Sequence of DPV Potato virus Y
Potato virus Y gene for polyprotein (P1 and HC-Pro region), partial cds, isolate: SYR-II-Sn.
ACC No: AB461487
Dated: 2010-01-18 | Length: 1243 | CRC: 942035032
ID AB461487; SV 1; linear; genomic RNA; STD; VRL; 1243 BP.
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AC AB461487;
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DT 09-NOV-2009 (Rel. 102, Created)
DT 18-JAN-2010 (Rel. 103, Last updated, Version 2)
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DE Potato virus Y gene for polyprotein (P1 and HC-Pro region), partial cds,
DE isolate: SYR-II-Sn.
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KW .
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OS Potato virus Y
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1243
RA Chikh Ali M., Maoka T., Natsuaki K.T.;
RT ;
RL Submitted (23-SEP-2008) to the EMBL/GenBank/DDBJ databases.
RL Contact:Mohamad Chikh Ali Laboratory of Plant Pathology, Faculty of
RL Agriculture, Utsunomiya University, International Agricultural Development;
RL Mine-machi 350, Utsunomiya 321-8505, Japan
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RN [2]
RA Chikh Ali M., Maoka T., Natsuaki T., Natsuaki K.T.;
RT "PVYNTN-NW, a novel recombinant strain of Potato virus Y predominating in
RT potato fields in Syria";
RL Plant Pathol. 59:31-41(2010).
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FH Key Location/Qualifiers
FH
FT source 1. .1243
FT /organism="Potato virus Y"
FT /host="Solanum nigrum"
FT /lab_host="Nicotiana tabacum cv. Samsun"
FT /isolate="SYR-II-Sn"
FT /mol_type="genomic RNA"
FT /country="Syria:Aleppo"
FT /collected_by="Katsumi Katayama"
FT /collection_date="20-Oct-2004"
FT /identified_by="Mohamad Chikh Ali"
FT /db_xref="taxon:12216"
FT 5'UTR <1. .166
FT CDS 167. .>1243
FT /codon_start=1
FT /transl_table=1
FT /product="polyprotein"
FT /protein_id="BAI48932.1"
FT /translation="MATYMSTICFGSFECKLPYSPASCGHIVKEREVLASVDPFADLET
FT QLSARLLKQEYATVRVLKNGTLTYRYKTDAQITRIQKKLERKDREEYHFQMAAPSIVSK
FT ITIAGGEPPSKLESQVRRGVIHTTPRMRTAKTYHTPKLTEGQMNHLIKQVKQIMSTKGG
FT SVQLISKKSTHVHYKEVLGSHRAVVCTAHMRGLRKRVDFRCDKWTVVRLQHLARTDKWT
FT NQVRATDLRKGDSGVILSNTNLKGNFGRSSEGLFIVRGSHEGKIYDARSKVTQGVMDSM
FT VQFSSAESFWKGLDGNWAQMRYPTDHTCVAGLPVEDCGRVAAIMTHSILPCYKITCPTC
FT AQQYANLPASDLLKILHKH"
FT mat_peptide 167. .991
FT /gene="P1"
FT /product="P1 protein"
FT mat_peptide 992. .>1243
FT /gene="HC-Pro"
FT /product="helper component protein"
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SQ Sequence 1243 BP; 390 A; 269 C; 276 G; 308 T; 0 other;
ab461487 Length: 1243 18-JAN-2010 Type: N Check: 7016 ..
1 caacataaga aaaacaacgc aaaaacactc ataaacgctt attctcactc
51 aagcaacttg ctaagtttca gtttaaatca tttccttgca attctcttaa
101 acgatattgg aaaccatttc aactcaacaa gtaatttcat cactttcaac
151 caattttaga tcctcaatgg caacttacat gtcaacaatc tgtttcggtt
201 cgtttgaatg caagctacca tactcacccg cctcttgcgg gcatattgtg
251 aaggaacgag aagtgctggc ttccgttgat cctttcgcag atttggaaac
301 acaacttagt gcacgattgc tcaagcaaga atatgctact gttcgtgtgc
351 tcaagaacgg tactcttacg taccgataca agactgatgc ccagataacg
401 cgcatccaga agaaactgga aaggaaggat agggaagaat atcacttcca
451 gatggcagct cctagtattg tgtcaaagat cactattgct ggtggagagc
501 caccttcaaa acttgaatca caagtgcgga ggggtgtcat ccacacaact
551 ccaaggatgc gcacagcaaa gacatatcac acgccaaagt tgacagaggg
601 acagatgaac caccttatca agcaggtgaa gcaaattatg tcaaccaaag
651 gagggtctgt tcaactgatt agcaagaaaa gtacccatgt tcactataaa
701 gaagttttgg gatcacatcg cgcagttgtt tgcactgcac atatgagagg
751 tttacgaaag agagtggact ttcggtgtga taaatggacc gttgtgcgtc
801 tacagcatct cgccaggacg gacaagtgga ctaaccaagt tcgtgctact
851 gatctacgca agggcgatag tggagttata ttgagtaata ctaatctcaa
901 aggaaacttt ggaagaagct cggagggcct attcatagtg cgtgggtcgc
951 acgaaggaaa aatctatgat gcacgttcca aggttactca aggggttatg
1001 gattcaatgg ttcagttctc aagcgctgaa agcttttgga agggattgga
1051 cggcaattgg gcacaaatga gatatcctac agatcataca tgtgtggcag
1101 gcttaccagt tgaagactgt ggcagagttg cagcgataat gacacacagt
1151 attttaccgt gctataagat aacctgccct acctgtgctc aacaatatgc
1201 caacttgcca gccagtgact tacttaagat actacacaag cac