Sequence of DPV Tomato mottle Taino virus
Tomato mottle Taino virus component A, complete sequence.
ACC No: AF012300
Dated: 2005-04-15 | Length: 2597 | CRC: 348240611
!!NA_SEQUENCE 1.0
ID AF012300 standard; circular genomic DNA; VRL; 2597 BP.
XX
AC AF012300;
XX
SV AF012300.1
XX
DT 23-AUG-1997 (Rel. 52, Created)
DT 15-APR-2005 (Rel. 83, Last updated, Version 6)
XX
DE Tomato mottle Taino virus component A, complete sequence.
XX
KW .
XX
OS Tomato mottle Taino virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2597
RA Ramos P.L., Guerra O., Peral P., Oramas P., Guevara R.G.,
RA Rivera-Bustamante R.;
RT "Taino tomato mottle virus, a new bipartite geminivirus from Cuba";
RL Plant Dis. 0:0-0(1997).
XX
RN [2]
RP 1-2597
RA Ramos P.L., Oramas P., Guevara-Gonzalez R., Rivera-Bustamante R.;
RT ;
RL Submitted (02-JUL-1997) to the EMBL/GenBank/DDBJ databases.
RL Ingenieria Genetica, CINVESTAV Irapuato, Apdo Postal 629, Irapuato, Gto
RL 36500, Mexico
XX
FH Key Location/Qualifiers
FH
FT source 1. .2597
FT /db_xref="taxon:223358"
FT /mol_type="genomic DNA"
FT /note="isolated from Cuba"
FT /organism="Tomato mottle Taino virus"
FT /segment="component A"
FT gene 189. .944
FT /gene="CP"
FT CDS 189. .944
FT /codon_start=1
FT /db_xref="GOA:O36621"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProt/TrEMBL:O36621"
FT /gene="CP"
FT /product="coat protein"
FT /protein_id="AAD09665.1"
FT /translation="MPKRDRTWRSIAGTSKVSRNANYSPRTGSGPIGNKASEWVNRPMY
FT RKPKIYRMMRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCVSDVTRGNGITHRVGKRF
FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATV
FT KNDLRDRYQVMHRFHTKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAAKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSILN"
FT gene 941. .1339
FT /gene="AL3"
FT CDS complement(941. .1339)
FT /codon_start=1
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProt/TrEMBL:O36622"
FT /product="AL3"
FT /protein_id="AAD09666.1"
FT /translation="MDSRTGELITAHQAENGVYIWEIQNPLYFKMYRVEDLLFTRTRVY
FT HAQIRFNHNLRRALHLHKAYLNFQVWTTSTTASGSTYLARFRFLVNMYLDQIGVISINN
FT VIRAVRFATNRAYVNYVLENHSIKFKFY"
FT gene 1086. .1475
FT /gene="TrAP"
FT CDS complement(1086. .1475)
FT /codon_start=1
FT /db_xref="GOA:O36623"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProt/TrEMBL:O36623"
FT /product="transactivator protein"
FT /protein_id="AAD09667.1"
FT /translation="MRCSSPSQPPSIKIAHRQGKKRAIRRRRVDLQCGCSIYFHLNCAG
FT HGFTHRGTHHCTSGGEWRVYLGNTKSPLFQDVQSRGLAVHQNQGIPRTNTIQPQPEESV
FT ASPQSLPELPSLDDIDDSFWINIFS"
FT gene 1387. .2472
FT /gene="rep"
FT CDS complement(1387. .2472)
FT /codon_start=1
FT /db_xref="GOA:O36624"
FT /db_xref="HSSP:1L5I"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProt/TrEMBL:O36624"
FT /note="AL1, Rep"
FT /product="replication associated protein"
FT /protein_id="AAD09668.1"
FT /translation="MPRKGSFSVKAKNYFLTYPQCSLSKEEALSQIQNLNTPVDKKFIK
FT ICRELHENGEPHLHVLVQFEGKYNCTNNRFFDVVSPTRSAHFHPNIQGAKSSSDVKTYI
FT TKDGDTLEWGEFQIDGRSARGGQQSANDSYAKALNAGNVQSAMAVLKEEQPKDFVLHNH
FT NIRSNLERIFAKAPEPWVPPFPLSSFTNVPDEMQEWADVYFGAGSAARPNRPMSIVIEG
FT DSRTGKTMWARALGPHNYLSGHLDFNTRVYSNDVQYNVIDDIAPHYLKLKHWKELLGAQ
FT RDWQSNCKYGKPVQIKGGIPAIVLCNPGEGASYKDFLSKDENTSLRDWTIKNAMFITLT
FT TPLYQDSTQARQEEGNQETAC"
XX
SQ Sequence 2597 BP; 650 A; 583 C; 602 G; 762 T; 0 other;
AF012300 Length: 2597 April 19, 2005 08:55 Type: N Check: 4503 ..
1 ggccatccgc tataatatta ccggatggcc gcgcgaaatt tccccccttt
51 ttcgggtttg ggctctcttt aatttgcacg accaatcata atgcgtcttc
101 taggcttagt tatgtacaac aacttgggcc tgaagttgtt gggcctttat
151 aaattaaaga gtattcggcc cactatcttt aattcaaaat gcctaagcgc
201 gatcgtacat ggcgttctat cgcgggaacc tcaaaggtta gccgcaatgc
251 taactactcg cctcgtacag gaagtgggcc gataggtaac aaggcatccg
301 aatgggttaa taggcccatg tacaggaagc ccaagatcta ccggatgatg
351 aggacccccg atgtgcccag aggatgtgaa ggcccatgta aggtccagtc
401 ctacgaacag cgccatgata tttcacatgt cgggaaggtc atgtgtgtct
451 ctgacgtgac acgtggtaat ggcattaccc atcgtgtggg caagcgcttc
501 tgtgttaagt ctgtgtatat tctaggcaag atatggatgg atgagaacat
551 caaactgaag aaccacacga acagcgtcat gttttggcta gtacgagacc
601 ggagacctta tggaactccc atggatttcg gacaggtgtt caacatgtac
651 gacaacgagc ccagtactgc cactgtgaag aacgacctcc gggatcgtta
701 ccaagttatg cacaggttcc atactaaggt gactggtggt cagtatgcga
751 gcaacgagca ggctctggtt cgacggttct ggaaagtgaa caaccacgtg
801 gtgtacaatc accaggaagc cgcgaagtac gagaatcata cggagaacgc
851 cctattattg tatatggcat gtactcatgc ctctaatcct gtatatgcaa
901 cgcttaagat ccggatctat ttttatgatt cgatcttgaa ttaataaaat
951 ttgaatttta ttgaatgatt ctccagtaca taatttacat atgctctgtt
1001 tgttgcgaat cgaacagctc taattacatt gttaattgaa atgacgccta
1051 tctgatctaa atacatatta actaaaaatc taaacctagc taaatatgtt
1101 gatccagaag ctgtcgtcga tgtcgtccag acttggaagt tcaggtaggc
1151 tttgtggaga tgcaacgctc tcctcaggtt gtggttgaat cgtatttgtg
1201 cgtggtatac cctggttctg gtgaacagca agtcctctac tctgtacatc
1251 ttgaaataaa ggggattttg tatttcccag atatacacgc cattctccgc
1301 ctgatgtgca gtgatgagtt cccctgtgcg tgaatccatg tcccgcacag
1351 tttaagtgga agtatatgga gcacccgcac tgcagatcaa cacgccgtct
1401 cctgattgcc ctcttcttgc cttgcctgtg tgctatcttg atagaggggg
1451 gttgtgaggg tgatgaacat cgcattcttg atagtccagt ctctgagaga
1501 tgtgttctcg tctttgctga ggaagtcttt atagctggca ccctcaccag
1551 gattgcaaag cacgattgct gggattccgc ctttaatttg aactggctta
1601 ccgtacttgc agtttgattg ccaatctctc tgggccccca gcaattcttt
1651 ccagtgcttt agctttagat aatgcggtgc gatgtcatca atgacgttat
1701 actgcacgtc gtttgaatag accctggtat tgaagtccaa atgtccactc
1751 agataattat gtgggcctaa cgcacgcgcc cacatcgtct tccctgtcct
1801 tgaatcacct tctatgacaa tactcatggg tctatttggc cgcgcagcgg
1851 aaccagctcc aaaataaaca tccgcccact cttgcatctc atcgggaacg
1901 ttagtgaaag acgagagggg aaacggagga acccatggtt ccggagcctt
1951 ggcgaatatt ctttctagat ttgagcggat gttatgatta tgcaggacaa
2001 aatcttttgg ctgttcttct tttaaaactg ccatggcaga ctgaacattt
2051 cctgcattta acgcctttgc atatgaatcg ttagctgatt gttgacctcc
2101 cctagcagac ctaccgtcga tctggaattc tccccattcc agtgtgtctc
2151 cgtccttggt aatgtatgtt ttgacgtcgg agctggattt agctccctgt
2201 atgttcggat ggaaatgtgc tgacctggtt ggggagacca catcgaagaa
2251 tctgttattc gtgcagttgt atttgccttc gaattggaca agcacgtgga
2301 gatgaggttc cccattttca tgcaactctc tgcagatctt gatgaatttc
2351 ttgtctactg gtgtgtttag gttttgtatt tgggaaagtg cttcttcttt
2401 actaagggaa cactgtggat acgtgaggaa ataatttttg gctttaactg
2451 agaaagaacc cttccgtggc atatttgtaa atatatgatg ttcccccaat
2501 tgctctctct cacaaaactc atatcaattg ggggaactgg gggaacattt
2551 atactacaac cctctataga acttttaatc tcattcatac acgtggc