Sequence of DPV Luka virus
Lunk virus NKS-1 RNA, segment S, complete sequence.
ACC No: AB693150
Dated: 2012-10-07 | Length: 3419 | CRC: 1816889199
ID AB693150; SV 1; linear; genomic RNA; STD; VRL; 3419 BP.
XX
AC AB693150;
XX
DT 30-SEP-2012 (Rel. 114, Created)
DT 07-OCT-2012 (Rel. 114, Last updated, Version 2)
XX
DE Lunk virus NKS-1 RNA, segment S, complete sequence.
XX
KW .
XX
OS Lunk virus NKS-1
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC Old world arenaviruses; unclassified Old world arenaviruses.
XX
RN [1]
RP 1-3419
RA Ishii A., Sawa H.;
RT ;
RL Submitted (18-JAN-2012) to the INSDC.
RL Contact:Akihiro Ishii Research Center for Zoonosis Control, Hokkaido
RL University; kita-ku, N20, W10, Sapporo, Hokkaido 0010020, Japan
XX
RN [2]
RX DOI; 10.1099/vir.0.044099-0.
RX PUBMED; 22815269.
RA Ishii A., Thomas Y., Moonga L., Nakamura I., Ohnuma A., Hang'ombe B.M.,
RA Takada A., Mweene A.S., Sawa H.;
RT "Molecular surveillance and phylogenetic analysis of Old World arenaviruses
RT in Zambia";
RL J. Gen. Virol. 93(Pt 10):2247-2251(2012).
XX
FH Key Location/Qualifiers
FH
FT source 1. .3419
FT /organism="Lunk virus NKS-1"
FT /segment="S"
FT /host="Mus minutoides"
FT /strain="NKS-1"
FT /mol_type="genomic RNA"
FT /country="Zambia:Lusaka"
FT /isolation_source="kidney of rodent specimen: CZC 10LR34"
FT /collection_date="10-Aug-2010"
FT /db_xref="taxon:1134579"
FT CDS 98. .1585
FT /codon_start=1
FT /transl_table=1
FT /gene="GP"
FT /product="Glycoprotein precursor"
FT /protein_id="BAM45328.1"
FT /translation="MGQIVTLFESLPHIIDEVINIVIMVLILITAIKAVYNLCTCGLFA
FT LIMFLFMAGRSCSLEGPGMYKGTYQFKSVELNMSQFNQTLPNACSVNNSHHYIGMGDSG
FT LELTFTNDSIIDHNQCNLTDYFKKSHFDHVLSSIITHLHLSVRGHSYYKAVSCDFNNGI
FT TIQYNLSINTPQKAVDNCRSFRGRVLDMFRTAFGGKHMRAGFGMTDANGKATWCSQTDY
FT NYLIIQNRTWDNHCEYANPMGFARLLFAQEKTKFLTRRLMGTFTWTLSDSSGVESSSGY
FT CLTRWMIIAADLKCFGNTAVAKCNLNHDEEFCDMLKLIDYNKAALTKFKKDVESALHLF
FT KVTMNSLISDTLLMRNHLRDLMGIPYCNYSKFWYLEHYKTGETSLPKCWLVSNGSYLNE
FT THFSDEIEQEANNMITEMLRKDYYKRQGSTPLALMDILMFSTSAYLISVFLHLLRIPTH
FT RHVKGGTCPKPHRLNSKGICSCGAFKVPGVKVIWKRN"
FT CDS complement(1654. .3330)
FT /codon_start=1
FT /transl_table=1
FT /gene="NP"
FT /product="nucleoprotein"
FT /protein_id="BAM45329.1"
FT /translation="MAQSKEVKSFQWTQCLRRELQSFTSNVKAAVIRDATNLLNGLDFA
FT EVSNVQRIMRKDKRDDKDLQRLRSLNQTVNSLVELKSSTKKNVLKIGRLTAEELMSLAA
FT DLEKLKLKVLRSERPQVSGVYLGNLTTQQLDQRSQILQMVGMSRENPRSNGVVRVWDVK
FT DSSLLNNQFGTMPSLTMACMAKQSQTPLNDVVQALTDLGLLYTVKYPNLTDLEKLREKH
FT PVLGIVTEQQSGINISGYNFSLNAAVKAGASLLDGGNMLETIQIKPNNTDDLLKAILSA
FT KKKLGMFVSEQSGDRNPYENILYKTCLSGEGWPYIACRTGITGRAWENTTIDMSGDKNR
FT NTPVRMNPGSAGPPAVGLGYSQIMLLKDLMGGIDPNAPTWVDIEGRHDDPVEIAFFQPG
FT NGQYIHFYREPVDQKQFKQDSKFSHGMDIADLLDVQPGLTSAVLGALPPGMVLSCQGSD
FT DIRKLLDSQGRKDIKLIDIEMSKDASREFEDKVWDKYGFLCKKHTGVVKDKKKKEITPH
FT CALMDCLIFESATKAKLIDLKGIHNILPHDLIYRGPNIVNL"
XX
SQ Sequence 3419 BP; 890 A; 797 C; 738 G; 994 T; 0 other;
ab693150 Length: 3419 07-OCT-2012 Type: N Check: 8227 ..
1 cgcaccgggg atcctaggca ttttggattg cgctttgttg tggtcctttg
51 ttatactcca cgattcgagg tgccaccgta ctacacagag gggaccaatg
101 gggcagattg taaccctctt tgagtcactg cctcacatta ttgatgaggt
151 gatcaacatt gtcatcatgg tcctcatttt aatcacagcc ataaaggcag
201 tctacaacct ctgcacatgt ggcttgtttg cgctgatcat gttcctgttt
251 atggcaggca gatcatgttc tctagaaggc ccaggcatgt acaagggaac
301 ctatcagttc aagagtgttg agttgaacat gtcacaattc aaccagacac
351 tccctaacgc atgttctgtg aacaacagtc accattacat cgggatgggt
401 gactcgggtt tggagctgac attcaccaat gactcaatta ttgaccacaa
451 ccagtgtaac ctgactgatt acttcaagaa gtcccacttt gatcatgtgc
501 tctctagtat cataactcat ctgcatctat cagtcagggg gcatagctac
551 tataaagctg ttagttgtga cttcaacaat ggaataacaa ttcagtacaa
601 cttgagcatc aacactcctc aaaaggctgt ggataactgc agatctttca
651 gagggagggt gttagacatg tttagaaccg cttttggagg gaagcacatg
701 agagcaggtt ttgggatgac agatgcaaat gggaaagcca cttggtgcag
751 tcaaactgat tacaactatt taatcattca aaacaggact tgggataacc
801 actgtgagta tgcaaatccc atgggattcg ccaggctcct atttgctcaa
851 gagaagacca agttcctgac aagaaggttg atggggacat tcacatggac
901 tctctcagac agctccggag tggaaagttc gtcaggttac tgtctcacaa
951 ggtggatgat aatagcagca gatttgaaat gttttgggaa cacagcagtt
1001 gccaagtgca acctaaatca tgatgaagag ttctgcgata tgcttaaatt
1051 aattgactat aacaaggcag ccttgacgaa gttcaagaaa gatgttgaat
1101 ctgctttgca cctgtttaaa gtgacaatga attccctcat atctgacacc
1151 ctcctaatga ggaatcacct tagggatctt atgggaatac cttattgcaa
1201 ctactcaaaa ttctggtatc tagaacatta caaaactggt gaaacaagtt
1251 tacctaagtg ttggctcgtg agtaatgggt cttatttaaa tgagactcat
1301 ttctcagatg agattgaaca agaagctaat aatatgatta cagaaatgtt
1351 aagaaaggac tactacaaga ggcaaggatc aactccactg gctctaatgg
1401 atatattgat gttctctaca tctgcctatc taatcagtgt cttccttcat
1451 ctattgagaa tcccgactca cagacacgta aaaggcggga catgtccaaa
1501 gccgcaccgc ctcaacagca aagggatttg ctcttgtgga gcttttaaag
1551 ttccaggtgt caaggtgatc tggaagagga actaaccctg aacggacacc
1601 cccctgacct cccacctctt tcgaggtggg aggtcagggg ggccggttgg
1651 cttctagaga ttcacgatgt ttggacctct atatatcagg tcatgtggta
1701 atatgttgtg gattcctttg agatcgatga gctttgcttt tgttgcagac
1751 tcaaaaatca gacaatccat caaagcacaa tgcggtgtga tttccttttt
1801 ctttttatcc ttgaccaccc cagtgtgctt tttgcaaaga aatccatatt
1851 tgtcccaaac tttatcttcg aactctcttg aggcatcttt tgacatttca
1901 atgtcaatta gcttgatgtc cttcctgccc tgtgagtcaa gcaatttgcg
1951 gatgtcatct gaaccctggc atgacagaac catgccaggt ggcagtgcac
2001 caaggacagc agacgtcaga cctggttgga catcaagtag gtcagcaatg
2051 tccatcccat gagaaaactt ggagtcctgt ttgaattgtt tctgatccac
2101 aggctccctg taaaagtgaa tatattgccc atttccaggt tggaagaagg
2151 caatttccac tggatcgtca tgcctaccct caatgtccac ccaggttggg
2201 gcatttggat caatcccccc catcaagtct ttcaacaaca tgatttggga
2251 gtagcctaag cccactgctg gaggccctgc agatcctggg ttcatcctca
2301 ctggtgtatt tctattcttg tctccactca tgtcaattgt tgtgttctcc
2351 catgccctcc cagtgatgcc cgttctgcag gcgatgtagg gccacccctc
2401 tcctgaaaga caggttttgt agagtatgtt ctcataagga ttcctgtctc
2451 ctgactgttc agacacaaac atcccaagct ttttcttggc tgataaaatt
2501 gccttcagca ggtcatctgt gttattaggc ttgatttgta tagtttcaag
2551 catgttgccc ccatcgagga gtgaagcacc tgccttcaca gctgcattta
2601 gactaaaatt gtatccagat atatttatcc cagactgctg ctctgtcact
2651 atccccaaca ctggatgctt ctcccttagt ttttccaggt cagtgaggtt
2701 gggatatttg actgtataaa gcaatcccag gtctgtcagt gcttgcacaa
2751 catcattgag aggtgtctgt gactgtttgg ccatgcaagc cattgtcaga
2801 gagggcatgg ttccaaactg attgttaagt aaggaggagt ctttgacatc
2851 ccacactctc actacaccat ttgatcttgg gttctctcga ctcatcccca
2901 ccatttgcaa gatttgtgat ctttgatcta gttgttgagt ggtgaggttc
2951 cccaagtaga ccccacttac ctgtggcctc tcagatctca agaccttcag
3001 cttgagtttc tccaagtcag cagcaagtga catcaactct tcggcagtga
3051 gtcttcctat cttcaaaaca ttctttttcg ttgaagattt gagctcaacc
3101 agagagttga cggtctgatt taaactgcga agcctctgta gatctttgtc
3151 gtctcttttg tccttcctca ttattctctg aacgttgctg acttctgcaa
3201 agtctaaccc attcaacaag tttgtggcat ctcggatcac agctgctttc
3251 acatttgaag tgaaactctg gagctctctc ctgaggcatt gagtccactg
3301 gaagctcttc acttccttgg attgtgccat cttcagcaag ccaactatga
3351 gctaatcttt ctcccacaaa gtaggtcaaa gaaactgcgc tctaattcgc
3401 ctaggatcca ctgtgcgcg