Sequence of DPV Cymbidium mosaic virus

Cymbidium mosaic virus CP gene for coat protein, complete cds, strain: ONK22.

ACC No: AB541569

Dated: 2012-03-15 | Length: 672 | CRC: -1057686195

                
ID   AB541569; SV 1; linear; genomic RNA; STD; VRL; 672 BP.
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AC   AB541569;
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DT   18-JAN-2010 (Rel. 103, Created)
DT   15-MAR-2012 (Rel. 112, Last updated, Version 3)
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DE   Cymbidium mosaic virus CP gene for coat protein, complete cds, strain:
DE   ONK22.
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KW   .
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OS   Cymbidium mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC   Alphaflexiviridae; Potexvirus.
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RN   [1]
RP   1-672
RA   Choi S., Yoon J., Chung B.;
RT   ;
RL   Submitted (12-JAN-2010) to the INSDC.
RL   Contact:Seung-Kook Choi Myong-Ji University, Bioinformatics and
RL   Biosciences; Namdong, Cheoin-gu, Yong-In, Gyeonggi-do 449-728, SOUTH KOREA
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RN   [2]
RC   DOI:10.1007/s11262-011-0683-8
RA   Yoon J.-Y., Chung B.-N., Choi G.-S., Choi S.-K.;
RT   "Genetic variability in the coat protein genes of Cymbidium mosaic virus
RT   isolates from orchids";
RL   Virus Genes 44:323-328(2011).
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FH   Key             Location/Qualifiers
FH
FT   source          1. .672
FT                   /organism="Cymbidium mosaic virus"
FT                   /host="Oncidium sp."
FT                   /lab_host="Nicotiana tabacum cv. Samsun"
FT                   /strain="ONK22"
FT                   /mol_type="genomic RNA"
FT                   /country="South Korea:Choong-Nam"
FT                   /collected_by="Bong-Nam Chung"
FT                   /collection_date="02-Oct-2007"
FT                   /identified_by="Bong-Nam Chung"
FT                   /db_xref="taxon:12178"
FT   CDS             1. .672
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:D2KZH7"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:D2KZH7"
FT                   /protein_id="BAI66590.1"
FT                   /translation="MGEPTPTPAATYSAADPTSAPKLADLAAIKYSPVTSSIATPEEIK
FT                   AITQLWVNNLGLPADTVGTAAIDLARAYADVGASKSATLLGFCPTKPDVRRAALAAQIF
FT                   VANVTPRQFCAYYAKVVWNLMLATNDPPANWAKAGFQEDTRFAALDFFDAVDSTAALEP
FT                   AEWQRRPTDRERAAHSIGKYGALARQRIQNGNLITNIAEVTKGHLGSTNTLYALPAPPT
FT                   E"
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SQ   Sequence 672 BP; 130 A; 244 C; 159 G; 139 T; 0 other;

ab541569 Length: 672  15-MAR-2012  Type: N  Check: 1623  ..

       1  atgggagagc ccactccaac tccagctgcc acttactccg ctgccgaccc
      51  cacttctgca cccaagttgg ccgacctggc tgccattaag tactcacctg
     101  tcacctcctc catcgccacc cccgaagaaa ttaaggccat aacccaattg
     151  tgggttaaca accttggcct ccccgccgac acagtaggta ccgcggccat
     201  tgacctggct cgcgcctacg ctgacgtcgg ggcgtccaag agtgctaccc
     251  tgcttggttt ctgccctacg aaacctgatg tccgtcgcgc cgctcttgcc
     301  gcgcagatct tcgtggccaa cgtcaccccc cgccagtttt gcgcttatta
     351  cgcaaaagtg gtgtggaatc tgatgctggc cactaacgat ccgcccgcca
     401  actgggccaa ggctggtttc caggaagata cccggtttgc cgcccttgac
     451  ttcttcgatg ccgtcgattc cactgccgcg ctggagcctg ctgaatggca
     501  gcgccgccct actgaccgtg aacgtgctgc gcactcgatc gggaagtacg
     551  gcgcccttgc ccgccagcgt atccagaacg gcaaccttat caccaacatt
     601  gccgaggtca ccaagggcca tcttggctcc accaacactc tctatgctct
     651  gcccgcaccc cctactgaat aa