Sequence of DPV Cucumber mosaic virus
Cucumber mosaic virus RNA 1, complete sequence, strain: LiCB.
ACC No: AB506798
Dated: 2009-06-10 | Length: 3396 | CRC: -1988834959
ID AB506798; SV 1; linear; genomic RNA; STD; VRL; 3396 BP.
XX
AC AB506798;
XX
DT 10-JUN-2009 (Rel. 101, Created)
DT 10-JUN-2009 (Rel. 101, Last updated, Version 1)
XX
DE Cucumber mosaic virus RNA 1, complete sequence, strain: LiCB.
XX
KW .
XX
OS Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC Cucumovirus.
XX
RN [1]
RP 1-3396
RA Chung B.N., Yoon J.Y.;
RT ;
RL Submitted (05-JUN-2009) to the EMBL/GenBank/DDBJ databases.
RL Contact:B N Chung National Institute of Horticultural & Herbal Science,
RL Horticultural & Herbal Crop Environment Division; 540-41, Tap-dong,
RL Kwonsun-gu, Suwon 441-440, South Korea
XX
RN [2]
RA Chung B.N., Yoon J.Y.;
RT "Characterization and sequence analysis of two cucumber mosaic virus
RT isolated from lily";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3396
FT /organism="Cucumber mosaic virus"
FT /segment="RNA 3"
FT /strain="LiCB"
FT /mol_type="genomic RNA"
FT /country="South Korea"
FT /isolation_source="Lily"
FT /db_xref="taxon:12305"
FT 5'UTR 1. .94
FT CDS 95. .3076
FT /codon_start=1
FT /transl_table=1
FT /gene="1a"
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="BAH70363.1"
FT /translation="MATSSFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGR
FT KVYIRNVLGVKDSEVIRNRYGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGL
FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHAERLMNMRKIILNDPQQFDGRQ
FT PDFCTQPAADCKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDH
FT GVIPELNCQWRKIRSAFSETEDVTPLVGKLNSTVFSRVRKFKTLVAFDFINESTMSYVH
FT DWENIKSFLTDQTYSYRGMTYGIERCVIHAGIMTYKIIGVPGMCPPELIRHCIWFPSIK
FT DYVGLKIPASQDLVEWKTVRILTSTLRETEEIAMRCYNDKKAWMEQFKVILGVLSAKSS
FT TIVINGMSMQSGERIDINDYHYIGFAILLHTKMKYEQLGKMYDMWNASSISMWFTALTR
FT PVRVFFSNVVHALFPTLRPREEKEFLIKLSTFVTFNEECSFDGGEEWDVISSAAHVAAQ
FT AVTDGKILAAQKAEKLAEKLAQPVREVSDSPETSSQTSDDTADVCGEEREVSELDSLSA
FT QTRSPITRIAGRATAMLEYAAYEKQLHDTTVSNLKRIWNSAGGDDRRNSLEGNLNFVFD
FT TYFSVDPMVNIHFSTGRWMRPVPEGIVYSVGYNERGLGPKSDGELYIVNGECVICNSES
FT LSTVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFNS
FT SDSKEACAFVRTADSVLLNECPSVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSE
FT QIAFSSRDASFDMRFSKIIPDETSDADTTFRSPQDVVPLVRLMATKALPRGTHSKYTKW
FT VSQSTVRRSVTSRAIASVTVVDLDPSRFYITMTQADKASLISRAKEMNLPKTFWNERIK
FT TVHESQGISEDHVTLVRLKSTKCDLFKQFSYCLVALTRHKVTFRYEHCGVLNGDLIAEC
FT VARA"
FT 3'UTR 3077. .3396
XX
SQ Sequence 3396 BP; 840 A; 768 C; 826 G; 962 T; 0 other;
ab506798 Length: 3396 10-JUN-2009 Type: N Check: 2870 ..
1 gtttatttac aagagcgtac ggttcaatcc ctgcctcctc tgtaaaacta
51 ccctttgaaa acctctcttc tctaatcttt tctttgtaat tcctatggcg
101 acgtcctcgt tcaatatcaa tgaattggta gcctcccacg gcgataaagg
151 actactcgcg accgccctcg ttgataagac agctcatgag cagctcgagg
201 agcaattaca gcatcaacgt aggggccgta aggtctacat ccgaaacgtt
251 ttgggtgtaa aggattccga ggtcatccgg aatcggtatg gaggaaagta
301 cgacctccat cttacccagc aggagtttgc tccccacggc ctagctggtg
351 ccctccgctt gtgtgaaact ctcgattgtc tagactcttt cccttcatca
401 ggtctgcggc aggacctcgt cttagacttc ggaggaagtt gggtcacaca
451 ttacctccgc ggacataacg tacactgttg ttccccttgt ttgggtatcc
501 gcgataagat gcgccatgcg gaacgtttaa tgaacatgcg caagatcatc
551 ttgaacgatc cacaacagtt cgatggtcgg cagccggatt tctgcactca
601 accggctgcg gattgcaaag tacaagccca ctttgctata tctattcacg
651 gaggttatga tatgggcttt agaggattat gtgaagcgat gaatgctcac
701 ggaaccacta ttttgaaggg aacgatgatg ttcgatggtg cgatgatgtt
751 tgacgaccac ggtgtaatac ccgaacttaa ttgtcagtgg aggaagatca
801 ggagtgcttt ctccgaaact gaagacgtca cgccactggt tggtaagctt
851 aattccacag ttttctcccg cgtgcggaag ttcaagacgc tggtagcctt
901 tgatttcatc aacgagtcta ccatgtctta tgttcatgat tgggagaaca
951 taaaatcttt tcttacggac cagacttatt cgtaccgagg gatgacttac
1001 ggtatcgaac gttgcgttat tcacgctggt attatgacgt acaagattat
1051 cggcgtacct gggatgtgtc cacccgaact cattcgacat tgtatttggt
1101 tcccctctat taaagactat gttggtctaa agattcccgc gtcgcaggac
1151 ttggttgagt ggaaaacagt gcggatttta acgtcaacat tacgtgagac
1201 tgaagagatt gctatgaggt gttataatga taagaaagcg tggatggaac
1251 aattcaaggt tatcctaggt gttctatccg cgaaatcatc taccattgtt
1301 attaatggta tgtccatgca atctggcgag cgaatagata ttaatgacta
1351 tcattacatc ggtttcgcca ttcttcttca cacaaaaatg aagtatgaac
1401 aacttggaaa aatgtatgat atgtggaatg cttcgagtat ttcgatgtgg
1451 ttcaccgcgc tgactcgccc ggtgcgcgtg tttttctcca atgttgttca
1501 cgcactattc ccgactttga gaccccgcga ggaaaaagaa ttcctgatca
1551 agctctccac cttcgtgact tttaatgaag agtgctcatt tgacggtgga
1601 gaggaatggg acgtgatatc atccgctgca catgttgccg cgcaggctgt
1651 taccgatggg aagattttgg ctgcgcagaa agccgagaag cttgctgaaa
1701 agcttgcaca acccgtaaga gaggtatcgg acagtcctga gacgtcatct
1751 caaacgtctg atgatactgc tgatgtttgt ggagaggagc gagaggtttc
1801 ggaactcgac tccttatcag ctcagacgcg ttcccccatc actagaattg
1851 ccggaagagc tactgctatg ttagagtatg ctgcttatga gaaacaatta
1901 cacgacacca cggtgtctaa tttaaaacgt atttggaact cggcgggcgg
1951 tgatgacaga agaaactccc tcgagggtaa tctgaatttt gtttttgata
2001 cgtatttctc cgttgatcct atggtgaaca ttcatttctc cacaggtcgg
2051 tggatgcgtc ctgtgcccga gggtattgtt tattctgttg gttataatga
2101 acgcggttta ggtccgaagt ctgatggaga gctttacatt gtcaatggtg
2151 aatgcgtgat ttgtaacagt gagtctttat ctactgtcac gcgttctctt
2201 caagctccga ccgggaccat tagtcaagtt gacggagttg ctggttgcgg
2251 gaaaaccaca gcaattaaat ccatttttga gccgtccact gacatgattg
2301 ttaccgcgaa caagaagtcc gcccaagatg tacgtatggc acttttcaat
2351 tcgtcggatt ccaaagaagc ttgcgccttt gttcgaacag ccgattccgt
2401 cctacttaat gaatgtccga gtgttagtag ggttttggtt gatgaggtcg
2451 ttttgctaca ctttggtcaa ttatgtgccg tcatgtctaa gttgaaggct
2501 gtgcgagcta tatgttttgg ggattcggag cagattgctt tttcctcgcg
2551 cgatgcctcc tttgacatgc gtttctctaa gattattcct gatgaaacta
2601 gtgatgctga caccacattc cgtagcccac aagatgttgt accgcttgtg
2651 cgtttaatgg ctacgaaggc ccttccgaga gggacccatt caaaatacac
2701 gaaatgggtt tctcaatcta cagtgagaag atctgttaca tctcgtgcca
2751 tcgctagcgt gacagtggtt gacttggatc cttccaggtt ctacataact
2801 atgacccaag ctgataaggc ctcactgatt tcaagggcga aagagatgaa
2851 tctaccaaag actttctgga atgaaaggat taaaaccgtg catgagtctc
2901 aaggtatctc cgaagaccac gttactttgg taagattaaa gagtacaaaa
2951 tgtgacctgt ttaaacagtt ttcttactgt ctcgttgcac tgactagaca
3001 caaggtcaca ttccgctacg agcactgtgg tgtgttgaac ggcgatttaa
3051 tcgccgaatg tgttgctcgt gcctagcggc ctccctcccg cgggagaccg
3101 ctcctccctc cgttcatggc gggagctgag ttggcagtat tgctctaaac
3151 tgtctgaagt cactaaacac agtgtgtcac tgtacacatt gtggtgaacg
3201 ggttgtccat ccagcttacg gctaaaatgg tcagtcgtgg agaaatctac
3251 gccagtagac ttacaagtct ctgaggcacc cttgaaacca tctcctaggt
3301 ttcttcggaa ggacttcggt ccgtgtactt ctagcacaat gtgctagttt
3351 agggtacggg tgtcccccac tttcgtgggc cttcaaaagg agacca