Sequence of DPV Cucumber mosaic virus
Cucumber mosaic virus genomic RNA, segment RNA1, complete sequence, isolate: 42CM.
ACC No: AB368496
Dated: 2010-01-18 | Length: 3371 | CRC: -870595234
ID AB368496; SV 1; linear; genomic RNA; STD; VRL; 3371 BP.
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AC AB368496;
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DT 05-FEB-2008 (Rel. 94, Created)
DT 18-JAN-2010 (Rel. 103, Last updated, Version 2)
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DE Cucumber mosaic virus genomic RNA, segment RNA1, complete sequence,
DE isolate: 42CM.
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KW .
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OS Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC Cucumovirus.
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RN [1]
RP 1-3371
RA Maoka T.;
RT ;
RL Submitted (14-NOV-2007) to the EMBL/GenBank/DDBJ databases.
RL Contact:Tetsuo Maoka National Agricultural Research Center for Hokkaido
RL Region, Potato Production and Protection Research Team; Hitsujigaoka,
RL Toyohira, Sapporo, Hokkaido 062-8555, Japan
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RN [2]
RA Iwasaki M., Yamamoto T., Inaba T.;
RT "Wilt of cucumber plants grafted on squash rootstocks caused by viruses";
RL Bull. Shikoku Natl. Agric. Exp. St 60:1-88(1996).
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RN [3]
RA Maoka T., Saito-Hayano Y., Iwasaki M., Yoshida K., Masuta C.;
RT "Mixed infection in tomato to ensure frequent generation of a natural
RT reassortant between two subgroups of Cucumber mosaic virus";
RL Virus Genes 40:148-150(2010).
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FH Key Location/Qualifiers
FH
FT source 1. .3371
FT /organism="Cucumber mosaic virus"
FT /segment="RNA1"
FT /isolate="42CM"
FT /serotype="Y"
FT /mol_type="genomic RNA"
FT /country="Japan:Kagawa, Toyonaka"
FT /isolation_source="cucumber"
FT /collection_date="15-Oct-1986"
FT /note="subgroup I"
FT /db_xref="taxon:12305"
FT CDS 97. .3078
FT /codon_start=1
FT /transl_table=1
FT /gene="1a"
FT /product="1a protein"
FT /db_xref="GOA:B0I4V9"
FT /db_xref="InterPro:IPR000606"
FT /db_xref="InterPro:IPR002588"
FT /db_xref="UniProtKB/TrEMBL:B0I4V9"
FT /protein_id="BAF93465.1"
FT /translation="MATSSFNINELVASHGDKGLLATALVDKAAHEQLEEQLQHQRRGR
FT KVYVRNVLSVKDSEVIRNRYGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGL
FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHTERLMNMRKIILNDPQQFDGRQ
FT PDFCTHPAADCKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ
FT GVIPELNCQWRKIRNAFSETEDVTPLVGKLNSTVFSRVRKFKTLVAFDFINESTMSYVH
FT DWENIKSFLTDQTYSYKGMTYGIERCVINAGIMTYKIIGVPGMCPPELIRHCIWFPSIK
FT DYVGLKIPASQDLVEWKTVRILTSTLRETEEIAMRCYNDKKAWMEQFKVILGVLSAKSS
FT TIVINGMSMQSGERIDINDYHYIGFAILLHTKMKYEQLGKMYDMWNASSISKWFAALTR
FT PLRVFFSSAVHALFPTLRPREEKEFLIKLSTFVTFNEECSFDGGEEWDVISSAAYVATQ
FT AVTDGKVLAAQKAEKLAEKLAQPVDEVSDSREVPSSTPDDTADVCGKEQEVSELDSLSA
FT QTRSPITRVAERATAMLEYAAYEKQLHDTTVSNLKRIWNTAGGDDKRNSLEGNLKFVFD
FT TYFTVDPMVNIHFSTGRWMRPVPEGIVYSVGYNERGLGPKSDGELFIVNSECVICNSES
FT LSAVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKS
FT SDSKEACTFVRTADSVLLNECPTVSRVLVDEVVLLHFGQLCAVXSKLKAVRAICFGDSE
FT QIAFSSRDASFDMRFSKIIPDETSDADTTFRSPQDVVPLVRLMATKALPKGTHSKYTKW
FT VSQSKVKRSVTSRSIASVTLVDLDASRFYITMTQADKASLISRAKEMNLPKTFWNERIK
FT TVHESQGISEDHVTLVRLKSTKCDLFKQFSYCLVALTRHKVTFRYEYCGVLNGDLIAEC
FT IARA"
XX
SQ Sequence 3371 BP; 850 A; 737 C; 815 G; 968 T; 1 other;
ab368496 Length: 3371 18-JAN-2010 Type: N Check: 1176 ..
1 gttttattta caagagcgta cggttcaacc cctgcctcct ctgtaaaact
51 accctttgaa aacctctctt ttctaatctt ttctttgtaa attcctatgg
101 cgacgtcctc gttcaacatc aatgaattgg tagcctccca cggcgataaa
151 ggactactcg cgaccgccct cgttgataag gcagctcatg agcagctcga
201 ggagcaatta cagcatcaac gtaggggccg taaggtctac gttcggaatg
251 ttctgagcgt aaaggattcc gaagttattc ggaatcggta tggaggaaag
301 tacgacctcc atcttaccca gcaggagttt gctccccacg gcctagctgg
351 tgccctccgc ttgtgtgaaa ctctcgattg tctagactct ttcccttctt
401 caggtctgcg gcaggacctc gtcttagact tcggaggaag ttgggtcaca
451 cattacctcc gcggacacaa cgtacactgc tgttctccct gtttgggaat
501 ccgtgataaa atgcgccaca cggaacgttt aatgaacatg cgcaagatca
551 tcttgaacga tccacaacag ttcgatggtc gacagccgga cttctgcacc
601 catcctgctg ctgattgcaa agtacaagcc cactttgcta tatctattca
651 tggaggttat gatatgggct ttagaggatt gtgtgaggca atgaatgctc
701 acggaaccac cattttgaag ggaacgatga tgttcgatgg tgcgatgatg
751 tttgacgacc aaggtgtaat tcctgaactt aactgtcagt ggaggaagat
801 taggaatgct ttctctgaaa ctgaagacgt cacaccgtta gttggtaaac
851 tcaattccac agtattttct cgtgtgcgta aattcaagac tttggtagct
901 ttcgatttca ttaacgaatc tactatgtct tatgttcatg attgggagaa
951 tataaaatct tttctaacgg accagaccta ttcttacaaa ggaatgactt
1001 acggtattga gcgttgtgtc attaatgctg gtatcatgac gtacaagatc
1051 atcggagtac ctgggatgtg tccacccgaa ctcattcgac attgtatttg
1101 gttcccctct attaaagact acgtcggtct aaagattccc gcgtcacagg
1151 atctagttga gtggaaaaca gtgcgtattt taacgtcaac attgcgtgaa
1201 actgaagaga ttgctatgag gtgttacaat gataagaagg cgtggatgga
1251 acaatttaag gtcatcttag gtgttctatc tgctaaatca tctaccattg
1301 ttatcaatgg tatgtccatg caatctggtg aacggataga catcaatgat
1351 tatcactaca ttgggttcgc cattcttctt cacacaaaaa tgaagtatga
1401 gcagctggga aaaatgtatg atatgtggaa tgcttcgagt atttcgaagt
1451 ggtttgcagc gttgactcgt ccgctgcgtg tatttttctc tagtgctgtc
1501 cacgcgctgt tcccgacctt gagaccccgc gaggaaaaag aattcctgat
1551 taagctctcc accttcgtga cttttaatga agagtgctca tttgacggtg
1601 gagaggaatg ggacgtgata tcatctgctg catacgttgc tacacaggct
1651 gttactgatg ggaaagtttt ggctgcgcag aaagccgaga agctcgctga
1701 aaagcttgca caacccgtgg atgaggtatc agacagccgt gaggtgccat
1751 cttcaacacc cgatgatact gccgatgttt gtggaaagga gcaagaagtt
1801 tcggaacttg actcattatc ggctcagaca cgttccccca tcactagagt
1851 tgctgaaagg gctactgcca tgttggagta cgccgcttat gagaaacagc
1901 tacatgacac cacagtgtct aatttgaaac gtatttggaa tacggcgggc
1951 ggtgatgaca agagaaactc cctcgaaggt aatttgaagt ttgttttcga
2001 tacgtatttc actgtcgacc ccatggtgaa cattcacttt tcgacgggtc
2051 ggtggatgcg tcctgtgcct gagggaattg tttactctgt tggttataat
2101 gaacgcggtt taggtccgaa gtctgatgga gagcttttca ttgtcaatag
2151 tgagtgtgtg atatgtaata gcgagtcttt atctgctgtc acacgctctc
2201 ttcaagctcc gactggaacc atcagtcaag tcgatggagt cgctggttgt
2251 gggaaaacta ctgcaattaa atccattttt gagccatcca ctgacatgat
2301 cgttaccgcg aataagaagt ccgcccaaga tgtgcgtatg gcacttttca
2351 aatcgtcaga ctctaaggaa gcgtgcacct ttgttcgaac agccgattct
2401 gtcctactta atgaatgtcc gactgtgagt agggttttgg ttgatgaggt
2451 cgtattgcta cactttggtc aattgtgtgc tgttaygtcc aaactgaagg
2501 ctgtgcgagc tatatgtttt ggggattcgg agcaaattgc tttttcttct
2551 cgagatgcct cgtttgacat gcgtttctct aagatcattc ctgatgagac
2601 tagtgatgcg gacaccacat tccgtagccc acaagatgtc gtgccgcttg
2651 tgcgtctaat ggctacgaag gcccttccga aaggaactca ttcgaaatac
2701 acgaaatggg tttctcaatc taaagtgaag agatctgtca catcccgttc
2751 tattgctagt gtgacattag ttgacctgga tgcttctagg ttttacatca
2801 cgatgactca agctgataaa gcttcactga tttcgagggc gaaagagatg
2851 aacttaccga agaccttttg gaacgaaagg attaagaccg tacatgaatc
2901 tcaaggtatt tctgaagatc acgttacttt ggtaagatta aagagcacaa
2951 agtgtgacct gtttaaacag ttttcttact gtcttgttgc tttgactagg
3001 cacaaggtca ccttccgcta cgagtattgc ggtgtattga atggcgattt
3051 gatcgccgaa tgtattgctc gtgcttagcg gttcccctcc ttcgggcggg
3101 atctgagttg gcggtaatct acaaaccgtc tgaagtcact aaacgttaac
3151 ggtcgcgttt acggtgaacg ggttgtccat ccagcttacg gctaaaatgg
3201 tcagtcgtgg agaaatccac gccagtagac ttacaagtct ctgaggcgcc
3251 tttgaaacca tctcctaggt ttcttcggaa ggacttcggt ccgtgtactt
3301 ctagcacaat gtgttagttt caggggtacg ggtgcccccc cactttcgtg
3351 ggggcctcca aaaggagacc a