Sequence of DPV Poinsettia mosaic virus
Poinsettia mosaic virus genomic RNA, complete genome, isolate: JN.
ACC No: AB550788
Dated: 2010-08-13 | Length: 6095 | CRC: -135520849
ID AB550788; SV 1; linear; genomic RNA; STD; VRL; 6095 BP.
XX
AC AB550788;
XX
DT 13-AUG-2010 (Rel. 105, Created)
DT 13-AUG-2010 (Rel. 105, Last updated, Version 1)
XX
DE Poinsettia mosaic virus genomic RNA, complete genome, isolate: JN.
XX
KW .
XX
OS Poinsettia mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC Tymoviridae; unclassified Tymoviridae.
XX
RN [1]
RP 1-6095
RA Okano Y., Yamaji Y., Oshima K., Namba S.;
RT ;
RL Submitted (16-MAR-2010) to the EMBL/GenBank/DDBJ databases.
RL Contact:Shigetou Namba The University of Tokyo, Graduate School of
RL Agricultural and Life Sciences; Yayoi 1-1-1, Bunkyo-ku 113-8657, Japan
XX
RN [2]
RA Okano Y., Maejima K., Shiraishi T., Hashimoto M., Senshu H., Ozeki J.,
RA Takahashi S., Komatsu K., Yamaji Y., Namba S.;
RT "Genetic heterogeneity found in the replicase gene of poinsettia mosaic
RT virus isolates";
RL Arch. Virol. 155:1367-1370(2010).
XX
FH Key Location/Qualifiers
FH
FT source 1. .6095
FT /organism="Poinsettia mosaic virus"
FT /host="Euphorbia pulcherrima"
FT /isolate="JN"
FT /mol_type="genomic RNA"
FT /country="Japan"
FT /collection_date="1987"
FT /db_xref="taxon:113553"
FT 5'UTR 1. .83
FT CDS 84. .6044
FT /codon_start=1
FT /transl_table=1
FT /product="replicase-associated protein"
FT /protein_id="BAJ14665.1"
FT /translation="MAFQDAINNLSSTVHRDTVAAPLLESIAQPLRDSLQLYPWAINAE
FT KLDLLKKFGISVSGLGHQAHPHPFHKIIETHLLFQHWSHNCREDSTVLFMKPEKFQKLA
FT SFNPHFKHLLNYRLHAKDTTRYPETACSLPTTSTVFMHDALMYYKPSQIMDLFLRIPNL
FT NNLYASVVVPAESSFTDHSLYPEVYQYKTIRSHLHYVPESNHSSAYNQPADALLWLELS
FT TIQGPSFSLTVTRLDSWGPCHSLLIQRGIPPAHVVNDFVSFDVPAAVLLPEATSIRQPT
FT RHRLVPQSVYNALFTYTRAVRTLRISDPVGFVRTQSNKPEHAWVTSSAWDNLQHFSLLT
FT ASNRPSNSYSWNGSLWQRFISRLQTVVAELKSSAIFTSSITTFLFSLLFQYFRRKSATS
FT RSLPSDLGFRNLDEHVKLHEGLLQAGFSYTHTSQTRQGPRDFYHRAAERFKFMSALVRS
FT ISLSLPLLAFAIYSKCTQPMPPQSLHDSYHNYHHPSKWVLGWSRRLTVVTPEAFLPFEP
FT VPIPADQLPPQWTPAPLQSLLISPQMRNSSGAGSTASFTATDITITITASAFSPATPTP
FT LKGCPLSAPITCLTSVEQRTLANTKPLILMTKRRRRSRTLAPSRARLRTQGCACSARGA
FT LKVLQPATAKKADPAPQKTRRINTYSLMGADQVYPSMSMVTSSQSPTRSCPRKSASLWS
FT THRLWAVRLRTLYPANYIGTSADFLTRLRNGPPSRVPIPVNQSCLLVAISKATSISLEE
FT LWKTLAALLPDSLLLPEDITTRGLSTDHFVVLASAHSLKCIFISGALELELGLHNAHHS
FT FTIKHTSSANQLPHFELVADGTRALRGAASDTKELNRAALGFKFKNAFLPFRKVHVSTE
FT PDRAKNLISNMKNGFDGVLANIDPNHPHEARDRLLALDGSIEVHAPRKVSLIHLAGFPG
FT CGKTKPIQALLKTSLFADYKVAVPTVELRAEWKADLALKTGQAWRLSTWESSLLKTASI
FT LVIDEVYKMPRGYVDLAVAADPTVRFVILLGDPLQGEYHSSHPESQNKRLSSEIHRLLK
FT YIDCYCLWSHRIPQCVARCFGVESSNEHEGYVGFSSFIAPQDITLACSQSSAKTLRDAG
FT YPATTVSSSQGSTYRTPINLLLDRNSRRLSSAVSLVAATRSTMAINMTGDRDVLQQGPH
FT NNPVFSALYNANLISLHSLFPTLFAKLPIIRTAITSRRGMLTGGNTFGEDDVIIDSRRP
FT GPLNAPEVDDAFLPTWRRPLHRNLASAVHSNCPAQSTHVSPATITAVYPGESFENLAAH
FT FLPAHDPEIKEILHRGEFSAQFPILLNQDFSLSAQSSTLIAAKHDSKRDPTLLVASITK
FT RLRFRPSDSSYQLSSKDQILGLTLYHSWCRAYNRHPQAVVPFDELLFAECININEFAQL
FT SNKTKSTIIANASRSDPDWRITAVKIFSKTQHKINEASIFGSWKACQTLALMHDYVVLF
FT LGPVKKYQRIFDSQERPANVYYHAGHSPLEMSEWAQKHLRSGISHTNDYTAFDQSQHGE
FT AVVFEMAKMRRLSIPESLINLHSYLKRNVDTQFGPLTCMRLTGEPGTYDDNTDYNLAVI
FT YSKYLVLDHPIMVSGDDSVIGGNPTVSRNWPAIEKLLALRFKTESTKHPLFCGYYVGPA
FT GAIRSPVTLFAKIMSAVDDLSIDDKLASYLSEFAIGHSLGHDFWDLLPIDQVPYQSAVY
FT DFFCRHASREQKQILNIGEVPDTVLSSIASHLRFASRALYCLLPSSVRRALTSKKTVTD
FT AFEDPDVSHMQGELLQNFQESNLTKLRGADMSDQVVKQLESNHVDSTPSLIPRPPFQGG
FT SRTVPFQTVAMDVVAAGGNATFNLAGHVSLSEITAPYRKARLAELKAIVCPTAASFQSP
FT ITLDLVWSTNNVIFTDLQILQVYGGTRFAIGGPLLSHTYELRADLSYLNPVIKDSVSYV
FT DTPKLTLNASDPTGSGSTATTVATVLVSGKLMFPTHWPHPHPSSRSLIQQCFG"
FT CDS 5442. .6044
FT /codon_start=1
FT /transl_table=1
FT /gene="CP"
FT /product="coat protein"
FT /note="putative start site from sg RNA"
FT /protein_id="BAJ14666.1"
FT /translation="MSDQVVKQLESNHVDSTPSLIPRPPFQGGSRTVPFQTVAMDVVAA
FT GGNATFNLAGHVSLSEITAPYRKARLAELKAIVCPTAASFQSPITLDLVWSTNNVIFTD
FT LQILQVYGGTRFAIGGPLLSHTYELRADLSYLNPVIKDSVSYVDTPKLTLNASDPTGSG
FT STATTVATVLVSGKLMFPTHWPHPHPSSRSLIQQCFG"
FT 3'UTR 6045. .6095
XX
SQ Sequence 6095 BP; 1308 A; 2109 C; 1307 G; 1371 T; 0 other;
ab550788 Length: 6095 13-AUG-2010 Type: N Check: 1393 ..
1 ggaaatacac atctccagtc agctccttta cgcaactgac ttttatttat
51 ccatcatctg tttgtttgcc cccggtatat cccatggcat tccaagacgc
101 tatcaacaac ctatccagca ccgtccaccg cgacacggtt gccgcacctc
151 tcttagagag cattgcccaa cctctccgcg actctcttca attatatccc
201 tgggcgatca acgccgagaa acttgacctg ctgaagaaat ttggcatttc
251 tgtctccggc ctgggtcatc aagcccaccc tcatccgttc cacaagatca
301 tcgaaacgca tctccttttc caacattgga gccacaactg tcgagaggac
351 tccacagtgc ttttcatgaa gcccgaaaaa ttccaaaaac tcgcctcttt
401 caaccctcac ttcaagcatc ttctcaacta ccgccttcac gccaaggaca
451 ccacccgcta tccagaaacc gcgtgcagtc tccccaccac ttccaccgtg
501 ttcatgcatg acgccttgat gtactacaaa ccttcccaga tcatggatct
551 gttcctccgc attccaaacc tcaacaacct ctacgcttcc gtggtggttc
601 ccgcggagag ctcattcacc gaccattcct tataccccga ggtttaccag
651 tataagacta tcaggagcca tctccactac gtccctgagt ccaatcactc
701 ctcggcttac aatcaacctg ccgacgccct tctctggctc gagctttcga
751 ccatccaagg gccctccttc tccctcaccg tcaccaggct cgactcttgg
801 ggcccgtgtc actcgcttct gatccaacgc ggcataccac cagcccacgt
851 tgtcaatgac ttcgtcagct tcgacgtgcc agccgccgtt cttctccccg
901 aggccaccag cattcgtcaa cccacccgtc atcgcctagt gcctcaatct
951 gtgtacaacg ctctgtttac ttacactcga gccgttcgga ctctgcgcat
1001 ctccgatcca gtcggcttcg ttcgcacaca gtccaacaag ccagagcacg
1051 cctgggtcac gtcctccgcc tgggacaatc tccagcactt ttctctcctc
1101 actgcctcta accgtccttc caactcctat tcctggaatg gcagcctctg
1151 gcagcgcttc atctctcgcc tgcaaacagt ggtcgctgag ttgaaatctt
1201 cagccatctt cacttcctcc atcaccacgt tcctcttctc tctccttttc
1251 cagtacttcc gtcgaaaatc tgccacctct aggtctttgc ctagcgacct
1301 cggtttccgg aatctggacg agcacgttaa gctccatgaa ggcctcctcc
1351 aggctggttt tagttataca cacacttccc aaacccgcca agggcctcga
1401 gatttctacc acagggccgc tgagcgattc aaattcatgt ccgccctcgt
1451 tcgttccatc tccctctctc tccccctgct tgcgttcgcc atctattcca
1501 agtgcacgca gcccatgccc cctcagagcc ttcacgattc ctaccacaac
1551 taccatcatc caagcaagtg ggtccttgga tggagtcgcc ggctcaccgt
1601 ggtcactccc gaggccttcc tgcctttcga acctgttcca atccctgcgg
1651 accaattgcc gccacaatgg accccggccc ccctccagag cctgttgatc
1701 tcgcctcaga tgagaaactc ctctggtgcc ggcagcacgg cgtcgttcac
1751 ggccaccgac atcaccataa caataacggc ctccgcattt tcccctgcca
1801 cacctacacc gctgaaggga tgtccattat ctgcaccgat tacttgcctg
1851 acttcagtgg aacagagaac cctggccaac accaagccgc tcatcctgat
1901 gaccaagagg cgcaggcgga gccgcaccct tgccccctct cgcgcccgtc
1951 tcagaaccca aggctgcgcc tgctcagccc gcggagcctt gaaggtcctt
2001 cagcccgcca ccgccaagaa ggccgatcca gcaccccaaa aaactcgacg
2051 tatcaacacc tactctctga tgggggccga tcaagtgtac ccgtcgatga
2101 gcatggtgac ctcctcccaa tctcccacga ggagctgtcc tcggaaatca
2151 gccagcttat ggtcgaccca ccgcttatgg gcggtcagac ttcgcacact
2201 ctaccccgcg aactatatag gaacctccgc tgacttcctc actcgcctcc
2251 gcaacggccc cccaagccgt gtcccaatcc cagtgaacca gagttgcctc
2301 ttagtggcaa tcagcaaagc cacctccatc tcgctcgaag agttgtggaa
2351 gaccctcgct gccctcctgc ccgattctct cctgttgcct gaggacataa
2401 cgacccgcgg cctctccacg gaccacttcg tagtcttggc ttccgcccac
2451 tctttgaagt gcattttcat ctccggggcg ctcgagctcg agttaggcct
2501 ccacaacgca caccactcct tcacaatcaa gcacacaagc tcggctaatc
2551 aactgccaca cttcgagctc gtcgcggatg ggacccgggc ccttcgaggc
2601 gccgccagcg atacgaagga attgaaccgg gccgccctgg gtttcaaatt
2651 caagaacgcc ttcctcccgt ttcgcaaagt ccatgtctcc acggaacccg
2701 atcgcgccaa gaatctcatc tcaaacatga agaatggctt cgatggtgtc
2751 ctcgccaaca ttgacccgaa ccacccgcat gaagcccgtg accgcctcct
2801 tgcccttgac ggcagtattg aagtgcacgc ccccagaaag gtaagtctga
2851 ttcacctagc cgggtttcca ggctgcggaa agaccaagcc catccaggcc
2901 ctcctcaaga cgagcctatt tgcggattac aaagtggcag tgcccaccgt
2951 ggagttacgc gccgagtgga aagctgatct ggcgctcaaa accggccagg
3001 cttggagact ctccacttgg gagtcatcct tgctcaagac cgcctccatt
3051 cttgtcattg atgaggtgta caaaatgccc cgcggttacg tggatttggc
3101 ggtagcagct gatcctaccg tccgttttgt cattcttttg ggtgaccccc
3151 ttcaaggcga gtatcacagc tcccatccgg aatcccagaa taagcggctc
3201 tcctcggaga tccacaggct gctcaagtac atcgactgtt attgcctctg
3251 gtctcaccga atccctcaat gcgtcgcccg ctgtttcggg gttgagagct
3301 caaacgagca cgaaggttac gtgggcttca gctcctttat cgcacctcag
3351 gacatcaccc tcgcttgctc gcagagctca gccaagacct tgcgcgacgc
3401 cgggtaccct gccaccaccg tcagtagctc tcaaggttcc acttaccgca
3451 ccccaatcaa tcttctcctc gacagaaaca gtcgcagact gagcagcgcc
3501 gtctcgctgg tcgccgccac tcgttctacc atggccataa acatgacggg
3551 cgatcgggat gttctacaac agggcccaca caacaacccg gtgttctctg
3601 cgctttacaa cgccaatctg atatccctgc acagcctgtt cccaacgctt
3651 ttcgcgaagt tgccgatcat acgcaccgcg atcaccagtc gcaggggcat
3701 gctgaccggt ggcaacacct ttggtgagga cgacgttatc attgattcaa
3751 gacgtccagg cccgctgaat gctccagagg tcgacgatgc tttcctcccg
3801 acttggcgac gccctcttca ccggaatctt gcctctgctg ttcacagcaa
3851 ttgcccggcc caatccactc acgtctctcc ggccaccatc actgcggttt
3901 atcctggtga atcctttgag aatctcgcag cacatttcct ccccgctcac
3951 gaccccgaga ttaaggagat cttgcaccgc ggcgagttca gcgcgcagtt
4001 tccgattctc ctgaaccagg atttctctct ctccgcgcag tcttccacgt
4051 tgatcgcggc taagcatgac tccaagcgcg acccgacgct gctcgtcgcc
4101 tccattacca agcgcctccg tttccgccct agcgactctt cgtaccagct
4151 ctcctccaag gaccaaattc tgggcttgac cctctaccac agttggtgcc
4201 gagcttacaa ccgccacccg caggcagtcg ttccattcga tgagttgctg
4251 tttgcggagt gcatcaacat taatgagttc gcgcagctct cgaacaagac
4301 caagagcacg atcattgcga acgccagccg atcggaccct gactggcgca
4351 tcacagccgt caagattttc agcaaaacgc agcacaaaat caatgaagcc
4401 tccatctttg gatcctggaa ggcttgtcag acgctggctc tcatgcatga
4451 ttatgtcgtt cttttcctgg gtccggtcaa gaaataccag cgcatctttg
4501 actctcaaga gcgaccagcc aacgtgtatt accatgctgg ccactcccct
4551 cttgagatgt ccgagtgggc ccaaaagcac ctccgatcag gaatctctca
4601 cactaatgac tacacagcct ttgaccaaag ccagcatggc gaggcagtcg
4651 tcttcgagat ggccaagatg cgccgcttga gcatccccga gagcctcatc
4701 aaccttcatt cgtatctcaa gcgcaatgtt gacacccagt tcgggcctct
4751 aacgtgcatg aggctcaccg gcgaaccagg cacctatgac gacaacacag
4801 actacaacct cgcggtcatt tacagcaagt atctggtcct cgaccaccca
4851 atcatggtgt ccggagatga cagcgtgatt ggcggaaacc caacggtgtc
4901 tcggaactgg cctgccatcg aaaagctgct tgctcttcgc ttcaaaacag
4951 aaagcaccaa acatcccctg ttctgcggat actatgtagg accagccggc
5001 gccatcaggt ctccagtcac ccttttcgca aagatcatga gtgccgttga
5051 cgatctctcg atagacgaca aattggcaag ttacctgtct gagttcgcga
5101 tcgggcactc tctcgggcac gacttttggg atcttctgcc aattgatcaa
5151 gtcccttacc aatccgcggt gtacgacttc ttctgccggc atgcctcgcg
5201 cgaacagaag cagatcctca acatcggaga agtgcctgac acagttctat
5251 caagcatagc tagtcatctc aggtttgcca gccgagccct gtattgtctc
5301 ttgccgtcct cagttcgccg ggctctcaca tccaagaaga ctgtcaccga
5351 cgcttttgaa gatcctgatg tctcgcacat gcagggtgaa ttgcttcaga
5401 acttccaaga atctaaccta accaagctac gaggcgcaga catgtcagac
5451 caagtcgtca aacagctcga atccaaccac gtcgactcca ctccatctct
5501 catcccacgc ccccctttcc aaggcggcag tcgcacagtg cctttccaga
5551 ctgtcgcaat ggacgtcgtc gctgccggcg gcaatgcaac tttcaaccta
5601 gcgggccacg tctcgctttc tgagatcact gcaccgtacc gcaaggcgcg
5651 tctggcggaa ctcaaagcca tcgtctgccc caccgctgcg tccttccaat
5701 ccccgatcac tcttgacctc gtctggagca ccaacaatgt catattcacc
5751 gacctccaga tacttcaggt ctacgggggc acccgctttg ctatcggcgg
5801 gcccctcctc agccacacgt atgagctccg tgctgacctc agctacctca
5851 atcctgtcat caaggactcc gtctcatacg tggacactcc gaagctcact
5901 ctcaacgcct ctgacccaac tgggtctggt tcaaccgcca ccaccgtcgc
5951 caccgtgctg gtgagcggca agctgatgtt tccgacgcat tggccacacc
6001 cacacccctc gagtaggtcc cttattcagc aatgttttgg gtagtggagc
6051 cctctagcct ccaccttttc ctttcctctg gcaatagcgc ctaaa