Sequence of DPV Poinsettia mosaic virus
Poinsettia mosaic virus genomic RNA, complete genome, isolate: JO5.
ACC No: AB550792
Dated: 2010-08-13 | Length: 6106 | CRC: -1563370560
ID AB550792; SV 1; linear; genomic RNA; STD; VRL; 6106 BP.
XX
AC AB550792;
XX
DT 13-AUG-2010 (Rel. 105, Created)
DT 13-AUG-2010 (Rel. 105, Last updated, Version 1)
XX
DE Poinsettia mosaic virus genomic RNA, complete genome, isolate: JO5.
XX
KW .
XX
OS Poinsettia mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC Tymoviridae; unclassified Tymoviridae.
XX
RN [1]
RP 1-6106
RA Okano Y., Yamaji Y., Oshima K., Namba S.;
RT ;
RL Submitted (16-MAR-2010) to the EMBL/GenBank/DDBJ databases.
RL Contact:Shigetou Namba The University of Tokyo, Graduate School of
RL Agricultural and Life Sciences; Yayoi 1-1-1, Bunkyo-ku 113-8657, Japan
XX
RN [2]
RA Okano Y., Maejima K., Shiraishi T., Hashimoto M., Senshu H., Ozeki J.,
RA Takahashi S., Komatsu K., Yamaji Y., Namba S.;
RT "Genetic heterogeneity found in the replicase gene of poinsettia mosaic
RT virus isolates";
RL Arch. Virol. 155:1367-1370(2010).
XX
FH Key Location/Qualifiers
FH
FT source 1. .6106
FT /organism="Poinsettia mosaic virus"
FT /host="Euphorbia pulcherrima"
FT /isolate="JO5"
FT /mol_type="genomic RNA"
FT /country="Japan"
FT /collection_date="2008"
FT /db_xref="taxon:113553"
FT 5'UTR 1. .80
FT CDS 81. .6026
FT /codon_start=1
FT /transl_table=1
FT /product="replicase-associated protein"
FT /protein_id="BAJ14673.1"
FT /translation="MAFQDAINNLSSTVHRDTVAAPFLESIAQPLRDSLQLYPWAINAE
FT KLDLLKKFGISVSGLGHQAHPHPFHKIIETHLLFQHWSHNCREDSTVLFMKPEKFQKLA
FT SFNPHFKHLLNYRLHAKDTTRYPETACSLPTTSTVFMHDALMYYKPSQIMDLFLRIPNL
FT NNLYASVVVPAESSFTDHSLYPEVYQYKTIRNHLHYVPESNHSSAYNQPADALLWLELS
FT TIQGPSFSLTVTRLDSWGPCHSLLIQRGIPPAHVVNDFVSFDVPAAVLLPEATSIRQPT
FT RHRLVPQSVYNALFTYTRAVRTLRISDPVGFVRTQSNKPEHAWVTSSAWDNLQHFSLLT
FT ASNRPSNSYSWNGSLWQRFISRLQTVVAELKSSAIFTSSITTFLFSLLFQYFRRKSATS
FT RSLPSNLGFRSLDEHIKLHEGLLQAGFSYTHTSQTRQGPRDFYHRAAERFKFMSALVRS
FT ISFSLPLLAFAIYSKCTQPMPPQSLHDSYHNYHHPSKWVLGWSRRLTVVTPEAFLPFEP
FT VPIPAEPIAATMDPGPTPGPVDLASDEKLLWCRQHGVVHGHRHHHNNNGLRIFPCHTYT
FT AEGMSIICTDYLPDFSGTEDPGQHQAAHPDDQEAQAEPASLPPLAPVSEPKAAPAQPAE
FT PLKVLQPATAKKADPAPPKTRRINTYSLMGADQVYPVDEHGDLLPISHEELSSEISQLM
FT VDPTAYGPVQTFAQLYPANYIGTSADFLTRLRNGPPSRVPIPVNQSCLLVAISKATSIS
FT LEELWKTLAALLPDSLLLPEDITTRGLSTDHFVVLASAHSLKCIFISGALELELGLHNA
FT HHSFTIKHTSSANQLPHFELVADGTRALRGAASDTKELNRAALGFKFKNAFLPFRKVHV
FT YTTEPDRAKNLISNMKNGFDGVLANIDPNHPHEARDRLLALDGSIEVHAPRKVSLIHLA
FT GFPGCGKTKPIQALLKTSLFADYKVAVPTVELRAEWKADLALKTGQAWRLSTWESSLLK
FT TASILVIDEVYKMPRGYVDLAVAADPTVRFVILLGDPLQGEYHSSHPESQNKRLSSEIH
FT RLLKYIDCYCLWSHRIPQCVARCFGVESSNEHEGYVGFSSFIAPQDITLACSQSSAKTL
FT RDAGYPATTVSSSQGSTYRTPINLLLDRNSRRLSSAVSLVAATRSTMAINMTGDRDVLQ
FT QGPHNNPVFSALYNANLISLHSLFPTLFAKLPIIRTAITSRRGMLTGGNTSAEDDVIID
FT SRRPGPLNAPEVDDTFLPTWRRPLHRNLASAVHSNCPAQSTYVTPATITAVYPGESFEN
FT LAAHFLPAHDPEIKEILHRGEFSAQFPILLNQDFSLSAQSSTLIAAKHDSKRDPTLLVA
FT SITKRLRFRPSDSSYQLSSKDQILGLTLYHSWCRAYNRHPQAVVPFDELLFAECININE
FT FAQLSNKTKSTIIANASRSDPDWRITAVKIFSKTQHKINEASIFGSWKACQTLALMHDY
FT VVLFLGPVKKYQRIFDSQERPANVYYHAGHSPLEMSEWAQKHLKSGISHTNDYTAFDQS
FT QHGEAVVFEMAKMRRLSIPESLINLHSYLKRNVDTQFGPLTCMRLTGEPGTYDDNTDYN
FT LAVIYSKYLVLDHPIMVSGDDSVIGGNPTVSRNWPAIEKLLALRFKTESTKHPLFCGYY
FT VGPAGAIRSPITLFAKIMSAVDDLSIDDKLASYLSEFAIGHSLGHDFWDLLPIDQVPYQ
FT SAVYDFFCRHASREQKQILNIGEVPDTVLSSIASHLRFASRALYCLLPSSVRRALTSKK
FT TVTDAFEDPDVSHMQGELLQNFQESNITKLRGADMSDQVVKQLESNHVDSTPSLIPRPP
FT FQGGSRTVPFQTVAMDVVAAGGNATFNLAGHVSLSEITAPYRKARLAELKAIVCPTAAS
FT FQSPITLDLVWSTSNVIFTDLQILQVYGGTRFAIGGPLLSHTYELRADLSYLNPVIKDS
FT VSYVDTPKLTLNASDPTGSGSTATTVATVLVSGKLIVSDALATPTPLE"
FT CDS 5451. .6026
FT /codon_start=1
FT /transl_table=1
FT /gene="CP"
FT /product="coat protein"
FT /protein_id="BAJ14674.1"
FT /translation="MSDQVVKQLESNHVDSTPSLIPRPPFQGGSRTVPFQTVAMDVVAA
FT GGNATFNLAGHVSLSEITAPYRKARLAELKAIVCPTAASFQSPITLDLVWSTSNVIFTD
FT LQILQVYGGTRFAIGGPLLSHTYELRADLSYLNPVIKDSVSYVDTPKLTLNASDPTGSG
FT STATTVATVLVSGKLIVSDALATPTPLE"
XX
SQ Sequence 6106 BP; 1316 A; 2097 C; 1305 G; 1388 T; 0 other;
ab550792 Length: 6106 13-AUG-2010 Type: N Check: 1205 ..
1 ggaaatacac atctccagtc agctccttta cgcaactgac ttttaatcca
51 tcatctgttt gtttgccccc ggtatatccc atggcattcc aagacgctat
101 caacaaccta tccagcaccg tccaccgcga cacggttgcg gcacctttct
151 tagagagcat tgcccaacct ctccgcgact ctcttcaatt atatccctgg
201 gcgatcaacg ccgagaaact tgacctgctg aagaaatttg gcatttctgt
251 ctccggcctg ggtcatcaag cccaccctca tccgttccac aagatcatcg
301 aaacacatct ccttttccaa cattggagcc acaactgtcg agaggactcc
351 acagtgcttt tcatgaagcc cgaaaaattc caaaaactcg cctctttcaa
401 tcctcacttc aagcatcttc tcaattaccg ccttcacgcc aaggacacca
451 cccgctatcc agaaaccgcg tgcagtctcc ccaccacttc caccgtgttc
501 atgcatgacg ccttgatgta ctacaaacct tctcagatca tggatctgtt
551 cctccgcatt ccaaacctca acaacctcta cgcttccgtg gtggttccgg
601 cggagagctc attcaccgac cattccctat accccgaggt ttaccagtat
651 aagactatca ggaaccatct ccactacgtc cctgagtcca atcactcctc
701 ggcttacaat caacctgccg acgcccttct ctggctcgaa ctttcgacca
751 tccaagggcc ctccttctcc ctcaccgtca ctaggctcga ctcttggggc
801 ccgtgtcact cgcttctgat ccaacgcggc ataccaccag cccacgttgt
851 caatgacttc gtcagcttcg acgtgccagc cgccgttctt cttcccgagg
901 ccaccagcat tcgtcagccc acccgtcatc gcctggtgcc tcaatccgtg
951 tacaatgcac tgtttactta cactcgagcc gttcggactc tgcgcatctc
1001 cgatccagtc ggcttcgttc gcacacagtc caacaagcca gagcacgcct
1051 gggtcacgtc ctccgcctgg gacaatctcc agcacttttc tctcctcact
1101 gcctctaacc gtccttccaa ctcctattcc tggaatggca gcctctggca
1151 gcgcttcatc tctcgcctgc aaacagtggt cgctgagctg aagtcttcag
1201 ccatcttcac ttcctccatc accaccttcc tcttctctct ccttttccag
1251 tacttccgtc gaaaatctgc tacctccagg tctttgccta gcaacctcgg
1301 tttccggagt ttggacgagc acatcaagct ccatgaaggt ctcctccagg
1351 ctggttttag ttatacacac acttcccaaa cccgccaggg gcctcgagat
1401 ttctaccaca gggccgctga gcgattcaaa ttcatgtccg ccctcgttcg
1451 ttccatctcc ttctctcttc cccttctcgc gttcgccatc tactccaagt
1501 gcacgcagcc catgccccct cagagccttc acgattccta ccacaattac
1551 catcatccaa gcaagtgggt ccttggatgg agtcgccggc tcaccgtggt
1601 cactcccgag gctttcctgc ctttcgaacc tgttccaatc cctgcggagc
1651 caatcgccgc cacaatggac cccggcccca ctccagggcc tgttgatctc
1701 gcctcagatg agaaactcct ttggtgccgg cagcacggcg tcgttcacgg
1751 ccatcgacat caccataaca ataatggcct ccgtattttc ccttgccaca
1801 cctacaccgc tgaagggatg tccattatct gcaccgatta cctgcctgac
1851 ttcagtggaa cagaggaccc tggccaacac caagccgctc atcctgatga
1901 ccaagaggcg caggcggagc ccgcatcctt gccccctctc gcacccgtct
1951 cagaacccaa ggctgcgcct gctcagcccg cggagccctt gaaggtcctt
2001 cagcctgcca ccgccaagaa ggccgatcca gcacccccaa aaactcgacg
2051 tattaacacc tactctctga tgggggccga ccaagtgtac cccgtcgatg
2101 agcatggtga cctcctccca atctcccacg aggagctgtc ctcggaaatc
2151 agccagctta tggtcgaccc aaccgcttac gggccggttc agaccttcgc
2201 acaactctac cccgcgaact atataggaac ctccgctgac ttcctcactc
2251 gcctccgcaa cggcccccca agccgtgtcc caatcccagt gaaccagagc
2301 tgcctcttag tggcaatcag caaagccacc tccatctcgc tcgaagagtt
2351 gtggaagacc ctcgctgccc tcctgcccga ttctctcctg ttgcctgagg
2401 acataacgac ccgcggcctc tccacggacc acttcgtagt cttagcttcc
2451 gcccactctt tgaagtgcat tttcatctct ggggcgctcg agctcgagtt
2501 aggcctccac aacgcacacc actccttcac aatcaagcac acaagctccg
2551 ctaatcaact gccacacttc gagctcgtcg cggatgggac ccgggccctt
2601 cgaggcgccg ccagcgatac gaaggaattg aaccgggctg ccctgggttt
2651 caaattcaag aacgccttcc tcccgtttcg caaagtccat gtctacacca
2701 cggaacccga tcgcgccaag aatctcatct cgaacatgaa gaatggcttc
2751 gatggtgtcc tcgccaacat tgacccgaac cacccgcatg aagcccgtga
2801 ccgcctcctt gcccttgacg gcagtattga agtgcacgcc cccagaaagg
2851 taagtctgat tcacctagcc gggtttccag gctgcggaaa gaccaagccc
2901 atccaggccc tcctcaagac tagcctgttt gcggattata aagtggcagt
2951 gcccaccgtg gagttgcgcg ccgagtggaa agctgatctg gcgcttaaaa
3001 ccggccaggc ttggagactc tccacttggg agtcatcctt gctcaagacc
3051 gcctctattc ttgtcattga tgaggtgtac aaaatgcccc gcggttatgt
3101 ggatttggcg gtagcagctg atcctaccgt ccgttttgtc attcttttgg
3151 gtgaccccct tcaaggcgag tatcacagct cccatccgga atcccagaat
3201 aagcgactct cctcggagat ccacaggctg ctcaagtaca tcgactgtta
3251 ttgcctctgg tctcaccgaa tccctcaatg cgtcgcccgc tgtttcgggg
3301 ttgagagctc aaacgagcac gaaggttacg tgggcttcag ctcctttatc
3351 gcaccccagg acattaccct cgcttgctcg cagagctcag ccaagacctt
3401 gcgcgacgcc gggtaccctg ccaccaccgt cagcagctct caaggttcca
3451 cttaccgcac cccaatcaat cttctcctcg acagaaacag tcgcagactg
3501 agcagcgccg tctcgctggt cgccgccact cgttccacca tggccataaa
3551 catgacgggc gatcgggatg ttctacaaca gggcccacac aacaacccgg
3601 tgttctctgc actttacaac gccaatctga tatccctgca cagcctgttc
3651 ccaacgcttt tcgcgaagtt gccgattata cgcaccgcga tcaccagtcg
3701 taggggcatg ctcaccggtg gcaacacctc tgctgaggac gacgttatca
3751 ttgattcaag acgtccgggc ccgttgaatg ccccagaggt cgatgatact
3801 ttcctcccga cttggcgacg ccctcttcac cggaatcttg cctctgctgt
3851 tcatagcaat tgcccggccc aatccactta cgtcactccg gccaccatca
3901 ctgcggttta tcctggtgaa tcctttgaga atctcgcagc acatttcctc
3951 cccgctcacg accccgaaat taaggagatc ttgcaccgcg gcgagttcag
4001 cgcgcagttt ccgattctcc tgaaccagga tttctctctc tccgcgcagt
4051 cttccacgtt gattgcggcc aagcatgact ccaagcgcga cccgacgctg
4101 ctcgtcgcct ccattaccaa gcgcctccgc ttccgcccga gcgactcttc
4151 gtaccagctc tcctccaagg accaaattct gggcttgacc ctctaccaca
4201 gttggtgccg agcctacaac cgccacccgc aggcagtcgt tccattcgat
4251 gagttgctgt ttgcggagtg catcaacatc aatgagttcg cgcagctctc
4301 gaacaagacc aagagcacga tcattgcgaa cgccagccga tcggaccctg
4351 attggcgcat cacagccgtt aaaattttca gcaaaacgca gcacaaaatc
4401 aatgaagcct ccatctttgg atcctggaag gcttgtcaga cgctggctct
4451 catgcatgat tatgtcgttc ttttcctggg tccggtcaag aaatatcagc
4501 gcatctttga ctcccaagag cgaccagcca acgtgtatta ccatgctggc
4551 cactcccctc ttgagatgtc cgagtgggcc caaaagcacc tcaaatcagg
4601 aatctctcac accaatgact atacggcttt tgaccaaagc cagcatggcg
4651 aggcggtcgt cttcgagatg gccaagatgc gccgcttgag catccccgag
4701 agcctcatca accttcattc gtatctcaag cgcaatgttg acacccagtt
4751 tgggcctcta acgtgcatga gactcaccgg cgaaccaggc acctacgacg
4801 acaacacaga ctacaacctc gcggtcattt acagcaagta tctggtcctc
4851 gaccacccaa tcatggtgtc cggagatgac agcgtaattg gtggaaaccc
4901 aacggtgtct cggaactggc ctgccatcga gaagctgctt gctcttcgct
4951 ttaaaacaga aagcaccaaa catcccctgt tctgcggata ctatgtagga
5001 ccagccggcg ccatcaggtc tccaatcacc cttttcgcaa agatcatgag
5051 tgccgttgac gatctctcga tagacgacaa attggcaagt tatctgtctg
5101 agttcgcgat cgggcactct ctcgggcacg acttttggga tcttctgcca
5151 attgatcaag tcccttacca atccgcggtg tatgatttct tctgccggca
5201 tgcctcgcgc gaacagaagc agatcctcaa catcggcgaa gtgcctgaca
5251 cagttctatc aagtatagct agtcatctca ggttcgccag ccgagccctg
5301 tattgtctct tgccgtcctc agttcgccgg gctctcacat ccaagaagac
5351 tgtcaccgat gcgtttgaag atcctgatgt ctcgcacatg cagggtgaat
5401 tgcttcagaa cttccaagaa tctaacataa ccaagttacg aggcgcagac
5451 atgtcagacc aagtcgtcaa acagctcgaa tccaaccacg tcgactccac
5501 tccatctctc atcccacgcc cccctttcca aggcggcagt cgcacagtgc
5551 ctttccagac tgtcgcaatg gacgtcgtcg ctgccggcgg caatgcaact
5601 ttcaacttag cgggccacgt ctcgctttct gagatcactg caccgtaccg
5651 caaggcgcgt ctggcggaac tcaaagccat cgtctgcccc accgccgcgt
5701 ccttccaatc cccgatcact cttgacctcg tctggagcac cagcaatgtc
5751 atattcaccg acctccagat acttcaggtc tacgggggca cccgctttgc
5801 tatcggcggg cccctcctca gccacacgta tgagctccgc gctgacctca
5851 gctacctcaa tcctgtcatc aaggactccg tctcatacgt ggacaccccg
5901 aagctcactc tcaacgcctc tgacccaact gggtctggct caaccgccac
5951 caccgtcgcc accgtgctgg tgagcggcaa gctgatcgtc tccgacgcat
6001 tggccacacc cacacccctc gagtaggtcc cttattcagc aatgttttgg
6051 gtagtggagc cccctagcct ccaccttttc ctttcctctg gcaatagcgc
6101 ctaaat