Sequence of DPV Pepper vein yellows virus
Pepper vein yellows virus genomic RNA, complete genome.
ACC No: AB594828
Dated: 2011-04-12 | Length: 6244 | CRC: 1646194558
ID AB594828; SV 1; linear; genomic RNA; STD; VRL; 6244 BP.
XX
AC AB594828;
XX
DT 03-FEB-2011 (Rel. 107, Created)
DT 12-APR-2011 (Rel. 108, Last updated, Version 2)
XX
DE Pepper vein yellows virus genomic RNA, complete genome.
XX
KW .
XX
OS Pepper vein yellows virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
XX
RN [1]
RP 1-6244
RA Murakami R., Nakashima N.;
RT ;
RL Submitted (18-OCT-2010) to the EMBL/GenBank/DDBJ databases.
RL Contact:Ritsuko Murakami National Institute of Agrobiological Sciences,
RL Insect Genetics and Evolution Department; Ohwashi 1-2, Tsukuba, Ibaraki
RL 305-8634, Japan
XX
RN [2]
RC Publication Status: Available-Online prior to print
RA Murakami R., Nakashima N., Hinomoto N., Kawano S., Toyosato T.;
RT "The genome sequence of pepper vein yellows virus (family Luteoviridae,
RT genus Polerovirus)";
RL Arch. Virol. 0:0-0(2011).
XX
RN [3]
RA Yonaha T., Toyosato T., Kawano S., Osaki T.;
RT "Pepper vein yellows virus, a nobel luteovirus from bell pepper plants in
RT Japan";
RL Nippon Shokubutsu Byori Gakkaiho 61:178-184(1995).
XX
FH Key Location/Qualifiers
FH
FT source 1. .6244
FT /organism="Pepper vein yellows virus"
FT /host="Capsicum annuum L. Var. grossum Sendt."
FT /mol_type="genomic RNA"
FT /country="Japan:Okinawa"
FT /isolation_source="leaves of bell pepper"
FT /collection_date="Jan-2009"
FT /db_xref="taxon:909827"
FT CDS 52. .801
FT /codon_start=1
FT /transl_table=1
FT /gene="ORF0"
FT /product="putative P0 protein"
FT /protein_id="BAJ72194.1"
FT /translation="MNFELINGSHLKVSLTRKLGYRERILNLAVFLSQFLITVQENATT
FT SHFLRSICALLPFLLSSKCPFISGNTPHRNAKREQKRVSRLAIYCGVNVTPCCRGKVSS
FT STWLQTDDNLGAPRAHLKRCAGSAMASYIQRFQTPLFQGAEGFSRFLRVWTHHCESVVE
FT GSISKLPVDRDLIVELWHLGHCLLDLLSSDDIYHARRLSRVAFRLHRIYGDGIAMDVYR
FT LAHLPRFIGFKNGEDYLHGSQIQKELQ"
FT CDS join(176. .1621,1621. .3432)
FT /codon_start=1
FT /transl_table=1
FT /ribosomal_slippage
FT /gene="ORF1-ORF2"
FT /product="putative P1-P2 fusion protein"
FT /protein_id="BAJ72195.1"
FT /translation="MQPQVIFFALFVLSSLSFSAANVPLFQGIPRTGTPSGNKSEFQGL
FT PFTVGSMSLPVVEERFLPPPGSKPMTISEPHEPTSRDALDLLWQVISRDSRRLFSKAQK
FT DFQDSCAYGLTTVKAWLRGAFQSFLWTVISLWSFGIWVIVSWTFYLVTTFTMPVVCLAL
FT LFACTEFMVMALRWMFTGWPTCLASLVLKTGKTIFTVPRFRRNYSEEKQVKGFISLKIP
FT QSPPRGSVLLVQHEDNSHAGYASCVRLYDGTLALMTCHHVGTGVPGGKVTSTKTPNKIP
FT LRLFTPLISSEKGDFMLMSGPPNWESLLGCKGAHFVSASQLAKSKMRFFFIEKDEWMAD
FT HGEIVGPRDHWFATTLCNSEPGHSGTPIFNGKTIVGVHAGGENGQNFNVMATIPPVPGL
FT TTPRYVFETTAPQGRVFTDEDLSEMMKSVTSYPQLEKFKSHTGKNWADDEDFETEVKSK
FT PAPAPVAQEAKPMSSAEEAPPVSKIPAVVPTFSRVGKRERQSCLPNQQQSCPRTREGQG
FT EEGRGRKGPRIAHPLKASRISRRRRKIFREAFGEASGENRPCHYREESGGSGGSESHEE
FT APGKPAAQTTAENFQRYFEGSYKWEVPASPQEIPGFQRCGSLPQYYHPKQIKSSDWGTQ
FT LIQEHLELGEKVSGFGWPTVGPKAEVTSLTLQAERWLQRAQSAKTPSSEDRERVINKTV
FT EASSNVKTFGPTATRGNKLEWRQFLEDFKSAVLSLELDAGIGVPYIAYGRPTHKGWVED
FT PKLLPVLARLTFNRLQKMLEVESSDMSAEELVQAGLCDPIRTFVKREPHKQSKLDEGRY
FT RLIMSVSLVDQLVARVLFQNQNKREIALWRANPSKPGFGLSTDEQVLEFVQALAAQVEV
FT SPEEMITSWEKYLVPTDCSGFDWSVAEWMLHDDMVVRNKLTLDLNPTTEKLRSAWLKCI
FT CNSVLCLSDGTLLAQRVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDALESV
FT NTNLEVYKSLGFKVEVSGQLEFCSHIFRAPDLALPVNERKMLYKLIFGYNPGSGNLEVV
FT ANYIAACVSVLNELRHDPDLVALLHSWLVSPVLPQNN"
FT CDS 176. .2140
FT /codon_start=1
FT /transl_table=1
FT /gene="ORF1"
FT /product="putative P1 protein"
FT /protein_id="BAJ72196.1"
FT /translation="MQPQVIFFALFVLSSLSFSAANVPLFQGIPRTGTPSGNKSEFQGL
FT PFTVGSMSLPVVEERFLPPPGSKPMTISEPHEPTSRDALDLLWQVISRDSRRLFSKAQK
FT DFQDSCAYGLTTVKAWLRGAFQSFLWTVISLWSFGIWVIVSWTFYLVTTFTMPVVCLAL
FT LFACTEFMVMALRWMFTGWPTCLASLVLKTGKTIFTVPRFRRNYSEEKQVKGFISLKIP
FT QSPPRGSVLLVQHEDNSHAGYASCVRLYDGTLALMTCHHVGTGVPGGKVTSTKTPNKIP
FT LRLFTPLISSEKGDFMLMSGPPNWESLLGCKGAHFVSASQLAKSKMRFFFIEKDEWMAD
FT HGEIVGPRDHWFATTLCNSEPGHSGTPIFNGKTIVGVHAGGENGQNFNVMATIPPVPGL
FT TTPRYVFETTAPQGRVFTDEDLSEMMKSVTSYPQLEKFKSHTGKNWADDEDFETEVKSK
FT PAPAPVAQEAKPMSSAEEAPPVSKSRQWYPRFPESGNEKGRAACQTNSNPAPAQEKGKE
FT KKVEAEKAPASPTPSKLPESADGGEKYLEKLLEKLVERIDLATIEKKVVEVVAQKAMKK
FT PQGSQRRRRPRRTSNDTSKEATNGRYQPPHKRSQGSNDAEASPSTTTRSKSKVVTGAPS
FT SSKSTWSWERKSPASAGQQ"
FT CDS 3632. .5842
FT /codon_start=1
FT /transl_table=1
FT /transl_except=(pos:4250. .4252,aa:OTHER)
FT /gene="ORF3-ORF5"
FT /product="putative read through protein P5"
FT /protein_id="BAJ72197.1"
FT /translation="MNTGGVRRNNNGNGGSRNTRRRRRPRQVRPVVVVAPPGRTRRGNR
FT RRRNGGRNRRSRNRVGGRSSNSETFIFNKDSIKDSSSGSVTFGPSLSESVALSGGVLKA
FT YHEYKITMVNIRFVSESSSTAEGSIAYELDPHCKLTSLQSTLRKFPVTKGGQATFRASQ
FT INGVEWHDTSEDQFRLLYRGNGTKNVAAGFFQIRFTVQLHNPKXVEGSTPPPPPPSGPE
FT PPPPPPQPEPCKKNRFWGYEGNPQSKILTAENDRNIDSRPLNFVSMYKWEDEKWDKVNL
FT QAGYSRNDRRCMETYLTIPADKGKFHVYLEADGEFVVKHIGGDLDGSWLGNIAYDVSQR
FT GWTVGNYKGCKIKNYQTNITFVAGHPEAKMNGKAFDSARAVEVDWFASFELECDDEEGS
FT WMIYPPPIQKDSSYNYTVSYGNYTEKYCEWGAISVSIDEDNEGYAPRRIPRKGEMAWSY
FT PEKDYSENKPQKENWDTEPLDTGEMQRERQLVKTPSPDVSDSGSEFGADPIPQDLIDKV
FT NRGEALDPMQQLEYDKYRFQENVIELSESQDQSSEYPKLPPPVPHKPLPLGRTEKFFRP
FT RADLLEAWDKDHFDPGYTKEEVAAATIISHGSITDGRAAIEERDNKIQRARVSWPHDKS
FT TTSPSIAKLREETSEKKALFGGSLRRGSEAASSLGGGSITGGTLKSKRTVEEGIVPKLT
FT TTQRLRYEQLKARSQTAANEYLWSVEIPPEKPPGPSTFKGRS"
FT CDS 3632. .4252
FT /codon_start=1
FT /transl_table=1
FT /gene="ORF3"
FT /product="putative P3 protein"
FT /protein_id="BAJ72198.1"
FT /translation="MNTGGVRRNNNGNGGSRNTRRRRRPRQVRPVVVVAPPGRTRRGNR
FT RRRNGGRNRRSRNRVGGRSSNSETFIFNKDSIKDSSSGSVTFGPSLSESVALSGGVLKA
FT YHEYKITMVNIRFVSESSSTAEGSIAYELDPHCKLTSLQSTLRKFPVTKGGQATFRASQ
FT INGVEWHDTSEDQFRLLYRGNGTKNVAAGFFQIRFTVQLHNPK"
FT CDS 3663. .4133
FT /codon_start=1
FT /transl_table=1
FT /gene="ORF4"
FT /product="putative P4 protein"
FT /protein_id="BAJ72199.1"
FT /translation="MEMVDHVTPAVVDAHDRFALSLWSHPLGAHGEEIEDDEMEAGTEE
FT AEIELEEGRATAKLSSSTRTQSRIVPQDLSPSGRLYQRASRFQVEFSKPTMNIRSQWST
FT YASSVNLLPQRRAPSLTSWTPTASLLVSNPPCVSSPSPKAGKRLFGLRRLTG"
XX
SQ Sequence 6244 BP; 1731 A; 1537 C; 1551 G; 1425 T; 0 other;
ab594828 Length: 6244 12-APR-2011 Type: N Check: 8244 ..
1 acaaaatata cgaagagaga gagcccttgc ttgtgatttc ttcaaagttt
51 catgaacttt gaattgatca acggaagcca tctcaaagtt tccctcactc
101 gcaagctcgg ttacagagaa agaattttga atttagcagt attcttaagt
151 caatttctca taaccgttca agaaaatgca accacaagtc attttcttcg
201 ctctatttgt gctctcctcc ctttccttct cagcagcaaa tgtcccttta
251 tttcagggaa taccccgcac cggaacgcca agcgggaaca aaagcgagtt
301 tcaaggcttg ccatttactg tggggtcaat gtcactccct gttgtagagg
351 aaaggtttct tcctccacct ggctccaaac cgatgacaat ctcggagccc
401 cacgagccca cctcaagaga tgcgctggat ctgctatggc aagttatatc
451 cagagattcc agacgcctct tttccaaggc gcagaaggat tttcaagatt
501 cttgcgcgta tggactcacc actgtgaaag cgtggttgag gggagcattt
551 caaagcttcc tgtggaccgt gatctcattg tggagctttg gcatttgggt
601 cattgtctcc tggaccttct atctagtgac gacatttacc atgcccgtcg
651 tttgtctcgc gttgcttttc gcctgcacag aatttatggt gatggcattg
701 cgatggatgt ttaccggctg gcccacttgc ctcgcttcat tggttttaaa
751 aacggggaag actatcttca cggttcccag attcagaagg aactacagtg
801 aagagaaaca agttaagggg tttatttctt tgaaaatccc ccagagcccc
851 ccccgtggaa gcgtgctact cgtgcaacat gaagacaact ctcacgccgg
901 gtatgccagc tgcgtacggt tatatgacgg cactttagct ctcatgacct
951 gtcaccacgt gggcacaggg gttcccggag gaaaggtgac ctccacgaaa
1001 acacctaaca agataccact ccgcctattc acacctctga tctcttcaga
1051 aaaaggagat ttcatgttaa tgagcgggcc cccaaactgg gagagcctgt
1101 taggctgtaa aggagctcac ttcgtctccg catcacaact tgctaaatct
1151 aagatgcggt tcttcttcat tgaaaaagac gagtggatgg ctgatcacgg
1201 tgagattgtc ggtccacgtg atcactggtt tgctacaacg ctctgcaact
1251 cagagcctgg acactctggc accccgatct tcaatggcaa aaccatagtg
1301 ggtgtgcacg ctggaggtga gaatggacag aacttcaatg tgatggcaac
1351 gatccctccc gtccccggtt tgacgacccc tcggtacgtc ttcgagacaa
1401 ctgcccctca gggtcgagtc ttcactgatg aggacttaag tgagatgatg
1451 aagagcgtca cctcatatcc ccagttggaa aaatttaaaa gccatactgg
1501 gaagaactgg gcagatgatg aagacttcga aactgaagtc aagagcaaac
1551 ccgccccggc acccgtagct caagaagcca aacccatgag cagtgccgag
1601 gaagctccgc cggtgagtaa atcccggcag tggtacccac gttttcccga
1651 gtcgggaaac gagaaaggca gagctgcctg ccaaaccaac agcaatcctg
1701 cccccgcaca agagaagggc aaggagaaga aggtagaggc cgaaaaggcc
1751 cccgcatcgc ccaccccctc aaagcttcca gaatcagccg acggcggcga
1801 aaaatattta gagaagcttt tggagaagct agtggagaga atcgaccttg
1851 ccactataga gaagaaagtg gtggaagtgg tggctcagaa agccatgaag
1901 aagccccagg gaagccagcg gcgcagacga ccgcggagaa cttccaacga
1951 tacttcgaag gaagctacaa atgggaggta ccagcctccc cacaagagat
2001 cccagggttc caacgatgcg gaagcctccc ccagtactac cacccgaagc
2051 aaatcaaaag tagtgactgg ggcacccagc tcatccaaga gcacctggag
2101 ctgggagaga aagtctccgg cttcggctgg ccaacagtag gccccaaagc
2151 cgaggtgacc tctctcactt tacaagcaga gaggtggctg caacgcgcgc
2201 agtcagctaa aaccccgtca tctgaggacc gggagcgcgt cataaataaa
2251 actgtggagg cctcctcgaa tgttaagact tttggcccca cagctactag
2301 agggaacaag ctcgagtggc ggcaatttct ggaagatttt aagtcagccg
2351 tcctctcttt ggagcttgat gcaggtatag gcgtgccata catcgcctat
2401 ggaagaccca ctcataaagg ttgggtggaa gacccgaaac tcctgccagt
2451 gctcgcccga ctcactttca accgtttaca gaagatgttg gaagtcgagt
2501 cttctgatat gagcgctgaa gagcttgttc aagctggtct ctgtgatcct
2551 ataaggactt ttgtgaagag agaaccgcac aagcaatcta aactcgatga
2601 aggacgctac cgcctcatca tgagtgtttc cctagtagat caattggtag
2651 cccgggttct gttccaaaac cagaacaagc gagaaatcgc tctttggagg
2701 gcaaatccct caaaacccgg ttttggctta tctacggatg agcaagtgct
2751 ggagtttgta caggctctgg ccgcacaagt ggaagtctca ccagaagaaa
2801 tgattacctc gtgggagaag taccttgtgc caactgattg ctccggcttt
2851 gactggagcg ttgcggaatg gatgctacat gacgatatgg tcgtccgcaa
2901 taaactcaca ctggacttaa atcctacaac ggagaagtta cgatctgcgt
2951 ggctaaaatg catctgcaat agtgtcctgt gtttgagcga tggcactctc
3001 ctcgcccaaa gggtccccgg cgttcagaag tctggtagct acaacacaag
3051 tagttcaaat tcaaggatcc gagttatggc cgcctaccac tgtggggctg
3101 actgggccat ggcgatggga gatgatgccc ttgaatcagt caacaccaac
3151 ctagaggtgt ataaaagtct aggtttcaaa gtcgaggttt caggacaact
3201 ggaattctgc tctcacattt ttagagcgcc tgacctcgcc cttcccgtga
3251 atgagcgcaa aatgctgtat aagctcatct tcggatacaa tccgggaagt
3301 gggaatctgg aagtagtcgc gaactacatt gccgcctgcg tatcagttct
3351 gaatgaactg cggcatgacc cagatttagt tgctctcctt cactcgtggc
3401 tagtctctcc agtgctgcca caaaataatt gaagagagag ccgataacta
3451 gccaagcata catcagttgc aagcgttgga aagttttagt ctgattacca
3501 acagcctgac ataatagatt ataaattttt agcaggattt gcgtttggat
3551 tcttatccgc aatcccaatt tctgtagcag gcatatacct agtctacctt
3601 aagatctcag cccacgttcg cgcaatcgtt aatgaatacg ggaggggtta
3651 ggagaaataa taatggaaat ggtggatcac gtaacacccg ccgtcgtaga
3701 cgcccacgac aggttcgccc tgtcgttgtg gtcgcacccc ctgggcgcac
3751 acggcgagga aatcgaagac gacgaaatgg aggcaggaac cgaagaagcc
3801 gaaatagagt tggaggaagg tcgagcaaca gcgaaacttt catcttcaac
3851 aaggactcaa tcaaggatag ttcctcagga tctgtcacct tcgggccgtc
3901 tctatcagag agcgtcgcgc tttcaggtgg agttctcaaa gcctaccatg
3951 aatataagat cacaatggtc aacatacgct tcgtcagtga atcttcttcc
4001 acagcggagg gctccatcgc ttacgagctg gacccccact gcaagcttac
4051 tagtctccaa tccaccctgc gtaagttccc cgtcaccaaa ggcgggcaag
4101 cgacttttcg ggcttcgcag attaacgggg tagagtggca tgatacatcc
4151 gaagatcaat ttaggctgct ctacagaggc aatgggacga agaacgttgc
4201 cgccggtttc ttccagatcc ggtttactgt gcaattgcac aacccgaaat
4251 aggtagaagg tagtaccccc cccccccccc ccccttcagg tcctgagcca
4301 cccccaccac ccccacagcc agaaccgtgc aagaagaacc ggttttgggg
4351 ttatgaagga aatcctcaga gcaagatctt gacggcggag aatgatagaa
4401 atatcgactc ccgccccttg aattttgtct ctatgtataa gtgggaagat
4451 gagaagtggg ataaagtcaa tctccaggct ggttattcaa gaaacgatcg
4501 gcgatgcatg gagacatacc tgaccattcc agcagacaaa ggaaaattcc
4551 atgtctatct tgaagctgat ggcgagtttg tagtcaagca tattggcggc
4601 gatctcgatg gtagttggct cggcaatatt gcctatgatg tctcgcaaag
4651 aggctggact gtgggaaatt acaaagggtg taaaataaag aattatcaga
4701 cgaatatcac ctttgtagcg gggcacccgg aggctaaaat gaatggcaaa
4751 gcttttgaca gcgcccgggc agttgaagtt gattggttcg cttcctttga
4801 acttgagtgt gatgatgaag aaggaagctg gatgatttat cccccgccga
4851 tccagaagga ttcctcctat aactacaccg tgtcatacgg gaattatacg
4901 gagaagtatt gtgaatgggg agccatatcc gtctctatag acgaagacaa
4951 cgaggggtac gcaccaagaa gaattccgcg caagggggaa atggcgtggt
5001 cttatccgga gaaagattac tccgaaaaca aaccccagaa ggaaaactgg
5051 gatactgaac ccctggacac aggtgaaatg cagcgagaaa gacaactcgt
5101 taaaactcca tctccggatg tctctgattc tggttcagag tttggggcag
5151 atccaatacc tcaggatctg atcgataagg ttaatagggg agaagcacta
5201 gatcctatgc aacaacttga atacgacaag tataggtttc aggaaaatgt
5251 tatcgagctc agtgagtcac aagaccaatc ttctgagtac cccaagcttc
5301 ccccccccgt cccacacaag ccgcttcccc tgggtaggac tgaaaagttt
5351 ttcaggccta gagctgatct tttagaagcc tgggataagg atcacttcga
5401 ccctggttat actaaggaag aagtggccgc ggctacaata atctctcacg
5451 gttctataac tgatgggaga gcagctattg aagaaagaga taacaagatc
5501 caacgggccc gagtttcgtg gcctcatgat aagtcaacga caagtccttc
5551 aatagccaaa ttgagagaag agacctctga aaagaaagct ttatttggcg
5601 ggtctctgag acggggttct gaagctgcct cctctctagg gggtggttct
5651 ataactggtg gcactttaaa gtctaagagg acagttgagg aaggaatagt
5701 acctaaactc acgactactc aaaggcttag gtatgagcaa cttaaagctc
5751 ggagccaaac ggccgcaaac gaatatttgt ggtcagttga aattcctccc
5801 gagaaaccac caggcccttc cacattcaaa gggcggtcct agctctggga
5851 ccttaaattc tgtgagcata atttgtagtc caagctctat gactataaag
5901 aaacgagcac actgaactcc aagcctgtta gagtataacc caggcagtct
5951 aagctctatg actttaaaat aacgagcata ctgaactcca agcctgttag
6001 agtataaccc aggcagtcta agctctatga ctttaaaata acgagcgtac
6051 tgaactccaa gcctgttaga gtataaccca ggtcgtcatt agctgtagac
6101 gtaaaatcag cggtccagtg ttgaaggctg taaaacactg agtaactcac
6151 agcaacgaaa cccgcagaca gatctgtgtg gaagtaggca tcataattct
6201 tagggtaggg gggtgtatag ataccccccc ctggtctatg atgt