101 cc