Sequence of DPV Plantago asiatica mosaic virus
Plantago asiatica mosaic virus genomic RNA, complete genome, strain: Pr.
ACC No: AB360796
Dated: 2008-03-01 | Length: 6102 | CRC: -162199879
ID AB360796; SV 1; linear; genomic RNA; STD; VRL; 6102 BP.
XX
AC AB360796;
XX
DT 01-MAR-2008 (Rel. 95, Created)
DT 01-MAR-2008 (Rel. 95, Last updated, Version 1)
XX
DE Plantago asiatica mosaic virus genomic RNA, complete genome, strain: Pr.
XX
KW .
XX
OS Plantago asiatica mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC Potexvirus.
XX
RN [1]
RP 1-6102
RA Namba S., Oshima K., Yamaji Y., Komatsu K., Kagiwada S.;
RT ;
RL Submitted (09-SEP-2007) to the EMBL/GenBank/DDBJ databases.
RL Contact:Shigetou Namba The University of Tokyo, Graduate School of
RL Agricultural and Life Sciences, Department of Agricultural and
RL Environmental Biology, Laboratory of Plant Pathology; 1-1-1 Yayoi,
RL Bunkyo-ku, Tokyo 113-8657, Japan
XX
RN [2]
RA Komatsu K., Yamaji Y., Ozeki J., Hashimoto M., Kagiwada S., Takahashi S.,
RA Namba S.;
RT "Nucleotide sequence analysis of seven Japanese isolates of Plantago
RT asiatica mosaic virus (PlAMV): a unique potexvirus with significantly high
RT genomic and biological variability within the species";
RL Arch. Virol. 153:193-198(2008).
XX
FH Key Location/Qualifiers
FH
FT source 1. .6102
FT /organism="Plantago asiatica mosaic virus"
FT /strain="Pr"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:28354"
FT CDS 87. .4229
FT /codon_start=1
FT /transl_table=1
FT /gene="RdRp"
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="BAG12153.1"
FT /translation="MSNVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTP
FT EAADALEALGINSHPYAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRH
FT FHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALF
FT AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQL
FT EWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDVFL
FT PAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVN
FT YFEFTASLDSHTCFEDILSGNLLQRMLRPLKSGITQLLNFFRGRPSFVKLIKALDWQPI
FT TLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATITAEAALEQQAE
FT TPDEHQSLSLKCPTLPEHQLWALHELGNTRCGGPLLPKGPAKLTTVEPCPDLPAENSAN
FT PEPPRKTTQTLDLPHPEDPTTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRE
FT LPRAEGHAHWQGPDMERIISTLRSFNRYPTPWNPDRSRAKAFTSDVKNSRTGKALHRES
FT QVWKETQTMLAENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLD
FT WLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFALTHASLELVILTGD
FT PRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNPCPLKV
FT TYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEV
FT LYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTATTAEAKPV
FT APPCTHFPVEDGTTTLDDFKEELHDKFDREIFNPTHGHTNCVQTDDPTTQLFSHQQAKD
FT EALLWETINARLTISNPEANLAEFRAKKDLGDILWENYRKAMKLPNEQPDFSEDLWIRC
FT AEEVQNTYLKKSVAQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIA
FT SFQQHAVMLYGTMARYMRRFREALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDF
FT TAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLTIMRLTGEGPTFD
FT ANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQ
FT ERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAY
FT SLGDDLQDLLSPHQAHLHQVTVRDLVKFGGSPFLNSD"
FT CDS 4231. .4923
FT /codon_start=1
FT /transl_table=1
FT /gene="TGBp1"
FT /product="triple gene block protein1"
FT /protein_id="BAG12154.1"
FT /translation="MDIVISALTSNDFQRTNTPISKPLVVHAVAGAGKTTLIQNLLPDH
FT PNLSAQTAGTPQSPNLTGAYIRKLTCPEPNKLNLLDEYSALQPLKGSWDVVLADPLQHS
FT GLALRPHFVKSVSHRLCPETTKLISKLICPCTSSRSDASTIQFSGLFEGPLLGTIIALD
FT PTTQALLQAHGAPFLCPTAALGLEFDTVTVVSALPLEDVQDKVGLYISLSRHRAQLHVR
FT SPPPHPTY"
FT CDS 4889. .5221
FT /codon_start=1
FT /transl_table=1
FT /gene="TGBp2"
FT /product="triple gene block protein2"
FT /protein_id="BAG12155.1"
FT /translation="MSGAHHLTPPTDYGKPVLAASIGVSLALLVYSATRSTLPHVGDNL
FT HALPHGGRYVDGTKSISYFSPNHSKSRDPLPLAFLTVLILSGLILLLSRRGRYTAHCPC
FT CGKPHA"
FT CDS 5025. .5390
FT /codon_start=1
FT /transl_table=1
FT /gene="TGBp3"
FT /product="triple gene block protein3"
FT /protein_id="BAG12156.1"
FT /translation="MHSRTEADTSTELSPSATSAQTTPSPGTLSHSHSSQSSSSQGSYY
FT YYLAAAAILLTALAVVSLTPKPGCTIVITGHSTIIQGQCDFRPELVLAAHPRGLSLELF
FT AKFKQTLHHGTQPSTDL"
FT CDS 5362. .5985
FT /codon_start=1
FT /transl_table=1
FT /gene="CP"
FT /product="coat protein"
FT /protein_id="BAG12157.1"
FT /translation="MALNQAPTSDALNAMTFDVSSPSVPTAAELATITQGLTTLGVPAD
FT SLLSHALAVVNACFDAGSSAFVTLSGPSPTATISLAQIAGVVKVTTTLRKFCRFYAKII
FT WNARLSRNLPPAGFARANIKFEHRWAGFDFFDGLLNPAALEPIGGLTRTPTPDEVTANE
FT TARSLNLFEARASNSNLASTSTQFTRGQLSNTAPQVQFLPSPSD"
XX
SQ Sequence 6102 BP; 1560 A; 2215 C; 1238 G; 1089 T; 0 other;
ab360796 Length: 6102 01-MAR-2008 Type: N Check: 2501 ..
1 gaaaacaaac ctacacaaac caaacgtcaa cagacataca cggccaaaca
51 gtggtaaccg atttgctcga aagctaggtt aacggtatgt caaacgttcg
101 gaacgtcttc gcccagctca ccgacccctc tctcaaagcc gtcatccaag
151 atgaggccta cagacacctc aaacgtgagc ttgcacaaac tcgccacaac
201 aaccccttcg cccaaacacc cgaagctgcc gacgcgctcg aggcactcgg
251 tattaactcc cacccctacg caatcacccc acacacccac gcagccgcca
301 aagcaattga gtccgacctc tacgaggtgg tatcccacta cctcccaaaa
351 gaaaaccccg tctccttcct cttcatgaag cccgccaaac tcagacactt
401 ccaccgagga cccacccacg gggaccactt cctcaacgcc cacgtggaac
451 ccaaggacgt acccaggtac ccacaggaca caatcatcaa acgcctggaa
501 aacatcccca ccagcatagc cttcatggga gacaccctcc attttctcag
551 cccatccttc gtcaccgccc tcttcgcaca ctccccaaaa ctccaaaccc
601 tgtacgcaac gctcgtcctt ccccccgaag ccctctacag actaaggtca
651 ctctacccac aaatctacac gttgacctac tccgaggacg ggttcatgta
701 cataccgggt ggccatgcgg gagcctcgta cttccacaaa tactcgcagc
751 tcgaatggct cacagtggga cacctcacca cgccaggaca aatcaccgtg
801 accgcccaac ggctggaaac caagggggcg aaccacctct tcatctttca
851 aaggggcaac tacctcaccc ccgaaaggcg cactttcacc accactgaac
901 actacgtcac agtcccggac gtcttcctcc cggccaagta caactgcagg
951 acacccatct caaaaacaat catgatgcag atgttcttct acattaagtc
1001 cgtcaaagag gccaaagagc gcgacatttg ggcaaaattt agacaactca
1051 tcagcaccaa agagctccaa cactaccagc cgtccgaaat caccctgctg
1101 gttaactact ttgaattcac cgcctccctc gactcccaca catgctttga
1151 agatatactt tccgggaacc ttttacagcg aatgctccga ccgctgaagt
1201 caggcattac acagctgctg aacttcttta gagggcgccc ctctttcgtc
1251 aagctgatca aggcccttga ctggcaaccc atcaccctgg aatttcccgt
1301 gcggaaggtc aacactcacc tccgaggggc cccggggttc gacagcccat
1351 tcgcacgacc acaaccagtc aacccggacg acgccgaaac cacccaaagc
1401 ttccaggcct tctgccaggc caccatcacc gctgaggccg ccctagagca
1451 acaagccgaa acacctgacg agcatcagag cctcagcctc aaatgcccca
1501 cccttccgga acaccagctc tgggccttgc atgaactggg aaacacaaga
1551 tgcgggggcc cactcctacc gaaggggcct gccaaactca caacggtgga
1601 gccctgcccg gacctccccg cagaaaactc agcaaacccc gagcctccga
1651 gaaagacaac ccaaaccttg gacctccccc accccgaaga ccccaccacc
1701 ctaccctggg tcgcctggct ccccaaactc aacgccctag gcttcgaagc
1751 cctcgagatc cagactgacc cgtccacagg agaaatgatc atgccaatca
1801 cggacacaag agagctcccc agagcagaag gccacgccca ttggcagggc
1851 ccagacatgg aacggatcat ttccaccctc cgaagcttca acaggtaccc
1901 cacaccgtgg aaccccgacc gatctagagc caaggccttc acctccgacg
1951 taaaaaattc ccgaacaggc aaggcgctgc accgcgagtc tcaagtctgg
2001 aaggagaccc aaacgatgct agcggagaac tcgcagacca acctcgccat
2051 ctccgtcatc catggtgcag ggggatcagg caaaagccag gcactacaga
2101 cactcctccg gcagtacccc aacctcccca tcgaggtcgt ccttccaacc
2151 aacgagctca ggctggactg gctaaagaaa ctcccccaca acccccctga
2201 acaattcaga acgttcgaga gagcttttgt ctgctcccgg tgccccgtgg
2251 ttatcttcga tgactacggc aagctccccc agggctatct tgaggccttc
2301 gccttgacgc acgcaagcct tgaactcgtc atcctcacag gagaccccag
2351 acagtcgacc caccatgagt ccaacgagga agctctgatc tccaaactcc
2401 cacccgcaac cgcaatattc tcggaacttt cacgctacta catcaatgcc
2451 acccaccgaa actcaaagtt tctggcgaac aaattgggtg tgtactcctc
2501 aaacccctgt ccactcaaag tcacatatgg tttccagcca caaccggggc
2551 tccaccttct ggtcccctca cttgtcaaaa aagcggcttt cactgacgcg
2601 ggccacaaag tctccacata tgccggctgt caaggcatca ctgctccgag
2651 ggtacagatt ctcctcgaca atgacacaac catgtgtacc aaggaggtgt
2701 tgtacaccgc actctcccgc gcggtcgaca gcatccactt cgtaaactcc
2751 aacgcccagt ccagtgcgtt ttgggaaaag cttgaggcca caccctacct
2801 gaaaaccttc ctaagcctag ttcgcgaaga taaaattgag gagttcacgg
2851 ccaccactgc cgaggccaaa cctgtggccc ccccgtgcac acacttcccc
2901 gtcgaggacg gcaccaccac cttggacgac ttcaaggaag agctccacga
2951 caagtttgac cgggagatct tcaacccgac acatggacac acaaattgcg
3001 tccaaactga cgaccccacc acacagctat tctctcacca acaagcaaaa
3051 gacgaggcac tcctctggga aaccataaat gcacgcctga ccatctccaa
3101 tccagaggca aacctcgcgg agtttcgggc caagaaggac ctgggcgaca
3151 tcctgtggga gaactaccgc aaagcaatga aactgccgaa cgaacaaccg
3201 gacttctccg aagacctctg gatccggtgt gcggaagagg tccagaacac
3251 atacctgaag aagtcggtag ctcaaattaa aggaggcgag cgtcgacaat
3301 ccccagactt ccacgaacac cagatcctaa tctttctcaa gtctcaatgg
3351 gtcaagaaaa tggagaagct cggcgcgaaa aagatcaaac ccggccagac
3401 catcgcctcc ttccaacagc atgcggtgat gctgtacggc actatggcgc
3451 gctacatgag gagatttcgg gaagccctga gccctaacaa catcatgata
3501 aactgcgaga aaacgcccca agacctctcc cgatgggtcc tcaactactg
3551 ggatttctcc aaaccgtcat acgccaacga cttcaccgcc ttcgaccaat
3601 cccaggacgg ggccatgctg cagttcgaaa tcctcaaggc caaatacttc
3651 aacctcccgg aatgggtcat cgaaggctac ctggacatca agctctcccc
3701 aaaaatcttc ctgggcaccc tgacaatcat gaggctaaca ggggaaggcc
3751 ccacattcga cgccaacacg gagtgtaaca ttgcctacac ccacaccagg
3801 ttcgacatcc cggaaggaac agcccaaatc tacgccggag acgactgcgc
3851 catagcccaa gtatgtccag aaaaaccttc attctccctg ctgaagaacc
3901 gtatcgccct ccaagccaag ccagcctaca ccccccagga gagaggtcag
3951 tgggccgagt tctgtggcta cctaatcaca ccaaaaggtc tcatcaaaga
4001 ccccctcaag cttcacgcat ccttggagct tgccaaggcc cagaaaaaag
4051 cgggcgtcaa agacgcaatc accaatgtgg tagccaacta cagcctcgac
4101 gccaagctag cctactctct aggcgacgac ctccaagatc tcctctctcc
4151 acatcaagca cacctccacc aggtaacggt tcgtgactta gttaagttcg
4201 gtggctcacc tttccttaac tccgattaac atggacatag tcatctcagc
4251 cctaacatct aacgactttc aaagaactaa cactcccatc tccaagcctc
4301 tagtagttca cgctgtagct ggcgcgggga aaaccacact gatccagaac
4351 ctcctccccg accaccccaa cctctccgct cagaccgccg gaaccccaca
4401 atctccaaac ctgaccgggg cttacatccg gaagctcacc tgcccagaac
4451 ctaacaaact caacctcctc gacgagtact ccgccctcca accactcaaa
4501 ggctcctggg acgtcgtgct tgccgaccca ctccaacact caggactcgc
4551 gctccgaccc cacttcgtaa agtcagtcag tcatcgcctc tgcccggaga
4601 cgaccaaact catctccaaa ctcatctgcc cctgcacctc cagccgctct
4651 gacgcctcaa ccatccagtt ctccggactg ttcgaaggac ctctcctggg
4701 caccatcatt gccctcgacc ctaccaccca agctctcctt caagcccacg
4751 gagcgccctt cctttgcccc acagccgccc tgggcctcga gtttgacacg
4801 gtcaccgtcg tctccgctct acctctagag gacgtccagg acaaggtcgg
4851 actctacatc agcctttcca gacaccgcgc ccaactacat gtccggagcc
4901 caccacctca ccccacctac tgactacggc aaacccgttc tcgctgcttc
4951 cataggagtt tctctcgccc tcttggtcta ctccgccacc aggtccacgc
5001 tcccccacgt cggcgacaac cttcatgcac tcccgcacgg aggccgatac
5051 gtcgacggaa ctaagtccat cagctacttc agcccaaacc actccaagtc
5101 ccgggaccct ctcccactcg cattcctcac agtcctcatc ctctcagggc
5151 tcatactact actatctcgc cgcggccgct atactgctca ctgcccttgc
5201 tgtggtaagc ctcacgccta aacccggctg caccattgtg atcacagggc
5251 actccaccat tatccaaggc cagtgcgact tccgcccgga gcttgtcctc
5301 gccgcccacc ctagaggctt aagtttggaa ctctttgcga aattcaaaca
5351 aacgctccac catggcactc aaccaagcac cgacctctga cgccctcaac
5401 gcgatgacct tcgacgtctc atccccgtcc gtccccaccg ccgcggaact
5451 ggccacaatc acccaggggt taacaaccct cggagtcccc gccgactcct
5501 tgcttagcca cgccctcgca gtggtcaacg cctgcttcga cgcgggctcc
5551 tccgccttcg tcaccctcag cggaccaagc cccacagcca ccatctccct
5601 cgcccaaatc gccggcgtgg tgaaagtcac caccacgttg cggaagtttt
5651 gccgcttcta tgccaaaatc atttggaacg caagactttc cagaaacctc
5701 ccaccggctg gcttcgctcg ggcaaacatc aagttcgagc accgctgggc
5751 aggcttcgac ttcttcgacg gccttctcaa ccccgccgct cttgaaccca
5801 tcggcggact cactcgaacc ccgacaccag acgaggtcac cgccaatgag
5851 acggcaaggt ccctcaacct tttcgaggct cgtgccagta actccaacct
5901 cgcctcaaca tccacccagt tcacccgcgg ccagctctcc aacacagctc
5951 cgcaggtcca atttctccct tccccctccg actagtctag aaccgtggaa
6001 agactttaaa gagtccacgc attgccaaac ttaaccagct ctcgccccgg
6051 tgtgtatttt accgttttaa taagcctacg accagtgaaa gtctggtggg
6101 cc