Sequence of DPV Lymphocytic choriomeningitis virus
Lymphocytic choriomeningitis virus Z protein and L protein genes, complete cds.
ACC No: AF004519
Dated: 1999-01-11 | Length: 7219 | CRC: -1916222388
!!NA_SEQUENCE 1.0
ID AF004519 standard; RNA; VRL; 7219 BP.
XX
AC AF004519;
XX
SV AF004519.1
XX
DT 06-JAN-1999 (Rel. 58, Created)
DT 11-JAN-1999 (Rel. 58, Last updated, Version 2)
XX
DE Lymphocytic choriomeningitis virus Z protein and L protein genes, complete
DE cds.
XX
KW .
XX
OS Lymphocytic choriomeningitis virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC 1-LCMV-LASV complex.
XX
RN [1]
RP 1-7219
RX MEDLINE; 99073699.
RA Djavani M., Lukashevich I.S., Salvato M.S.;
RT "Sequence comparison of the large genomic RNA segments of two strains of
RT lymphocytic choriomeningitis virus differing in pathogenic potential for
RT guinea pigs";
RL Virus Genes 17(2):151-155(1998).
XX
RN [2]
RP 1-7219
RA Djavani M., Lukashevich I.S., Salvato M.S.;
RT ;
RL Submitted (16-MAY-1997) to the EMBL/GenBank/DDBJ databases.
RL Pathology and Laboratory Medicine, university of Wisconsin, 1300 University
RL Ave., Madison, WI 53706, USA
XX
DR SPTREMBL; Q9YZ25; Q9YZ25.
DR SPTREMBL; Q9YZ26; Q9YZ26.
XX
FH Key Location/Qualifiers
FH
FT source 1. .7219
FT /db_xref="taxon:11623"
FT /organism="Lymphocytic choriomeningitis virus"
FT /strain="WE"
FT CDS 89. .361
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9YZ26"
FT /note="ring-finger protein"
FT /product="Z protein"
FT /protein_id="AAD03395.1"
FT /translation="MGQGKSKEERDTSNTGRAELLPDTTYLGPLNCKSCWQKFDSLVRC
FT HDHYLCRHCLNLLLSVSDRCPLCKYPLPTKLKVSTVPSSLPPYEE"
FT CDS complement(558. .7187)
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9YZ25"
FT /note="L polymerase"
FT /product="L protein"
FT /protein_id="AAD03396.1"
FT /translation="MDETIADLRELCLNYIEQDERLSRQKLNFLGQREPRMVLIEGLKL
FT LSRCIEIDSADKSGCIHNHDDKSVETILIDSGIVCPGLPLIIPDGYKLIDNSLILLECF
FT VRSTPASFEKKFIEDTNKLACIKEDLAVAGITLVPIVDGRCDYDNSFMPEWVNFKFRDL
FT LFKLLEYSSQDEKVFEESEYFRLCESLKTTVDKRSGMDSMKILKDARSFHNDEIMKMCH
FT DGVNPNMSCDDVVFGINSFFGRFRRDLLNGKLTRNFQKVSPEGLIKEFSELYETLTDND
FT DILMLSREAVESCPLMRFITAETHGHERGSDANTEYERLLSMLNKVKSLKLLNTRRRQL
FT LNLDVLCLSSLIKQSISKGLENDKHWVGCCYSSVNDRLVSLQSTKEEFIRLLKNRRKSR
FT VHKKASLDELFRVSINEFIAKIQKCLSAVGLSFEHYGLSESLVQECHIPFAEFENFVRA
FT GAHPVMHYTKFEDYTFQPNIEQLRGLQSLRKLSSVCLALTNSMKTSSVARLRQNQLGSV
FT RYQVVECKEVFCQTIKLDSEEYHLLYQKTGESSRCYSIQGPDGHLISFYADPKRFFLPI
FT FSDAALHNMIDTMISWIRSCPDLKDSLIDIETALRTLILLMLTNPTKRNQKQVQNIRYL
FT VMAIVSDFSSTSLMDKLKEDLITPAEKVVYRLLRFLIRTIFGTGEKVLLSAKFKFMLNV
FT SYLCHLITKETPDRLTDQIKCFEKFFEPKSELGFFVNPKRTITPEEECVFYEQMRKFTG
FT KDIDCQHSTPGVNLEIFSMMVSSFNNGTLILKGEKRLNNLDPMTNSGCATALDLASNKS
FT VVVNKHLNGERLLEYDFNKLLVSAVSQITEGFMRKQKYKLRHSDYEYKVSKLVSRLVIG
FT SRKTEADKLEDDPVDVCFDGEEETSFFRSLEDKVNSTITRYNRGTRLNDRQGGGEFKNT
FT KGLHHLQIVLSGQRAYLRKVILSEISFHLVEDFDPSSLTNDDMRFICEAVEGSTELSPL
FT YFTSAVKEQCGLDEMARNLCRKFFSEGDWFSCMKMILLQMNANAYSGKNRHMQRQSLNF
FT KFDWDKLEEDVRISERESNSESLSKALSLTKCMSAALKNLCFYSEESPTSYTSVGPDSG
FT RLKFALSYKEQVGGNRELYIGDLRTKMFTRLVEDYFESFSSFFSGSCLNNDKEFENAIL
FT SMTINVREGLLNYSMDHSKWGPMMCPFLFLMLLQNLKLGDDQYVRSGKDHVSTLLTWHM
FT HKLVEVPFPVVNAMMKSYVKSKLKLLKGSGTTVTERIFREYFEMGVVPSHISSLIDMGQ
FT GILHNASDFYGLISERFINYCIGVIFGERPEAYTSSDDQITLFDKRLSDLVDSDPEEVL
FT VLLEFHSHLSGLLNKFISPKSVVGRFAAEFKSRFYEWGEEVPLLTKFVSAALHNVKCKE
FT PHQLCETIDTMADQAIANGVPVFFVNCIQRRTLDLLKYANFPLDPFLLNTHTDVKDWLD
FT GSRGYRIQRLIEELCPSETKIMRKLVRRLHHKLKNCECNEEFFLDLFNREKNEAILQFG
FT EILGLEDDLNELASINWLNLNEMFPLRMVLRQKVVYPSVMTFQEEKIPSLIKTLQNKLC
FT SKFTRGAQKLLSEAINKSAFQSCVSSGFIGLCKTLGSRCVRNKNRENMYIRKVLEDLTM
FT DEHVTRVHKQDGVMLYICDKQRHPEAHRDHINLLRPLLWDYICISLSNSFELGVWVLAE
FT PVKGKNERNLAVRHLNPCDYVARKPESSRLLEDKVSLNHVIQSVRRLYPKIFEDQFLPF
FT MSDVSSKNMRWSPRIKFLDLCVLIDINSESLSLISHVVKWKRDEHYTVLFSDLVNSHQR
FT SDSSLVDEFVVSTRDVCKNFLKQVYFESFVREFVATARTLGNFSWFPHKDMMPSEDGAE
FT DLGPFQSFILKVVNKNIERPMFRNDLQFGFGWFSYRVGDVVCNAAMLIKQGLTDPKAFK
FT SLRDLWDYMLSSTGGILEFSITVDFTHNQNNTDCLKKFSLIFVVKCQLQSPGVADYLSC
FT SHFFKGEVDRRLLDECLNLLRTDSIFKANDGVFDIRSEEFEDYMEDPLTLGDSLELELI
FT GSRRILNEIKSTDFERIGPEWEPVPLTIRMGALFEGRNFVQNISVKLETKDMRVFLAGL
FT EGYGKISDVLRRLFLHRFRIGEHLLGSEISVILQELCMDRSVMLTPLSFVPDWFTFRDC
FT RLCFSRSKNTVMYETTGGKFRLKGKSCDDWLGGSVAKEID"
XX
SQ Sequence 7219 BP; 2047 A; 1738 C; 1298 G; 2136 T; 0 other;
AF004519 Length: 7219 September 18, 2002 10:52 Type: N Check: 1057 ..
1 cgcaccgggg atcctaggcg tttagttgcg ctgctttatt gcacagcttc
51 actctgctaa actatcagga actgaccgat catcagccat gggccaaggc
101 aagtccaaag aagaaaggga caccagcaat acaggcagag cagagctttt
151 gccagacacc acctatcttg gtcctctaaa ttgtaaatca tgttggcaga
201 aatttgacag cttggttaga tgccatgacc actatctttg cagacactgt
251 ctgaatctcc tgctgtcagt ttccgacaga tgtcctctct gtaagtatcc
301 actgccaacc aaactgaagg tgtcaacagt cccaagctcc ctacctccct
351 atgaggagta acacgcccca gacctcgaca cagcaggcca cccaacgcag
401 aaaaaccaca cacaagccgg cacacacaga cacagcaacc agcacaaagc
451 gcagaacacg cacacacaca cacacatact cttaccgccc ccaccacgat
501 tccccccccc ggggagcgac cccccgggag cccgggaggg ccccgcggag
551 atgccggcta gtcgatctcc ttggccaccg acccgcctag ccaatcgtca
601 caggatttcc ccttgagtct aaacttgccc ccagttgtct catacattac
651 agtgttcttt gacctgctga agcagagcct acaatctctg aaggtgaacc
701 aatctggcac aaaagacaat ggtgtcagca tgacggatct gtccatgcag
751 agctcctgga ggattacact tatctctgag cccagcaagt gttcgccgat
801 tctgaatcga tgcaggaaga gtcttctgag gacatcacta atttttccat
851 agccctcgag ccctgccaga aagaccctca tgtcctttgt ctctaatttc
901 acagagatat tctgaacaaa gtttctccct tcaaagaggg cacccatcct
951 tatggtcaga ggcacaggct cccactcagg cccaatcctc tcaaagtcag
1001 tagatttgat ctcattcaga atccttctag aacctatcag ttcaagttct
1051 agtgaatcac caagtgtcaa agggtcttcc atgtaatctt caaactcttc
1101 agacctaatg tcaaagactc catcattcgc tttaaagata gagtctgtcc
1151 tcaacagatt gagacactca tctaataatc tcctgtcaac ctcacctttg
1201 aagaaatgag agcatgataa gtaatcagct acacctggac tctgtaattg
1251 gcatttaacc acaaagatca atgaaaattt cttcaagcag tcagtgttgt
1301 tctggttgtg tgtgaaatcc actgtgattg agaactccaa tatcccgcct
1351 gtgctgctga gcatgtaatc ccacagatct cttaaagatt taaatgcttt
1401 tggatctgtc aaaccctgct taattaacat agcggcatta cacacaacat
1451 cccccacacg gtaagagaac catccaaaac caaactgcaa gtcattccta
1501 aacatgggcc tctctatatt tttgttcacc actttcaaaa tgaatgattg
1551 gaaggggccc aggtcttcag caccatcttc agatggcatc atgtccttat
1601 gggggaacca tgaaaagtta cctaaggtcc tagctgttgc aacaaactct
1651 cgtacaaatg attcgaaata cacttgcttc aaaaagttct tgcagacatc
1701 ccttgtgcta acaacaaatt catcaactaa acttgagtct gaccgctggt
1751 gagagttgac gagatcagaa aacagcacag tgtaatgttc gtcccttttc
1801 cacttgacaa catgagaaat gagtgacaaa gactctgagt tgatgtcaat
1851 caggacacag aggtcaagga atttaatcct gggactccat ctcatatttt
1901 ttgagctcac atcagacatg aatgggagaa actgatcctc aaagattttg
1951 gggtacagtc gcctcacaga ttgaattaca tgattcaaac tcactttatc
2001 ctctagtagt ctcgaactct caggctttct tgctacataa tcacatggat
2051 ttaagtgcct aacagccaaa tttctctcgt tctttccttt cacaggttct
2101 gctaaaaccc aaactcccag ctcaaaagag ttgctcaatg agatgcaaat
2151 gtagtcccag agaaggggcc tcaaaaggtt gatgtggtca cggtgagcct
2201 ctgggtgtct ctgcttgtcg caaatgtaca acatcacacc atcttgtttg
2251 tgaacccttg tgacatgctc atccatggtt agatcttcaa gcacctttct
2301 gatatacata ttttccctgt ttttatttct cacacaccta cttcctaaag
2351 tcttacagag acctataaag ccggatgaga cacaactctg aaaagctgat
2401 ttgttgattg cctctgacag cagcttctgt gcacctcttg tgaacttact
2451 acaaagctta ttttggagtg ttttaatcaa tgaggggatc ttttcctctt
2501 gaaaggtcat tactgatggg taaaccactt tttgtctcag aaccatcctc
2551 aatgggaaca tttcattcag attcaaccaa ttgatgcttg ccaactcatt
2601 aagatcatcc tcaagaccaa gaatctctcc aaattgaagg atggcctcat
2651 tcttttccct gttgaagagg tctagaaaaa attcctcgtt acattcacag
2701 ttcttgagtt tgtgatgtag tcttcttaca agttttctca tgatctttgt
2751 ttcactggga cacaattctt caatgagtct ttggattcta taacctctag
2801 aaccatctaa ccaatccttt acatcagtgt gagtgtttaa caagaatgga
2851 tctaaaggga aattagcata tttcaagaga tccagtgtcc tccgctggat
2901 acagtttacg aaaaaaactg ggacgccatt tgctatagct tgatcagcca
2951 tcgtatctat tgtctcacaa agttgatgcg gctctttaca cttaacattg
3001 tgtagtgccg cagacacaaa tttcgtgagg agagggacct cctcccccca
3051 ctcataaaat ctggatttga attccgctgc aaaccgccca accacacttt
3101 ttggactgat gaacttgttc aacaaaccac tcaagtgaga gtggaattcc
3151 agcaagacaa ggacttcttc tgggtcacta tcaactaagt cactcaatct
3201 cttgtcaaat aaagtgatct gatcatcact tgatgtatag gcttctggtc
3251 tttctccaaa aatgacacca atacaataat tgataaacct ttcactaatt
3301 aaaccgtaaa aatcagaagc attgtgtagg atcccctgtc ccatgtcaat
3351 gagactagat atgtgggatg gcactacccc catttcaaaa tactctctaa
3401 agattctctc tgtaacagtc gttcctgacc ctttgagaag cttgagtttt
3451 gatttaacat atgatttcat cattgcattc acaacaggga aggggacttc
3501 aacaagttta tgcatatgcc aagtcaacaa ggtgctaaca tgatcttttc
3551 cagaacgcac gtactgatca tcacccagtt tgagattttg gagaagcatt
3601 aagaatagga atgggcacat catcggcccc catttgctgt gatccatgct
3651 gtagtttaac aacccttctc tcacattgat agtcattgac aagattgcat
3701 tttcaaactc tttgtcattg tttaaacaag atcctgaaaa gaaactagaa
3751 aaggattcaa aataatcttc taccaatctt gtgaacattt ttgtcctcaa
3801 atccccaatg taaagctctc tatttccccc aacctgctct ttgtatgaca
3851 atgcaaactt tagtctccca gagtcagggc caactgaagt gtatgatgtt
3901 ggtgattctt ctgagtaaaa acacagattc tttagagcag cactcatgca
3951 ttttgtcaat gaaagggcct tacttagaga ttcagaattg ctttcccttt
4001 cactgattct cacatcttct tccaatttgt cccagtcaaa tttaaaattt
4051 aagctctgcc tctgcatgtg tctgttcttc cctgaatacg catttgcatt
4101 catctgtaac aagatcatct tcatacatga gaaccaatca ccctctgaga
4151 agaactttct acagaggttt cttgccatct cgtccagacc acattgttct
4201 ttgacagctg atgtaaaata caatggtgac agttctgttg aaccttcaac
4251 agcctcacaa ataaatctca tgtcgtcatt ggtgagagag gatggatcaa
4301 agtcctctac tagatgaaat gaaatttctg ataaaatgac cttcctcaga
4351 taagctcttt gacctgacaa aacaatctga aggtggtgta gtccttttgt
4401 gttcttgaat tctccccccc cttgcctgtc attaagccta gtgcctctat
4451 tataccgtgt tattgtggag ttgaccttat cttctaaact cctaaaaaaa
4501 cttgtctcct cctccccatc gaaacacaca tctaccggat catcttccaa
4551 tttgtctgcc tctgttttcc tggaaccgat gactaatcta gagacaagct
4601 ttgagacctt atattcgtaa tctgagtgtc tcagcttata cttttgtttc
4651 ctcatgaagc cctctgtaat ttggctcaca gcactaacaa gcaatttgtt
4701 aaaatcatac tccaaaagcc gttctccatt cagatgttta ttgacaacca
4751 cacttttgtt gcttgcgaga tctaatgctg tcgcacatcc agagttggtc
4801 atggggtcca gattgttgag ccttttctct ccttttagga ttaaggtgcc
4851 attgttgaat gaagatacca tcatgctaaa gatctctaaa ttaacaccag
4901 gggttgaatg ctgacaatca atatctttac cggtgaactt cctcatttgt
4951 tcataaaaaa cacattcctc ttcgggtgtg attgttctct tagggttgac
5001 aaagaaacct aactcactct tgggctcaaa gaacttttca aaacatttta
5051 tctgatctgt caatctatca ggggtctcct ttgtgatcaa atgacacagg
5101 tatgacacat tcaacataaa cttaaatttt gcacttaata acaccttttc
5151 accagtacca aaaattgtcc taatcaaaaa ccgaagcagc ctgtacacca
5201 ccttctcggc aggtgtgatt agatcctcct tcaacttatc cattaatgag
5251 gtcgatgaaa agtctgagac gatggccatc actaaatacc taatattttg
5301 aacctgcttt tgatttctct ttgttgggtt ggtgagcatc agtaggatta
5351 atgtccttag tgcagtctca atgtcaataa gagaatcttt caagtcaggg
5401 catgaccgaa tccatgaaat cattgtgtct atcatgttgt gcaacgccgc
5451 atctgaaaaa attggtaaaa agaaccgttt tggatctgcg taaaaggaaa
5501 tcaagtgacc atccggacct tgtatggaat aacacctcga ggattctcca
5551 gttttctgat atagtagatg atactcttcg gaatccagtt ttattgtctg
5601 gcaaaacacc tctttgcact ccaccacttg atatctcaca gaccccagtt
5651 ggttctgtct caacctggca actgagcttg ttttcatgct gtttgttaga
5701 gccaaacaaa cagatgacag ttttctcaaa ctctgtaaac ccctcaattg
5751 ctctatgtta ggctggaaag tgtaatcttc aaattttgtg taatgcatta
5801 caggatgagc tccggctctc acaaagttct caaattcagc aaatggtata
5851 tggcattctt gcacgaggct ttctgatagt ccataatgct caaaactaag
5901 tcccactgct gataggcatt tctggatttt tgctatgaac tcatttatgg
5951 ataccctaaa aagctcatca agagatgctt ttttgtgcac tcttgacttt
6001 cttctgttct tcaaaagtct gatgaattct tctttggtac tttgaaggct
6051 cacaagccta tcattcacac tactgtagca acaaccaacc caatgtttat
6101 cattttccaa ccctttggaa attgactgct taataagtga agaaagacat
6151 aagacatcta agttcagcag ctgtctcctt ctagtgttta ataattttaa
6201 gcttttcacc ttgttcaaca tagagagtag cctttcatac tcagtgttag
6251 catcgcttcc cctctcatgc ccatgggtct ctgctgtaat gaacctcatt
6301 aaggggcagg attcaactgc ctccctgctc aacattaata tgtcatcatt
6351 atcagtaagg gtttcataaa gttcagagaa ttccttgatc aagccttcag
6401 ggcttacctt ttggaaattc cttgtgagtt tcccatttag caggtccctc
6451 ctaaacctgc caaaaaagga atttatgcca aagaccacat catcgcaact
6501 catgttgggg ttgacaccat cgtggcacat tttcataatc tcatcgttat
6551 gaaatgatct tgcgtctttc agaattttca ttgagtccat gccggaacgt
6601 ttgtcaacag tggtcttcag agactcacag agcctgaagt actcagactc
6651 ctcaaaaact ttctcatctt gactagaata ctccaaaagt ttaaatagga
6701 ggtctctaaa tttaaaattc acccattctg gcatgaaact gttatcataa
6751 tcacaacgac catccactat tggaaccagt gtgatgcctg caacagcaag
6801 atcttctttg atgcatgcta gtttgttggt gtcctcaatg aacttctttt
6851 caaaactagc tggtgtgctt ctaacaaaac attcaagaag aataagggaa
6901 ttgtcaatca acttataacc atcagggatg atgagtggca gtcctggaca
6951 cacaatccca gagtctatta ggattgtttc aacagatttg tcgtcgtggt
7001 tgtgtatgca accacttttg tctgcactgt ctatctctat acagcgtgat
7051 aacaatttga gtccctcaat taggaccatt ctgggttctc tttgtcccag
7101 gaagttgagt ttttgccttg acagcctctc gtcctgttct atgtagttta
7151 gacacaactc tctcagatct gcaatagttt catccattgc gcatcaaaaa
7201 gcctaggatc ctcggtgcg