Sequence of DPV Tomato leaf curl Philippines virus
Tomato leaf curl Philippines virus DNA, segment A, complete sequence, isolate: Laguna2.
ACC No: AB377112
Dated: 2011-02-16 | Length: 2754 | CRC: -1519579757
ID AB377112; SV 1; linear; genomic DNA; STD; VRL; 2754 BP.
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AC AB377112;
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DT 05-FEB-2008 (Rel. 94, Created)
DT 16-FEB-2011 (Rel. 107, Last updated, Version 3)
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DE Tomato leaf curl Philippines virus DNA, segment A, complete sequence,
DE isolate: Laguna2.
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KW .
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OS Tomato leaf curl Philippines virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2754
RA Matsuda N., Bajet B.N., Sharma P., Ikegami N.;
RT ;
RL Submitted (24-JAN-2008) to the EMBL/GenBank/DDBJ databases.
RL Contact:Naoki Matsuda Graduate School of Agricultural Science, Tohoku
RL University; 1-1, Tsutsumidori-Amamiyamachi, Aobaku, Sendai, Miyagi
RL 981-8555, Japan
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RN [2]
RA Sharma P., Matsuda N., Bajet N.B., Ikegami M.;
RT "Molecular analysis of new isolates of Tomato leaf curl Philippines virus
RT and an associated betasatellite occurring in the Philippines";
RL Arch. Virol. 156:305-312(2011).
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FH Key Location/Qualifiers
FH
FT source 1. .2754
FT /organism="Tomato leaf curl Philippines virus"
FT /segment="A"
FT /isolate="Laguna2"
FT /mol_type="genomic DNA"
FT /country="Philippines:Laguna"
FT /isolation_source="tomato"
FT /db_xref="taxon:96054"
FT CDS 142. .486
FT /codon_start=1
FT /transl_table=1
FT /gene="V2"
FT /product="pre-coat protein"
FT /db_xref="GOA:B0I510"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:B0I510"
FT /protein_id="BAG06849.1"
FT /translation="MWDPLVHPFPESLHGFRCMLAIKYLQSLQNKYSPDTVGHEFLKDF
FT ICILRSKNYAEAFNRYSNVVANVYNTSEAQLRESVQSPCLCPHCPRHVLQAKVMDLQAH
FT VSQAQDVQNV"
FT CDS 302. .1078
FT /codon_start=1
FT /transl_table=1
FT /gene="V1"
FT /product="coat protein"
FT /db_xref="GOA:B0I517"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:B0I517"
FT /protein_id="BAG06850.1"
FT /translation="MPKRSIDTVTSLPMSITRRRLNYGSQYSLPASVPTVPDMSYKRRS
FT WTYRPMFRKPKMYRMYRSRDVPRGCEGPCKVQSYEQRHDIAHVGKVICVSDVTRGNGLT
FT HRVGKRFCVKSVYVLWKVWMDENIKTKNHTNTVMFFLVRDRRPYGTPQDFGQVFNMYDN
FT EPSTATVKNDNRDRYQVLRKFQATVTGGQYASKEQAIVKRFMKINNHVTYNHQEAAKYD
FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN"
FT CDS complement(1075. .1476)
FT /codon_start=1
FT /transl_table=1
FT /gene="C3"
FT /product="C3 protein"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:B0I518"
FT /protein_id="BAG06851.1"
FT /translation="MDSRTGEPITAAQAENGVYTWTITNPLYFKISQHDKMPFLKNHDI
FT ITVQIQFNHNLRKALGIHQCFLICKIWTHLHPQTWRFLRVFKYQCMKYLDNLGVISINN
FT VIRAIKHVLYVVIQTIDVQISHIIKFNIY"
FT CDS complement(1217. .1624)
FT /codon_start=1
FT /transl_table=1
FT /gene="C2"
FT /product="C2 protein"
FT /db_xref="GOA:B0I519"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:B0I519"
FT /protein_id="BAG06852.1"
FT /translation="MQNSSPSRGHSTQVPIKVQHKIAKRRPIRRRRIDLPCGCSYYLGL
FT NCASYGFSHRGTHHCSSGREWRIYLDDNKSPLFQDIPTRQDAVLEKPRHHNSTDTVQPQ
FT PEESVGNSSMFSDLQNLDSFTSSDLAFLKSI"
FT CDS complement(1524. .2612)
FT /codon_start=1
FT /transl_table=1
FT /gene="C1"
FT /product="replication-associated protein"
FT /db_xref="GOA:B0I520"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:B0I520"
FT /protein_id="BAG06853.1"
FT /translation="MAPPRKFQINAKNYFLTYPKCCLTKEETLAQIKTLDTVTNKKFIK
FT ICRELHEDGSPHLHVLIQFEGKFRCTNKRFFDLVSPTRSAHYHPNIQGAKSSSDVKSYI
FT DKDGDTLEWGEFQIDGRSARGGQQSANDAYAKAINTGSKSEALNVIRELAPKDFVLQFH
FT NLNANLDRIFAPPLEVFRCPFLSSSFDQVPKELEDWVSENVRDAAARPWRPISIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNSPLRDWALKNAEFITLTRPL
FT YSGTHQSPAQNSQEETNTQAEN"
FT CDS complement(2165. .2455)
FT /codon_start=1
FT /transl_table=1
FT /gene="C4"
FT /product="C4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:B0I515"
FT /protein_id="BAG06854.1"
FT /translation="MGALISMCSSSSRGNSDARIRDSSTWCPQPGQHITIQTYRELNQA
FT PTSNHILIKTETPSNGVSFRSMEDLLEGVNNQPMMLTPKQLTQEVSRRLLM"
XX
SQ Sequence 2754 BP; 733 A; 542 C; 599 G; 880 T; 0 other;
ab377112 Length: 2754 16-FEB-2011 Type: N Check: 3756 ..
1 accgtgggcc gcgcaaattt tttttatatt gggcctaatg ggcctgttgg
51 aagtcggccg cgaccaatgg aaacgttccc tcatcgctta acaatcatgt
101 tgtcctctat ttatttctgc tgcatcagtt ttgtactaaa aatgtgggat
151 cctctggtac atccttttcc tgaaagctta cacggcttca gatgtatgct
201 tgccatcaaa tatcttcaga gcttacagaa taaatattct cctgatactg
251 ttggacatga gtttttgaaa gattttatat gcatattgcg aagtaagaat
301 tatgccgaag cgttcaatag atacagtaac gtcgttgcca atgtctataa
351 cacgtcggag gctcaattac gggagtcagt acagtctccc tgcctctgtc
401 cccactgtcc cagacatgtc ttacaagcga aggtcatgga cttacaggcc
451 catgtttcgc aagcccaaga tgtacagaat gtatagaagc cgtgatgttc
501 ctcgtgggtg cgaaggccca tgtaaggttc agtcttatga acagcgtcat
551 gatatagccc atgtgggtaa ggtcatatgt gtgtctgatg tcactcgtgg
601 taatgggctc acacatcgtg ttggaaagag gttttgtgta aagtctgtgt
651 atgtgttgtg gaaggtctgg atggatgaga acatcaagac taagaatcac
701 actaacactg tcatgttttt tttagttcgt gataggagac cctatgggac
751 tccccaggat tttggtcagg tttttaacat gtatgataat gagcctagta
801 ctgcaactgt taaaaatgat aatagagatc gatatcaagt tcttcgtaaa
851 tttcaagcta ccgtgactgg aggtcagtat gcaagcaagg agcaagcaat
901 agtcaagagg ttcatgaaga ttaacaatca tgttacttac aatcatcaag
951 aggctgcgaa gtatgataac catacagaga acgctttact gttgtatatg
1001 gcttgtactc atgctagtaa cccagtgtat gctacgttga aaatcagaat
1051 ctatttttat gattctgttc agaattaata aatattgaat tttattatat
1101 gagaaatttg tacatctatt gtttgaatta caacgtacag tacatgcttg
1151 atagccctaa ttacattgtt aatactaatt acacccaaat tatctaaata
1201 tttcatacac tgatatttaa atactcttaa gaaacgccaa gtctgaggat
1251 gtaaatgagt ccagattttg cagatcagaa aacattgatg aattcccaac
1301 gctttcctca ggttgtggtt gaactgtatc tgtactgtta tgatgtcgtg
1351 gtttttcaag aacggcatct tgtcgtgttg ggatatcttg aaataaaggg
1401 gatttgttat cgtccaggta tatacgccat tctctgcctg agctgcagtg
1451 atgggttccc ctgtgcgaga atccatatga agcgcaatta agtcctagat
1501 agtaagagca gccgcaagga agatcaattc tccgcctgcg tattggtctc
1551 ctcttggcta ttttgtgctg gactttgatg ggtacctgag tagagtggcc
1601 tcgtgagggt gatgaattct gcattcttta gtgcccagtc tctgagtgga
1651 gaatttttat cctcatccaa gtattcttta tacgacgatg taggtcctgg
1701 attgcagagg aagattgttg ggatcccacc tttaatttga attggtttcc
1751 cgtactttgt gttgctttgc cagtcccttt gggcccccat aaactcttta
1801 aaatgcttta gatagtgggg gtcgacgtca tcaatgacgt tgtaccaagc
1851 atcattactg tacacctttg gactaaggtc cagatgtcca cacaaataat
1901 tatgtggtcc cagagatcta gcccacatcg tcttccccgt cctgctatct
1951 ccttctatga caatacttat gggtctccat ggccgcgcag cggcatcccg
2001 aacattctcg gaaacccagt cttcaagttc ttttggaact tggtcgaaag
2051 aagaagaaag aaaaggacaa cgaaaaacct ctaaaggagg tgcaaagatc
2101 ctatctaaat tggcatttaa attatgaaat tgtaaaacaa aatcttttgg
2151 agctaactcc ctaattacat taagagcctc cgacttactt cctgtgttaa
2201 ttgctttggc gtaagcatca ttggctgatt gttgaccccc tctagcagat
2251 cttccatcga tctgaaactc accccattcg agggtgtctc cgtctttatc
2301 aatatatgat ttgacgtcgg agcttgattt agctccctgt atgtttggat
2351 ggtaatgtgc tgacctggtt ggggacacca ggtcgaagaa tctcttattc
2401 gtgcatctga atttcccctc gaactggatg agcacatgga gatgagggct
2451 cccatcttcg tgcagttctc tgcagatttt gatgaatttt ttgtttgtta
2501 cagtatctag tgtttttatc tgggcaaggg tttcctcttt tgtaagacaa
2551 catttgggat atgtaagaaa ataatttttg gcatttattt ggaattttct
2601 gggtggtgcc atttgactca gtcaatgggt acctattgag aggatttcat
2651 tctactcagg gtatcggtac attggtaccc atatatactt ggttacctaa
2701 tggcataatt gtaatttttt tatgggcttc caagcggccc acgactataa
2751 tatt