Sequence of DPV Rice stripe virus

Rice stripe virus gene for nucleocapsid protein, complete cds, isolate: CN-JSCX08.

ACC No: AB622862

Dated: 2011-04-20 | Length: 969 | CRC: 1520626778

                
ID   AB622862; SV 1; linear; genomic RNA; STD; VRL; 969 BP.
XX
AC   AB622862;
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DT   03-APR-2011 (Rel. 108, Created)
DT   20-APR-2011 (Rel. 108, Last updated, Version 3)
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DE   Rice stripe virus gene for nucleocapsid protein, complete cds, isolate:
DE   CN-JSCX08.
XX
KW   .
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OS   Rice stripe virus
OC   Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN   [1]
RP   1-969
RA   Onuki M., Sakai J., Otuka A., Sanada-Morimura S., Zhou Y., Matsumura M.;
RT   ;
RL   Submitted (31-MAR-2011) to the EMBL/GenBank/DDBJ databases.
RL   Contact:Masatoshi Onuki National Agricultural Research Center for Kyushu
RL   Okinawa Region; 2421, Suya, Koshi, Kumamoto 861-1192, Japan E-mail
RL   :onukim@affrc.go.jp
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RN   [2]
RA   Sakai J., Onuki M., Otuka A., Sanada-Morimura S., Zhou Y., Matsumura M.;
RT   "Molecular relationships between Rice stripe virus isolates collected in
RT   Kyushu district and those collected in eastern China.";
RL   Unpublished.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .969
FT                   /organism="Rice stripe virus"
FT                   /segment="3"
FT                   /host="Laodelphax striatellus"
FT                   /isolate="CN-JSCX08"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Jiangsu, Gaochun, Chunxi"
FT                   /collection_date="Oct-2008"
FT                   /db_xref="taxon:12331"
FT   CDS             complement(1. .969)
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /product="nucleocapsid protein"
FT                   /protein_id="BAK14414.1"
FT                   /translation="MGTNKPATLADLQKAINDISKDALSYLTAHKADVVTFAGQIEYAG
FT                   YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR
FT                   YGIVSSVGTNANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV
FT                   PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT
FT                   TGLLVITCKSKNLADKKKEDGRKKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTR
FT                   LYLAQQSKLMKILAENTSKTASEVSGLVKEFFEDEAEGADD"
XX
SQ   Sequence 969 BP; 228 A; 250 C; 197 G; 294 T; 0 other;

ab622862 Length: 969  20-APR-2011  Type: N  Check: 9890  ..

       1  ctagtcatct gcaccttctg cctcatcctc gaagaactcc ttcaccaatc
      51  cgctgacttc agatgctgtc tttgaagtgt tctcagcaag gatcttcatt
     101  agcttgctct gttgagccaa gtacagcctt gtctgattcc cataagtgct
     151  gatcgtattg acagacatac cagccagcgc atcgaagatt gtggtcttca
     201  ctttcccatt ggtgatgaat tcatctaaga ccttctttct gccatcttcc
     251  ttcttcttgt cagccaggtt ctttgacttg catgtgatga ccaggagacc
     301  agttgtgtac ttcatcatgt ctatgtcttt tgtcagacca cgctccttct
     351  tcttgccctc tggcatggtc tttttggtta tctggaagga gtgaatgatg
     401  tgcacaacaa acaaaatgtg acttagggag tgagttgtgc agtaaggagc
     451  tgtttcactc tccagtttga tatattgtgg aacatagtcc cacagtaagt
     501  tgtcacatcc tgttagtccc aggtcagaag aatccacagc catcttaaca
     551  ccagaaattt gtctcacaac ttcatgtgag acatttggga atagctgagc
     601  cagccttcca agtgtgatag cattggcatt tgttcccacc gaggacacta
     651  tcccatacct cgacaccaag gtcgaagcct ctgtgcttcc agctgccact
     701  ttcactttct tagtgacatc tctcacaaag ccagtgcctc tcacatatct
     751  catggtgatg cacatagtca tatccttggc cagtgtgtcg ccacctttgt
     801  ccttcaatat gccaatcaga gttgcagcat catagcctgc atactctatc
     851  tgaccagcaa aggtcacaac atcagcttta tgagcagtca ggtaagacaa
     901  cgcatctttg gagatgtcat tgattgcctt ctgcaaatca gctagagtgg
     951  ctggcttgtt ggtgcccat