Sequence of DPV Hollyhock leaf crumple virus
Hollyhock leaf crumple virus-[Giza], complete genome.
ACC No: AF014881
Dated: 2005-04-15 | Length: 2755 | CRC: 663381211
!!NA_SEQUENCE 1.0
ID AF014881 standard; circular genomic DNA; VRL; 2755 BP.
XX
AC AF014881;
XX
SV AF014881.1
XX
DT 06-JAN-1999 (Rel. 58, Created)
DT 15-APR-2005 (Rel. 83, Last updated, Version 5)
XX
DE Hollyhock leaf crumple virus-[Giza], complete genome.
XX
KW .
XX
OS Hollyhock leaf crumple virus-[Giza]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2755
RA Bigarre L., Chazly M., Salah M., Ibrahim M., Padidam M., Nicole M.,
RA Peterschmitt M., Fauquet C., Thouvenel J.C.;
RT "Characterization of a new begomovirus from Egypt infecting hollyhock
RT (Althea rosea)";
RL Eur. J. Plant Pathol. 107:701-711(2001).
XX
RN [2]
RP 1-2755
RA Bigarre L., Chazly M., Salah M., Padidam M., Nicole M., Peterschmitt M.,
RA Fauquet C., Thouvenel J.C.;
RT ;
RL Submitted (19-JUL-1997) to the EMBL/GenBank/DDBJ databases.
RL Ca Phyma, Cirad, 2477, Val Montferrand, Montpellier 34032, France
XX
FH Key Location/Qualifiers
FH
FT source 1. .2755
FT /db_xref="taxon:223280"
FT /mol_type="genomic DNA"
FT /note="from Egypt"
FT /organism="Hollyhock leaf crumple virus-[Giza]"
FT misc_feature join(2610. .2755,1. .138)
FT /note="large intergenic region"
FT CDS 139. .507
FT /codon_start=1
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProt/TrEMBL:Q9YYU1"
FT /note="putative replication regulator; ORF AV2"
FT /product="pre-coat protein"
FT /protein_id="AAD01547.1"
FT /translation="MWDPLVNDFPATVHGFRCMLAIKYIQAVRSEYDPGSLGFDLLSDL
FT IGVLRAGNYVEATGRYHNFHSRLEGTTSSELRQPNAVRCSCPHCPRHKQTPSVVQQTQL
FT QEAQNVQNVSEPRCPKGV"
FT CDS 299. .1075
FT /codon_start=1
FT /db_xref="GOA:Q9YYU0"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProt/TrEMBL:Q9YYU0"
FT /note="ORF AV1"
FT /product="coat protein"
FT /protein_id="AAD01546.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPMQSGVRAPTVLVTNKRRAW
FT SNRPNYRKPRMYRMYRNPDVPKGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTKGTGLTH
FT RTGKRFTVKSIYILGKIWMDENIKKQNHTNNVMFFLVRDRRPYGNSPMDFGQVFNMFDN
FT EPSTATIKNDYRDRFQVMRKFSATVTGGPSGMKEQALVRRFFKINSHTVYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN"
FT CDS complement(1072. .1473)
FT /codon_start=1
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProt/TrEMBL:Q9YYT9"
FT /note="ORF AC3"
FT /product="unknown"
FT /protein_id="AAD01545.1"
FT /translation="MDSRTGEIITAHQAENGVLIWTINNPLFFKTQQEIWTSSSKGKVI
FT DIQIRFNHNLRKALGIHKCFLNFRIWTISRPPNGLFLTAFRKQVYKYLNTLGVISLNNV
FT IRAVNHVLWNVLKTTIEVHSSTYIKFNIY"
FT CDS complement(1217. .1621)
FT /codon_start=1
FT /db_xref="GOA:Q9YYT8"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProt/TrEMBL:Q9YYT8"
FT /note="ORF AC2"
FT /product="putative transcriptional regulator"
FT /protein_id="AAD01544.1"
FT /translation="MRPSSPSQISCTQVPIKVKHREAKKRAIRRRRIDIPCGCTVYVAF
FT TCRDNGFTHRGNHHCASSREWRSYLDNQQSPFFQNPTRNLDEFFERESHRHPDPVQSQP
FT QEGIGDSQMFSQLPNLDDFTPSEWSFLNRI"
FT CDS complement(1521. .2609)
FT /codon_start=1
FT /db_xref="GOA:Q9YYT7"
FT /db_xref="HSSP:1L5I"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProt/TrEMBL:Q9YYT7"
FT /note="ORF AC1"
FT /product="replicase"
FT /protein_id="AAD01542.1"
FT /translation="MAPPKRFKIYAKNYFLTYPHCSLSLSETLSQLKTLQTPVNKLYIK
FT ICRELHENGEPHLHALIQFEGKYQCTNKRFFDLVSPSRSTHFHPNIQGAKSSSDVKSYL
FT EKDGDTLEWGEFQIDARSARGGQQTANDAYAAALNAGSKSEALRVIRELAPKDFVLQFH
FT NLTSNLDRIFQEPPAPYVSPFLSSSFDQLPEELEEWAAENVVEAAARPSRPISIVIEGE
FT SRTGKTVWARSLGPHNYLCGHLDLSPKVFSNDAWYNVIDDVDPHYLKHFKEFMGAQKDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNAHLKSWALKNATFITLSNQL
FT YSGTNQSQASGGQEESNQETQD"
FT CDS complement(2159. .2452)
FT /codon_start=1
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProt/TrEMBL:Q9YYT6"
FT /note="ORF AC4"
FT /product="unknown"
FT /protein_id="AAD01543.1"
FT /translation="MGNLICMPLFNSRESTSARIKDSSTWYPQADQHISIRTFRELNQA
FT PTSSPIWRRTETPSNGESFRSMQDLQEGDNRPPMTLTPQRLTQEVSQRLLGL"
XX
SQ Sequence 2755 BP; 722 A; 551 C; 634 G; 848 T; 0 other;
AF014881 Length: 2755 April 19, 2005 08:52 Type: N Check: 4050 ..
1 accggtgggc gcgaaaaaaa aaagtggtcc ccgccacgtg aacatgtcgc
51 gcgatgctgt ccaatcaaaa cgcgcgctgt acttattata atttgaaatt
101 tgaaataaaa acttggtccc taagtagttg aaattaaaat gtgggatcct
151 ttggtgaatg atttcccggc aaccgtgcac ggttttcggt gtatgttagc
201 tataaaatat attcaggcgg ttaggtccga atacgatccc ggtagtttag
251 ggtttgattt attgtctgat ttaataggtg ttcttcgtgc cgggaattat
301 gtcgaagcga ccggcagata tcataatttc cactcccgcc tcgaaggtac
351 gacgtcgtct gaacttcgac agcccaatgc agtccggtgt tcgtgccccc
401 actgtcctcg tcacaaacaa acgccgagcg tggtccaaca gacccaatta
451 caggaagccc agaatgtaca gaatgtatcg gaacccagat gtcccaaagg
501 ggtgtgaagg tccatgtaag gtccagtcct atgaacagcg tgatgatgtg
551 aagcatactg gtattgttcg ttgtgtttca gatgtgacca agggaactgg
601 gcttacgcat cgtactggta aacggtttac tgtgaagtcc atttacatat
651 tggggaaaat atggatggat gaaaatatca agaagcagaa tcatactaac
701 aatgttatgt ttttcttggt ccgagataga aggccctatg gtaatagtcc
751 tatggatttt ggacaggttt ttaatatgtt tgataatgag cccagtactg
801 ctactataaa gaatgattat cgagatcgtt tccaggtgat gcgtaagttt
851 agtgcaacgg taactggtgg tccttctggg atgaaggaac aggctcttgt
901 tcgtaggttt tttaagatta atagtcatac agtttataat caccaggaag
951 ctgcgaagta tgagaaccat actgagaatg ctttgttgtt gtatatggca
1001 tgtactcatg cttctaatcc tgtgtatgct acgttgaaaa tacgtatcta
1051 tttctatgac tctgtatcga attaataaat attgaatttt atatatgtac
1101 ttgaatggac ttcaattgtc gtttttaata cattccataa tacatgatta
1151 actgctctaa tgacattatt aagagaaatt acaccaaggg tattcaaata
1201 tttgtacact tgtttcctaa atgcggttaa gaaaagacca ttcggagggc
1251 gtgaaatcgt ccagattcgg aagttgagaa aacatttgtg aatccccaat
1301 gccttcctga ggttgtgatt gaaccggatc tggatgtcta tgactttccc
1351 tttcgaagaa ctcgtccaga tttcttgttg ggttttgaaa aaaaggggat
1401 tgttgattgt ccagataaga acgccattct ctgcttgatg cgcagtgatg
1451 atttcccctg tgcgtgaatc cattgtctct gcacgtgaag gctacgtata
1501 ccgtgcaacc acaagggatg tcaatcctgc gtctcctgat tgctctcttc
1551 ttggcctccc gatgcttgac tttgattggt acctgagtac agctgatttg
1601 agagggtgat gaaggtcgca ttctttaatg cccaggattt gagatgcgcg
1651 ttcttttcct cgtctaaata ctctttatag gaggaattgg gacctggatt
1701 gcagaggaag attgttggga tgcccccttt aatttgaact ggcttcccgt
1751 attttgtgtt gctttgccag tccttttgtg cccccatgaa ctccttaaag
1801 tgtttcagat aatgcgggtc aacatcatct atgacgttat accatgcgtc
1851 attactgaac acctttgggc tcagatcaag atgaccgcac agataattgt
1901 gaggcccaag acttctggcc catacggtct ttcctgttct gctttcccct
1951 tcaatcacta tactaatcgg tctacttggc cgcgcagcgg cctcaacgac
2001 gttctccgcc gcccattctt caagttcttc tggaagttgg tcgaacgaag
2051 aagacaaaaa aggagaaaca taaggagctg gaggctcctg aaaaatccta
2101 tctaaattac tagttaaatt atgaaattgt aaaacaaaat ctttgggagc
2151 taactccctt ataaccctaa gagcctctga cttacttcct gcgttaagcg
2201 ctgcggcgta agcgtcattg gcggtctgtt gtccccctct tgcagatctt
2251 gcatcgatct gaaactctcc ccattcgagg gtgtctccgt ccttctccag
2301 ataggacttg acgtcggagc ttgatttagc tccctgaatg ttcggatgga
2351 aatgtgttga tctgcttggg gataccaggt cgaagaatct tttattcgtg
2401 cactggtact ttccctcgaa ttgaataagg gcatgcagat gaggttcccc
2451 attctcgtga agctctctgc aaattttgat gtatagtttg ttaactggtg
2501 tttgtagggt tttcaattgg gaaagggttt ctgataggga aagagaacag
2551 tggggataag tgagaaaata atttttggca tatattttaa aacgttttgg
2601 gggagccatt tggtcaatgt acaccgattg acttggattt catttggtgc
2651 ctgctatcgg tgtaatggtg tacaatatat agttgtacac caaatggcat
2701 tttggtaaaa atcccaataa ttttgaatcc ccatagcgcc caccgttcta
2751 atatt