Sequence of DPV Rice stripe virus

Rice stripe virus gene for non-capsid protein, complete cds, isolate: JP-R-NSHO08.

ACC No: AB625338

Dated: 2011-04-14 | Length: 537 | CRC: -745318662

                
ID   AB625338; SV 1; linear; viral cRNA; STD; VRL; 537 BP.
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AC   AB625338;
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DT   14-APR-2011 (Rel. 108, Created)
DT   14-APR-2011 (Rel. 108, Last updated, Version 1)
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DE   Rice stripe virus gene for non-capsid protein, complete cds, isolate:
DE   JP-R-NSHO08.
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KW   .
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OS   Rice stripe virus
OC   Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN   [1]
RP   1-537
RA   Onuki M., Sakai J., Otuka A., Sanada-Morimura S., Zhou Y., Matsumura M.;
RT   ;
RL   Submitted (11-APR-2011) to the EMBL/GenBank/DDBJ databases.
RL   Contact:Masatoshi Onuki National Agricultural Research Center for Kyushu
RL   Okinawa Region; 2421, Suya, Koshi, Kumamoto 861-1192, Japan E-mail
RL   :onukim@affrc.go.jp
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RN   [2]
RA   Sakai J., Onuki M., Otuka A., Sanada-Morimura S., Zhou Y., Matsumura M.;
RT   "Molecular relationships between Rice stripe virus isolates collected in
RT   Kyushu district and those collected in eastern China.";
RL   Unpublished.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .537
FT                   /organism="Rice stripe virus"
FT                   /segment="4"
FT                   /host="Oryza sativa"
FT                   /isolate="JP-R-NSHO08"
FT                   /mol_type="viral cRNA"
FT                   /country="Japan:Nagasaki, Sasebo, Hario"
FT                   /collection_date="Aug-2008"
FT                   /db_xref="taxon:12331"
FT   CDS             1. .537
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /product="non-capsid protein"
FT                   /protein_id="BAK18918.1"
FT                   /translation="MQDVQRTVEVSVGPIVGLDYTLLYDTLPEAVSDNITLPDLKDPER
FT                   VTEDTKKLILKGCVYIAYHHPLETDTLFIKVHKHIPEFCHSFLSHLLGGEDDDNALIDI
FT                   GLFFNMLQPSLGGWITKNFLRHPNRMSKDQIKLLLDQIIKMAKAESSDTEEYEKVWKKM
FT                   PTYFESIIQPLLHKT"
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SQ   Sequence 537 BP; 170 A; 111 C; 106 G; 150 T; 0 other;

ab625338 Length: 537  14-APR-2011  Type: N  Check: 3584  ..

       1  atgcaagacg tacaaaggac agtagaagtt tctgttggtc ctattgtagg
      51  cctagattac actctattgt atgacactct gcccgaggct gttagcgata
     101  acattactct acctgatttg aaagatccag agagagtcac ggaagatact
     151  aagaagctaa tactcaaagg ctgtgtttac atagcatatc atcacccctt
     201  agagactgac acccttttca tcaaagttca caaacatata ccagagtttt
     251  gtcactcatt cctatcacac cttttaggag gtgaagatga tgacaatgct
     301  ctcatagaca ttggtctgtt tttcaacatg ttgcaaccct ctttgggcgg
     351  ttggataacc aagaattttc ttagacaccc taataggatg tctaaggacc
     401  agattaaatt gctcctggat cagattatca agatggctaa ggctgagagc
     451  tcagacacag aagagtatga gaaagtgtgg aagaagatgc caacttattt
     501  tgaatcaatt atccaacctc ttctacacaa gacatag