Sequence of DPV Cymbidium mosaic virus
Cymbidium mosaic virus Korean type 2, complete genome.
ACC No: AF016914
Dated: 2001-06-16 | Length: 6227 | CRC: 1844802399
!!NA_SEQUENCE 1.0
ID AF016914 standard; RNA; VRL; 6227 BP.
XX
AC AF016914;
XX
SV AF016914.1
XX
DT 03-OCT-1997 (Rel. 52, Created)
DT 16-JUN-2001 (Rel. 68, Last updated, Version 2)
XX
DE Cymbidium mosaic virus Korean type 2, complete genome.
XX
KW .
XX
OS Cymbidium mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potexvirus.
XX
RN [1]
RP 1-6227
RX MEDLINE; 98302506.
RX PUBMED; 9638650.
RA Kim J.D., Koo Y.B., Chang M.U.;
RT "Genome characterization of a Korean isolate of cymbidium mosaic virus";
RL Mol. Cells 8(2):181-188(1998).
XX
RN [2]
RP 1-6227
RA Kim J.D., Koo Y.B., Jang M.U.;
RT ;
RL Submitted (01-AUG-1997) to the EMBL/GenBank/DDBJ databases.
RL Department of Microbiology, Inje University, 607 Obangdong, Kimhae,
RL Kyungnam 621-749, South Korea
XX
DR SPTREMBL; O37153; O37153.
DR SPTREMBL; O37154; O37154.
DR SPTREMBL; O37155; O37155.
DR SPTREMBL; O37156; O37156.
DR SPTREMBL; O42052; O42052.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6227
FT /db_xref="taxon:12178"
FT /organism="Cymbidium mosaic virus"
FT /strain="Korean type 2"
FT CDS 74. .4327
FT /codon_start=1
FT /db_xref="SPTREMBL:O37153"
FT /gene="RNA pol"
FT /product="RNA replicase"
FT /protein_id="AAB71853.1"
FT /translation="MARVRDTLDRLRDPSVLTSINEEAHRHIRPVLASALVNCPYALTE
FT EEADCLENLGVTVNPFAIQTHTHAAAKTEENRMLEIVGTHLPKEPSTFIFLKRSKLRYL
FT RRAANNKDIFQNQHIEPKDLLRYDDESCEVMPECSTSTAYISDALHFLSYAQLGKIFQD
FT SPKLKIQLATLVLPVESLHRHPSLHPAIYTLNYHKDGFEYIPGNHAGGAYFHEYSTLQW
FT LTLGKLIIDDPLKVKKPLTLTVQLIESLGANHLLLITRGDLRTPKLRTFARDTHVLLPQ
FT IFHPKGMNANKPLSKRRAMQLWLYAKSVKEVSERDLYAKVRQLIPTSELDLFDPVEVTH
FT LVNYLLFISHLSSVSSYDDILSSNIFQHFTIPIKNKIRELAQLFTGADQFNQLLKALDW
FT QTFSYSMPVETIHTRAANYQVAKTLRMCRDLPCDEYDRVKDVLRQLPDGVTLFEENDKQ
FT DPSSPEAEDSEDDTDSVDFNLSPTHELPPNFDSLHKGKSIIFDTDNPSTSTAPAVTFAV
FT GINSSASTNISFGSFTPEAEATPPPPMEKLPWDLWIPLLEQHGFKGKSKLYKPTGELIC
FT PITEIKTVPHCPFPDKVPDGCVLALKSIKRFATKMTMLSSRASAYTSDIKNNRTGKLLP
FT AMNMPWKASLAYVTQHGDREIPGVVIHGAGGCGKSYAIQKWLRSCSDPCAATVVCPTLE
FT LRNDWLNKIGSYEQTNIKTFEKALIQPVNNVVIFDDYTKLPPGYIETMVYHHHNLDLII
FT LTGDPMQSAYHETNRDAYISLIPDASAIFSEYCEFNINATHRNVAELACLLGVYSERQG
FT KLTVSFSTAPLSKGKVPILVPSRMKQEAFADVGNRCMTYAGCQGLTAPKIQILIDNHTT
FT FCSEQTLYTCLSRAVDQIHFINTGPNSQAFWTKLESTPYLKAFLDNYREEQTERLASTA
FT PEPEVREPAAPKTHIPVESTSGLRISALDLPEKHSREIFNKAHGFSNAIQGDGVAPMFQ
FT HQQAKDETLFKATIDARLSITHPDENKREFAMKKDTGDVLFVNYKAIMNLPHEPVPFEP
FT RLWNICKAEVQNTYLAKPIANLINGTLRQSPDFPANKIALFLKSQWVKKIEKIGAIPVK
FT PGQTIASFMQETVMLYGTMARYLRKMRQRYQPAHIFINCEKTPEDFNKFILEHWSYKQV
FT AHTNDFTAFDQSQDAAMLQFEVIKARYFNIPEDVIEGYIQIKLTAEIFLGTLSIMRLSG
FT EGPTFDANTECSIAYNATRYHINEDVTQVYAGDDMAMDHVCPEKKSFKALEKKLKLTSK
FT PLYPKQKPGDWADFCGWTITPYGIIKNPKKLDACLQLHTQLGDADKVARSYALDAKYAY
FT DLGDRIHEVLDVDEMTSHFNVIRQLHKLHQQDVLVPPETTVATAVKSQPDMEDLWLRAL
FT SFPDWTDRAQLLKRG"
FT CDS 4333. .5034
FT /codon_start=1
FT /db_xref="SPTREMBL:O37154"
FT /note="movement protein 1"
FT /gene="MP1"
FT /product="MP1"
FT /protein_id="AAB71854.1"
FT /translation="MELAYLVRLLEHNKFERTNLPLSSPLVVHGIAGSGKSTILTTFHH
FT HYPAHPIFSHSPTLLDPSNRIYQQCITTDSVPDGAIVDEYNYKALDYSRCLALFGDPLQ
FT LPHSLRPHYYSSRTHRYGPKLTSLLNDLFHLSITSLAPVDNLDYADPFAVDPSGFTIAD
FT EEVYNFVSQQVPGTLLPLDTVGLEYSSVSFYCSDLRRCVVLRPLSTFIALTRAKGNLTI
FT FDFNARFSSTT"
FT CDS 5009. .5347
FT /codon_start=1
FT /db_xref="SPTREMBL:O37155"
FT /note="movement protein 2"
FT /gene="MP2"
FT /product="MP2"
FT /protein_id="AAB71855.1"
FT /translation="MPGLVPPPDHSKSLFVLAIGITVVSALFVLKSHTFPIAGDNIHRF
FT PSGGQYKDGTKQINYCPPTHARYPKYPDYKWLARTAAIVIPLCLYISYHPGNNIRRICP
FT CCNTYHHP"
FT CDS 5202. .5477
FT /codon_start=1
FT /db_xref="SPTREMBL:O37156"
FT /note="movement protein 3"
FT /gene="MP3"
FT /product="MP3"
FT /protein_id="AAB71856.1"
FT /translation="MLGTRNILTTSGLPVPPPLSSLSAYIFPTILAIIFAVFALVAIHI
FT TTPEPFCTIHIDGASITITNCPDPAAILDKVAIGPWLGLSYHNNLK"
FT CDS 5480. .6151
FT /codon_start=1
FT /db_xref="SPTREMBL:O42052"
FT /gene="CP"
FT /product="coat protein"
FT /protein_id="AAB71857.1"
FT /translation="MGESTPTPAATYSAADPTSAPKLADLAALKYSPVTSSIATPEEIK
FT AITQLWVNNLGLPADTVGTAAIDLARAYADVGASKSATLLGFCPTKPDVRCAALAAQIF
FT VANVTPRQFCAYYAKVVWNLMLATNDPPANWAKAGFQEDTRFAAFDFFDAVDSTAALEP
FT AEWQRRPTDRERAAHSIGKYGALARQRIQNGNLITNIAEVTKGHLGSTNTLYALPAPPT
FT E"
XX
SQ Sequence 6227 BP; 1654 A; 1823 C; 1219 G; 1531 T; 0 other;
AF016914 Length: 6227 December 21, 2001 14:44 Type: N Check: 6797 ..
1 ggaaaaccaa acctcacgtc tactccgcta tccgagcgaa atagcagccc
51 cagcataggc aatatcgcgc tccatggccc gagtacgtga cacccttgac
101 aggctccgtg atccgtcggt ccttacctca attaacgagg aagcccaccg
151 acatatccgc cctgtccttg cctcggcact cgtaaactgc ccttacgcgt
201 tgaccgagga agaggccgac tgtctcgaaa atctcggcgt gacagtcaat
251 cccttcgcca tccaaacgca tacacatgct gcagctaaaa ctgaagaaaa
301 tcgcatgttg gaaattgttg gcacccacct ccctaaagaa ccttccacct
351 tcatattcct taagcggagc aagcttcgct acctacgacg cgccgccaac
401 aacaaagaca tatttcaaaa ccaacacatt gagcctaaag acttattgcg
451 ttacgatgac gagtcttgtg aagtgatgcc agaatgctcc acaagcacag
501 cctacatcag cgatgctctc catttcttga gctacgctca gcttgggaaa
551 atattccagg attctcccaa gctgaaaatc cagctggcaa ccctggtcct
601 ccccgtggaa tccctccata ggcacccatc tcttcatcct gccatctata
651 ctttgaacta ccacaaagat ggctttgaat atatacccgg caatcacgcc
701 ggaggtgcct atttccacga gtactccact ctgcagtggt tgactctcgg
751 gaaactaatt atcgacgatc ctttgaaagt aaagaaaccc cttactctta
801 ctgtacagct aatagaaagt ctaggggcca accatctttt acttatcacc
851 cgaggggatc ttcgcacacc caaactaagg acattcgcta gagataccca
901 tgttctacta ccacaaatat tccatcctaa gggtatgaat gcgaacaaac
951 cattgtccaa acgtagagct atgcagttgt ggctctacgc caaatctgtt
1001 aaagaggtga gcgaacggga tctttatgct aaggtgaggc aattgatccc
1051 gacttccgag ttagaccttt ttgaccctgt ggaggtgacc cacttggtca
1101 attacttact attcatcagt cacctttcct ccgtatcttc gtatgacgac
1151 atcttgtcgt ctaatatatt ccaacatttc actattccaa tcaagaacaa
1201 gatacgggaa ttggcccagc tattcaccgg agcggaccaa tttaatcaac
1251 tgctcaaagc tctcgactgg caaacatttt cgtactctat gccagtagag
1301 accatccata cacgcgcggc caattatcaa gtcgctaaaa cgcttcgcat
1351 gtgcagagac ctaccatgcg atgaatatga tcgtgtaaag gatgtcctca
1401 gacagctccc tgacggagtg acgttgtttg aggaaaacga caagcaagat
1451 ccctcaagcc ctgaagccga ggactctgag gacgacactg actccgtcga
1501 cttcaacctt tcccccactc atgaattgcc cccaaacttt gattctctac
1551 acaagggcaa gtccattatc tttgacactg acaacccctc aacttctacg
1601 gcacctgccg tcacttttgc tgtcggtatc aactcctcag cctccacaaa
1651 tatttcattt ggaagcttca cacccgaggc tgaggccacc ccccctcctc
1701 ccatggaaaa gttaccatgg gatctttgga ttcccctact ggaacaacat
1751 ggctttaaag gaaagagtaa gctgtacaag cccacgggtg aactaatctg
1801 ccccataact gaaatcaaaa cagttcccca ctgccccttt cccgataaag
1851 tcccggatgg ctgtgtgctt gcgcttaaat ctattaagcg tttcgccaca
1901 aaaatgacta tgctcagttc tcgagcttcc gcctacactt ctgacattaa
1951 gaataatagg actgggaagc tcctacccgc catgaacatg ccctggaaag
2001 cctctctcgc ctatgtcact caacatggtg atagagaaat tcctggcgtc
2051 gtgatccatg gtgccggtgg ctgtggcaaa tcttatgcca tccaaaaatg
2101 gttgagaagc tgctctgatc cttgtgcagc tactgtggta tgcccaactc
2151 tagaactacg taatgactgg ctcaacaaga tcggaagcta cgaacaaacg
2201 aatattaaaa ctttcgagaa agctttaatt cagccagtca acaacgtagt
2251 tatctttgat gactacacca agctaccccc tgggtacatt gagaccatgg
2301 tgtaccatca ccacaacctc gacctgatca tattaactgg ggatcctatg
2351 cagagtgcct atcatgaaac taacagggat gcctatatct ctttaatacc
2401 tgatgcctct gccattttta gtgagtactg tgagttcaac atcaacgcca
2451 cccaccgtaa tgtggctgaa ctcgcttgcc tcctcggcgt ctattccgaa
2501 cgccaaggca aactcactgt ttccttcagc acagccccac tttctaaagg
2551 taaagtaccc attctggtac cctctagaat gaagcaagag gcttttgctg
2601 atgtcggcaa ccgttgcatg acttacgccg gttgccaggg tctcactgcc
2651 cctaaaatcc aaattctgat agacaaccac actacgttct gctctgaaca
2701 aacattatac acttgtctat cacgagctgt ggaccaaatc cacttcatta
2751 acactggtcc caactcgcag gctttctgga ccaaattgga atcaacgccg
2801 tacctaaaag ctttcctcga taattaccgt gaggaacaaa ctgaacggct
2851 agcatctacc gccccagagc ctgaagtccg tgagccagca gccccaaaaa
2901 cgcatatccc tgtcgaaagt acatctggct tacgtatttc tgcacttgac
2951 ctgccggaaa agcactctcg cgagattttc aacaaggcgc atggcttttc
3001 caatgctatt cagggagatg gcgtagctcc catgttccag catcaacagg
3051 caaaggacga aacccttttc aaggctacca tagacgctag actctctata
3101 acacatcctg atgaaaataa aagagagttt gccatgaaga aagacactgg
3151 ggacgtcctt tttgtcaatt acaaagctat aatgaatcta cctcatgagc
3201 ctgttccttt tgaacctcgt ctctggaaca tctgcaaagc tgaagtgcag
3251 aacacatacc tagccaaacc cattgcaaat cttatcaatg gtaccttaag
3301 gcaatcacct gattttccag ccaataaaat agccttattc ctgaaatcac
3351 aatgggtaaa gaaaattgag aaaattggag ccataccagt taaacctgga
3401 cagactattg catcatttat gcaagagact gttatgctgt atggcaccat
3451 ggcacgctac ctccgtaaga tgcggcaaag atatcaaccc gcacatatat
3501 ttatcaattg tgaaaagact ccggaggact tcaataaatt catacttgaa
3551 cactggtcat acaagcaagt tgcccacact aacgatttta ctgcttttga
3601 ccagtcacaa gatgctgcca tgctccaatt tgaagttatc aaagctaggt
3651 acttcaatat ccccgaggat gttatagagg gatacatcca aattaagctc
3701 actgctgaaa tcttcctcgg gacactctcc atcatgcgcc tatctggtga
3751 agggccaacc ttcgacgcca acactgaatg ctctattgcc tacaacgcca
3801 ccagatacca tattaatgaa gacgtcaccc aagtatacgc cggtgacgac
3851 atggctatgg accatgtgtg ccctgagaag aagagcttca aagctttgga
3901 aaagaaactg aaattgacct caaaacctct ctatccaaag caaaaacctg
3951 gagactgggc cgatttctgc ggctggacta taacgcctta tggcatcatt
4001 aagaatccta agaaacttga tgcatgccta caattgcaca cccaactggg
4051 cgacgccgat aaagtcgcta ggtcatacgc actcgatgcc aaatacgctt
4101 atgatctggg cgaccgcatt catgaggttc tggatgttga tgaaatgacc
4151 agccacttca atgttataag acagttgcac aaactgcatc aacaagatgt
4201 gctggtccca cccgagacta ccgtagccac agcggtaaag tctcaacctg
4251 acatggagga tctgtggctc cgtgcgctta gcttccctga ctggacggac
4301 cgcgcccaac ttttaaaacg gggttaattt tgatggagct agcgtactta
4351 gttagactac tagagcacaa taaattcgag cgcaccaatc tgcccctttc
4401 ctcaccctta gttgtacacg gaatcgctgg cagtggaaaa tccaccatcc
4451 tcacaacttt ccatcaccat tacccggctc accctatctt ctcacacagt
4501 cccacattgc ttgaccctag caaccgcata taccaacagt gcatcactac
4551 tgattcggtg ccagacggtg ctatcgtaga cgagtacaat tacaaagcac
4601 tcgactactc tcgctgtcta gccctctttg gtgatccact ccagcttcca
4651 cattcacttc gaccccacta ctactctagt cgcacccacc gctacggtcc
4701 caagctcacc agcctactca acgacctctt ccacctttct atcacttctc
4751 ttgcccccgt cgacaacctt gattacgctg atccttttgc tgtcgacccc
4801 tctggattta ccattgctga cgaggaagtg tataactttg tctctcagca
4851 ggttcccggc actttgttgc cgctcgatac tgtaggttta gaatattcta
4901 gtgttagctt ttactgcagt gatctccgac gctgcgtcgt actaaggcca
4951 ctcagcacct tcatcgctct cacccgcgcc aagggcaacc tcaccatctt
5001 cgatttcaat gccaggttta gttccaccac ctgaccactc caagtcactt
5051 ttcgtccttg ctattggtat aactgtggtc tccgcattat tcgtgctaaa
5101 gtcccacact tttccaattg caggcgacaa tattcaccgc ttcccctccg
5151 gcggccaata taaagacggt actaagcaga taaactactg tccacctact
5201 catgctaggt acccgaaata tcctgactac aagtggcttg cccgtaccgc
5251 cgccattgtc atccctctct gcctatatat ttcctaccat cctggcaata
5301 atattcgccg tatttgccct tgttgcaata catatcacca cccctgagcc
5351 cttctgtacc atacacatag acggggcgtc tattactatc actaactgcc
5401 ccgatcctgc agctatatta gataaagtag ccataggccc ctggctaggg
5451 ttaagttacc acaataattt gaaataatca tgggagagtc cactccaact
5501 ccagctgcca cttactccgc tgccgacccc acttctgcac ccaagttggc
5551 cgacctggct gcccttaagt actcacctgt cacctcctcc atcgccaccc
5601 ccgaagaaat caaggccata acccaattgt gggttaacaa ccttggcctc
5651 cccgccgaca cagtaggtac cgcggccatt gacctggccc gcgcctacgc
5701 tgacgtcggg gcgtccaaga gtgctaccct gctcggtttc tgccctacga
5751 aacctgatgt ccgctgcgcc gctcttgccg cgcagatctt cgtggccaac
5801 gtcacccccc gccagttttg cgcttactac gcaaaagtgg tgtggaatct
5851 gatgctggcc actaacgatc cgcccgccaa ctgggccaag gctggtttcc
5901 aggaggatac ccgatttgcc gcctttgact tcttcgatgc cgtcgattcc
5951 actgccgcgc tggagcccgc tgaatggcag cgccgcccta ctgaccgtga
6001 acgtgctgcg cactcgatcg ggaagtacgg cgcccttgcc cgtcagcgta
6051 tccaaaacgg caacctcatc accaacattg ccgaggtcac caagggccat
6101 cttggctcca ccaacactct ctatgctctg cctgcacccc ctactgaata
6151 acgccaaact taataaggcg tgtggttttc taaagtttgt ttccactact
6201 ggcataatac gtttagccag ataattt