Sequence of DPV Papaya ringspot virus
Papaya ringspot virus gene for polyprotein, partial cds, isolate: JTK5.
ACC No: AB583218
Dated: 2012-12-12 | Length: 1416 | CRC: -687083214
ID AB583218; SV 1; linear; genomic RNA; STD; VRL; 1416 BP.
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AC AB583218;
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DT 12-DEC-2012 (Rel. 115, Created)
DT 12-DEC-2012 (Rel. 115, Last updated, Version 1)
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DE Papaya ringspot virus gene for polyprotein, partial cds, isolate: JTK5.
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KW .
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OS Papaya ringspot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1416
RA Kim O., Natsuaki K.T.;
RT ;
RL Submitted (25-AUG-2010) to the INSDC.
RL Contact:Ok-Kyung Kim Tokyo University of Agriculture, Department of
RL International Agricultural Development, Graduate School of Agriculture;
RL Sakuragaoka 1-1-1, Setagaya, Tokyo 156-8502, Japan
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RN [2]
RA Kim O., Natsuaki K.T.;
RT "A viral disease report on Trichosanthes cucumeroides in Japan, as a
RT reservoir host of cucurbit-infecting viruses";
RL Unpublished.
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FH Key Location/Qualifiers
FH
FT source 1. .1416
FT /organism="Papaya ringspot virus"
FT /segment="3"
FT /host="Trichosanthes cucumeroides M."
FT /isolate="JTK5"
FT /mol_type="genomic RNA"
FT /country="Japan:Tokyo, Komae"
FT /collection_date="Aug-2008"
FT /db_xref="taxon:12205"
FT CDS <1. .1210
FT /codon_start=2
FT /transl_table=1
FT /product="polyprotein"
FT /protein_id="BAM72041.1"
FT /translation="KSKLPEHRLEAITAAMIESWGYGELTHQIRRFYQWVLEQAPFNEL
FT AKQGRAPYVSEVGLKRLYTSERGSMDELEAYIDKYFERERGDSPELLVYHESRNTDDCQ
FT FVRDSNTHVFHQSKNETVDSGLNAKPKDKEKQQEEKNKQKEKDNDGASDGNDVSTSTKT
FT GERDRDVNAGTSGTFTVPRIKSFTDKMILPRIKGKTVLNLNHLLQYNPQQIDISNTRAT
FT QSQFEKWYEGVRNDYGLNDNEMQVMLNGLMVWCIENGTSPDTSGVWVMMDGETQVDYPI
FT KPLIEHATPSFRQIMAHFSNAAEAYIAKRNATERYMPRYGIKRNLTDISLARYAFDFYE
FT VNSKTPDRAREAHMQMKAAALRNTSRRMFGMDGSVSNKEENTERHTVEDVNRDMHSLLG
FT MRN"
FT mat_peptide <1. .349
FT /gene="NIb"
FT /product="nuclear inclusion b"
FT mat_peptide 350. .1207
FT /gene="CP"
FT /product="capsid protein"
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SQ Sequence 1416 BP; 445 A; 268 C; 351 G; 352 T; 0 other;
ab583218 Length: 1416 12-DEC-2012 Type: N Check: 8706 ..
1 caaatctaag cttccagaac atcgattgga agctattaca gcagcgatga
51 tagagtcatg gggatacggg gagttaacgc accagatccg caggttttat
101 caatgggtgc ttgagcaggc tccgttcaat gagttagcga agcagggcag
151 ggctccgtat gtatctgaag ttggattgaa gcgtttatac actagtgagc
201 gtgggtcaat ggatgaatta gaagcataca tagataaata ttttgagcga
251 gaaaggggag attcacctga gctactggtg tatcatgaat cgagaaacac
301 tgatgattgt cagtttgtcc gcgacagtaa tacacatgtg tttcaccagt
351 ccaagaatga aactgtggat tccggtctaa atgcgaagcc caaagataaa
401 gaaaaacaac aagaagaaaa aaataaacaa aaagaaaaag acaatgatgg
451 agctagtgac ggaaacgatg tgtcaactag cacaaaaact ggagagagag
501 atagagatgt caatgccgga actagtggaa ctttcactgt tccgaggata
551 aagtcattta ctgataagat gattttacca agaattaagg gaaaaactgt
601 ccttaattta aatcatcttc ttcagtataa tccgcaacaa attgacatct
651 caaacactcg tgccactcaa tctcaattcg aaaagtggta tgagggagtg
701 aggaatgatt atggtcttaa tgataacgaa atgcaggtga tgttaaatgg
751 tctgatggtt tggtgtatcg aaaatggtac atctccagac acatctggtg
801 tctgggtaat gatggatggg gaaacccaag tcgattatcc catcaaacct
851 ttaattgaac atgcaactcc ttcattcagg caaatcatgg ctcacttcag
901 taacgcggca gaggcataca tcgcgaagag gaatgcaact gagaggtaca
951 tgccgcggta tggaatcaag aggaatttga ctgacattag tctcgccaga
1001 tatgctttcg atttctatga ggtgaattca aaaacacctg atagagctcg
1051 tgaagctcat atgcagatga aggctgcagc gctacgcaat actagtcgca
1101 gaatgtttgg gatggacggc agtgtcagta acaaggaaga aaacacggag
1151 agacacacag tggaagatgt caacagagac atgcactctc tcctgggtat
1201 gcgcaattga atactcgcgc tagtgtgttc gtcgggcctg gctcgaccct
1251 gtttcacctt ataatactat ataagcatta gaatacagtg tggccgcgcc
1301 accgcttcta ttttacagtg agggtagccc tccgtgcttt tagtgttatt
1351 cgagttctct gagtctccat acagtgtggg tggcccacgt gctattcgag
1401 cctcttggaa tgagag