Sequence of DPV Bidens mottle virus

Bidens mottle virus gene for polyprotein (NIb polymerase and coat protein region), partial cds, strain: garland chrysanthmum.

ACC No: AB491763

Dated: 2012-02-22 | Length: 1780 | CRC: -33311169

                ID   AB491763; SV 1; linear; mRNA; STD; VRL; 1780 BP.
XX
AC   AB491763;
XX
DT   01-JUL-2009 (Rel. 101, Created)
DT   22-FEB-2012 (Rel. 111, Last updated, Version 2)
XX
DE   Bidens mottle virus gene for polyprotein (NIb polymerase and coat protein
DE   region), partial cds, strain: garland chrysanthmum.
XX
KW   .
XX
OS   Bidens mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1780
RA   Chen Y.;
RT   ;
RL   Submitted (23-MAR-2009) to the INSDC.
RL   Contact:Yuh-Kun Chen National Chung Hsing University, Plant Pathology; 250
RL   Kuo Kuang Road, Taichung 402, Taiwan
XX
RN   [2]
RA   Chen Y.K., Lee J.Y.;
RT   "First Report of Bidens mottle virus Causing Mosaic and Leaf Deformation in
RT   Garland Chrysanthemum and Lettuce in Taiwan";
RL   Plant Dis. 96:464-464(2012).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1780
FT                   /organism="Bidens mottle virus"
FT                   /host="Chrysanthemum coronarium (garland chrysanthumum)"
FT                   /lab_host="Chenopodium quinoa or Chrysanthemum coronarium"
FT                   /strain="garland chrysanthmum"
FT                   /mol_type="mRNA"
FT                   /country="Taiwan:Chiayi, Potzu"
FT                   /collected_by="Yuh-Kun Chen"
FT                   /collection_date="Oct-2007"
FT                   /identified_by="Yuh-Kun Chen"
FT                   /db_xref="taxon:433357"
FT   CDS             <1. .1426
FT                   /codon_start=2
FT                   /transl_table=1
FT                   /product="polyprotein"
FT                   /note="contains partial NIb polymerase and full coat
FT                   protein"
FT                   /db_xref="GOA:C5NSV1"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:C5NSV1"
FT                   /protein_id="BAH80554.1"
FT                   /translation="STVVDNSLMVVLAMHYAFVREGIPYCEIENVCKFFVNGDDLLIGV
FT                   NPEHEEILDRLGGHFSDLGLNYDFSSRTRDKSELWFMSHKGLKCEGIYIPKLEEERIVS
FT                   ILQWDRATTPENRLEAICAAMIEAWGYPELIHQIRRFYKWLLEQEPFATIASEGNAPYI
FT                   SSLALRRLYLNEHIEDDELEAYLKTFAELDDEFECDTFEVHHQAKDEEKIDAGDPAKKK
FT                   EQIPPPENKAITKGKDKDINAGTSGTMTVPRIKAITTKMRLPKARGSVVLNLDQLLEYR
FT                   PQQVDLSNTRATQEQFSLWYEYVKNSYDVSDTEMATLMNGLMVWCIENGTSPNINGEWV
FT                   MMDGESQVTYPLKPVIEGAKPTLRQIMAHFSDVAEAYIELRNTKEAYMPRYGLIRNLRD
FT                   MSLARYAFDFYEITSRTPNRAREAHIQMKAAALKSAQSRLFGLDGGISTQQENTERHTT
FT                   EDVNSDMHTLLGVRNM"
FT   mat_peptide     <1. .619
FT                   /product="NIb polymerase"
FT   mat_peptide     620. .1423
FT                   /product="coat protein"
FT   3'UTR           1427. .1780
XX
SQ   Sequence 1780 BP; 558 A; 340 C; 403 G; 479 T; 0 other;

ab491763 Length: 1780  22-FEB-2012  Type: N  Check: 8329  ..

       1  atcaacagtg gtagacaatt cgctaatggt cgtcctagct atgcattatg
      51  cttttgttag agagggcatt ccctattgtg aaattgaaaa cgtctgtaaa
     101  ttctttgtca atggagatga tcttctaatt ggtgtaaatc cagaacatga
     151  ggaaatcttg gaccgtctcg gaggacattt cagtgactta ggtctcaact
     201  atgatttttc ctctagaaca agagacaaat ctgagctatg gtttatgtca
     251  cataagggtc ttaaatgtga agggatttac ataccaaagc tcgaagagga
     301  aagaattgtc tccatactcc aatgggatcg cgcaacaaca ccagaaaaca
     351  gactagaagc aatctgcgca gcaatgatag aagcatgggg ctatcctgag
     401  ttaatccacc agatcaggcg attttacaaa tggttattag aacaagagcc
     451  attcgccaca attgcttcag agggtaatgc accatacatc tcatctctgg
     501  ccttgaggag gctgtatctt aacgaacaca ttgaggatga tgagttagag
     551  gcatacctca aaacatttgc ggaactggat gatgagtttg aatgtgacac
     601  ttttgaagtt caccatcaag caaaagatga agaaaagatc gatgcaggag
     651  atccagcaaa gaaaaaggag caaattcctc ctcctgagaa taaagcaata
     701  accaagggaa aagacaagga tatcaatgca ggaacttcag gaacaatgac
     751  agtgccacgt attaaagcta taacaaccaa aatgcgtttg ccgaaggcca
     801  gagggtcagt tgtccttaac ttggaccagt tactggagta tcgacctcaa
     851  caagtagatt tgtcaaacac tcgagcaacg caagaacaat tcagtctgtg
     901  gtacgagtat gttaagaact cgtatgatgt ctccgatact gaaatggcaa
     951  cactcatgaa tggattaatg gtgtggtgca tcgaaaatgg aacatcacct
    1001  aacattaatg gagaatgggt gatgatggat ggagaatcac aggtcacata
    1051  tcccttaaaa cctgtgatag aaggagccaa accaaccctt cgacaaatta
    1101  tggctcactt ctccgatgta gctgaagcat acatcgaact gcgtaacaca
    1151  aaagaggcgt atatgccacg atacggcctc attcgaaatt tgcgtgatat
    1201  gagtttagct cgttacgcat ttgacttcta tgagataact tctcgcacac
    1251  ccaaccgagc acgtgaagca catatacaaa tgaaagcagc agcacttaaa
    1301  tctgcacaat cacgtttgtt tggcttggat ggtggcatca gtacacaaca
    1351  agagaacaca gagaggcata ctacagaaga tgtaaactct gatatgcaca
    1401  cactacttgg agtgcgcaac atgtaaagcg cgtatgccta ctgggatgaa
    1451  aagcaaatat atatagtgta tattgtatat ttcagtgtct ttgtactatt
    1501  tgaaagcgtt aaccttatgt agcacataat aatgaggtat tggggtggct
    1551  tacgcatttc gtgcatgagg tgaactcata tctcttagtc tttaatgtct
    1601  gtttgaggtg gctcatgtat tctgtacatg aggtgaactc ttttggaggt
    1651  ggcttacgta ttccgtacgt gaggtgaact ctttgtgtgc tttattttgt
    1701  gtgtctttct ctgtctcttc ttcaagtgta ggtggcctat gtatttcgta
    1751  catagggtga ctgcaattgc tgaaagcgag