Sequence of DPV Blackcurrant reversion virus
Blackcurrant reversion virus RNA2 polyprotein mRNA, complete cds.
ACC No: AF020051
Dated: 2004-06-19 | Length: 6405 | CRC: -541558791
!!NA_SEQUENCE 1.0
ID AF020051 standard; mRNA; VRL; 6405 BP.
XX
AC AF020051; AF112118;
XX
SV AF020051.3
XX
DT 06-JAN-1999 (Rel. 58, Created)
DT 19-JUN-2004 (Rel. 80, Last updated, Version 6)
XX
DE Blackcurrant reversion virus RNA2 polyprotein mRNA, complete cds.
XX
KW .
XX
OS Blackcurrant reversion virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Comoviridae;
OC Nepovirus; Subgroup C.
XX
RN [1]
RP 3296-6405
RX MEDLINE; 98278327.
RX PUBMED; 9617765.
RA Latvala S., Susi P., Kalkkinen N., Lehto K.;
RT "Characterization of the coat protein gene of mite-transmitted blackcurrant
RT reversion associated nepovirus";
RL Virus Res. 53(1):1-11(1998).
XX
RN [2]
RP 1-6405
RX MEDLINE; 20033820.
RX PUBMED; 10564755.
RA Latvala-Kilby S., Lehto K.;
RT "The complete nucleotide sequence of RNA2 of blackcurrant reversion
RT nepovirus";
RL Virus Res. 65(1):87-92(1999).
XX
RN [3]
RP 1-6405
RA Latvala-Kilby S., Lehto K.;
RT ;
RL Submitted (19-AUG-1997) to the EMBL/GenBank/DDBJ databases.
RL Laboratory of Plant Physiology and Molecular Biology, Department of
RL Biology, University of Turku, Turku 20014, Finland
XX
RN [4]
RC Sequence update by submitter
RP 1-6405
RA Latvala-Kilby S., Lehto K.;
RT ;
RL Submitted (09-DEC-1999) to the EMBL/GenBank/DDBJ databases.
RL Laboratory of Plant Physiology and Molecular Biology, Department of
RL Biology, University of Turku, Turku 20014, Finland
XX
RN [5]
RC Sequence update by submitter
RP 1-6405
RA Latvala-Kilby S., Lehto K.;
RT ;
RL Submitted (30-OCT-2000) to the EMBL/GenBank/DDBJ databases.
RL Laboratory of Plant Physiology and Molecular Biology, Department of
RL Biology, University of Turku, Turku 20014, Finland
XX
CC On Oct 30, 2000 this sequence version replaced gi:6540581.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6405
FT /db_xref="taxon:65743"
FT /mol_type="mRNA"
FT /organism="Blackcurrant reversion virus"
FT /specific_host="Ribes nigrum L."
FT /lab_host="Chenopodium quinoa"
FT /segment="RNA2"
FT CDS 162. .5042
FT /codon_start=1
FT /db_xref="GOA:Q9YK98"
FT /db_xref="UniProt/TrEMBL:Q9YK98"
FT /product="polyprotein"
FT /protein_id="AAD09329.2"
FT /translation="MSESGNTTSMPGCGRMCALRSTWSKRAFLVACKDGALTSDGRCPQ
FT YGCGALVSITKGVQQPKKTASAKVVKCLCWVQPARWCEKHSKGPASPNGSVTTKRSNSA
FT RAAPAPLPYKKQTCDVVVTVGPLELVYPALVSEELPTPVAATPTKVEEVPIPELPLWLA
FT PAWMVEQPYAATPEVLCLTQREEFALLKKRLTRKGKLLQRRATHARFEARAALARVRAA
FT TQRKVEEVTALVIKGRRILAAHQLLRELEEVAPLSQAQEQLVASSCAAAAARQEECASF
FT LRRAKAWRKSISATPPVAFATAVASKVVSATMPWAHLGLSLGGLLAVPTLDGTLGAKQW
FT NAKTIATWVLKPVVSCVQSVHAKVRDWLHSQPEVGVTNTKVPLVLPEVCLGVLSPPSLS
FT EEIVDNPQETSQSGIWHPEMGVRNIYVFHDDSWETSPEEDENYTYTFSRQCGIPYLLVE
FT GRGAEERKNTILGWDFSLHNDGEFEFLPSPEEGYTKELVTPVALEEEDKYSTASSCGFF
FT SLDDVSSAITIQCPGLLSADADVHFFDGPGYRCSSRPRDFRPPVVRGCDYESRVKASIQ
FT RKIENPLQERFITVLREKRKKNKKKEFHSFSACFAFKRKQIQWPPTPNEMVNEWEEYCI
FT AQAWLPFEVVVTDEIEDVTPLYPGGRDYNCNSQLLFPLAPLSTVYCDDSCFHPNDGWTT
FT DGNGKHFRLSPQFVLPDVPIPIVHRVTRQLPQFLYDLGIGDLTCNSGYQAENLQEEIQE
FT RMEDRSEEKPVPSLDTLISKLSKRSTKVKGAGENRYADRHSLTEKAIFHQPGALSRMRS
FT GKEKTIVAANHNSDQISVRMAECGKPVFTPLPRMSDEMLRKFLEKGLGSTSTVALDIGI
FT QSHIPQGMPTVAFVNVMDTRIEDPLYSSLCGSYIDLGRDRAKTLCLPLVNFPMSKLAED
FT VDDVLNGLMLCTHFQDSTKFGVGKPAFQYGTLEFQEFKPSAYSDFSRVRDNWDAIAKQQ
FT NTPNDRILAGFSVLGAVSQAYNQALPVFKSVELVAPPKRKPVVATFQNPTTLGRSNTTR
FT SFRMPTMDLPRSTGRDAPIPIVHRRNNNDVHGFDEATPARFSTCDSGLVADTTLAFAKM
FT YQCKKDAKAGHVLATIDIQECVFEDNRRVALDWLAHGLASFKYDLQLTVDSNPFVGVTL
FT GITVDAFDRLLPQISDEVIAVPLAFQLPTYLFPISKKGTFTQTIDFAAIAGYNFFPHVA
FT AFGRPKIIVYIVSDNDLPASDTWMCLVELHMTRLESSTLACSPTLVLPQAFGGDLPLDL
FT WRGPYTFPLGGGTKRLSTSLDIGTSTTTVSGWRTVSFPAAYALFLQGHGGSLVGEVVHT
FT GSAAVSCALHLCISFGGAPPTLEEALVFPGFRLPSGEGKFHIKVQTPYGRLSTLTPDCA
FT LYVYLAGGPIAVAPMSVPYQFCIHLERLVDDGAPPRTIGLIREFNWATINNFKSDDITF
FT AIPARLSDLVLTCGDVTMSTNPLALLIGSCGFFRGNLTVVLEWATFLKAGDKEGTVQLT
FT TCRGMINNVKGVRNAIQKKVVNLSLVGSVSRYLNVGDFTGFAQSGGQVGYDEIFLEFST
FT NKAKQIRYLNINVELDENFELYGRTIIPLKNTAPAFASTSASAPNES"
FT mat_peptide 3441. .5039
FT /product="coat protein"
XX
SQ Sequence 6405 BP; 1562 A; 1382 C; 1555 G; 1906 T; 0 other;
AF020051 Length: 6405 June 22, 2004 12:21 Type: N Check: 1332 ..
1 ttttcaaaag ttctctccta gaacttttcc cacctctttc ttgtcacttt
51 tgctagtttc tctctgtttt tctccattct tactagttgg tgttgttcgg
101 ttgtttggct tccctgctct ttttccttcc ttccttcgct tttgttttgg
151 tttgctttac catgagtgag agtggtaaca ccacatccat gcctgggtgt
201 ggtagaatgt gtgctctgcg gagcacttgg tcaaaaagag ctttccttgt
251 tgcctgcaag gatggcgcac ttaccagtga tggtaggtgt ccgcagtatg
301 gttgtggggc tcttgtctcc attaccaagg gtgttcagca gcccaagaaa
351 accgcttccg caaaagtggt aaaatgcttg tgctgggttc aaccagcacg
401 ctggtgcgaa aagcactcga aggggcctgc aagtcccaat ggttctgtga
451 ccaccaaaag gtcaaactct gcgcgtgcag cgccagcccc gcttccttac
501 aagaagcaaa cttgtgacgt ggttgtcaca gttgggccac tagagttggt
551 ttatccagct ctagtttctg aggagctacc cactcctgtc gctgccaccc
601 cgactaaggt ggaagaggtt cccattccgg agctgccctt gtggttggcc
651 ccagcatgga tggtggagca gccctatgct gctaccccag aggtcctctg
701 cctcacccaa cgggaagagt ttgcgctact taaaaagcgc cttacccgca
751 agggtaagct tcttcaacgg cgtgccacgc acgcgcgttt tgaggctcgg
801 gctgcattag cccgtgtccg tgctgccacc caacgtaagg tggaagaggt
851 taccgccctt gtcatcaagg gcaggcggat tttggccgcc caccaactac
901 tccgtgagtt ggaagaggta gcccctctct ctcaagccca agaacaactt
951 gtggcttctt cttgtgctgc agctgcagca cgccaggagg aatgcgctag
1001 cttccttcgc cgtgccaaag catggcggaa aagcattagt gcaactcctc
1051 ctgttgcctt tgccacagct gtggcttcta aagtggtttc agccactatg
1101 ccttgggccc atcttgggct ctctcttggg ggacttttgg cagtccctac
1151 tttggatggc accctgggtg ctaagcagtg gaatgctaaa accattgcta
1201 catgggtttt gaagcccgtt gtttcttgtg tccaatctgt gcacgctaaa
1251 gtgcgcgact ggttacatag ccaaccagaa gtgggtgtta caaatactaa
1301 ggttcctctg gtgctaccag aggtctgctt gggggtctta tcgcctcctt
1351 ctttatctga agagatagtg gacaatccac aggaaactag ccagagtgga
1401 atctggcacc cagagatggg tgtaagaaat atctacgttt ttcatgatga
1451 ttcgtgggaa actagtccag aagaggacga aaactatacc tacaccttta
1501 gtcgacaatg tggtattcca tatttgttag ttgaaggacg gggcgctgaa
1551 gagcgtaaga atactattct cggatgggat ttctctctcc ataacgatgg
1601 ggagtttgaa ttccttccta gtcctgaaga gggttatact aaggaactgg
1651 ttacaccagt cgctcttgaa gaggaggata aatactccac agcgagcagt
1701 tgtggattct tctccctgga cgatgtttca tctgcgataa ccatacaatg
1751 tccagggctt ttgagtgccg atgctgatgt tcattttttt gatggaccag
1801 gctatcgatg ctcttcgcga ccacgtgatt ttcgtccacc cgtggtgaga
1851 ggctgcgact acgaaagtag agttaaagct tctatccaaa ggaaaatcga
1901 gaatcccctg caagaacgtt ttattactgt attgcgcgag aagaggaaga
1951 aaaataaaaa gaaagagttt cattccttct ccgcctgctt cgcttttaag
2001 aggaagcaaa tacagtggcc tcctacacct aatgagatgg ttaatgaatg
2051 ggaggaatat tgcattgcac aggcgtggtt gccttttgaa gttgtagtga
2101 cagacgaaat tgaagatgtc actcctttgt atcccggtgg gagggattac
2151 aattgtaaca gtcagttgct ttttccgcta gctccattgt cgacggtata
2201 ttgtgatgat tcgtgtttcc atcctaacga cgggtggacg actgatggaa
2251 atggcaaaca tttccgactt agtccacaat tcgttttacc cgatgtccct
2301 atacctatag tgcaccgcgt tacacgccag ttaccgcagt ttttgtatga
2351 tttgggtatc ggtgatctta cctgcaattc gggctatcaa gctgagaatt
2401 tgcaagaaga gatccaagaa cggatggaag atcgtagtga ggagaaacca
2451 gtgccaagct tagatactct tattagtaag ctttcgaaga ggagtaccaa
2501 agtaaagggc gcgggtgaaa atcgctatgc tgatcgtcac agtctaacag
2551 aaaaggctat tttccaccaa cccggtgcgc tgagccgcat gcgctcgggt
2601 aaagaaaaaa caattgtggc agcgaaccat aactctgatc agatttcagt
2651 gcgtatggcg gaatgtggta aacctgtgtt tacaccacta ccgcgaatgt
2701 ctgatgaaat gctgagaaaa tttctagaga aagggttagg ttctacttct
2751 acagtagcat tggatatcgg tatacaaagc catattccac aaggaatgcc
2801 tactgttgcg tttgttaatg ttatggacac acgtattgag gatcctttgt
2851 attcttcatt atgtgggtcc tacattgatc ttggaaggga tcgggctaaa
2901 acgctttgct tacctctcgt caatttccca atgagcaaat tagcagagga
2951 tgttgatgat gtgttaaatg gcttgatgct gtgtacacat tttcaagatt
3001 cgactaagtt tggggttggc aaacctgctt tccagtatgg cacattagaa
3051 tttcaagaat tcaaaccttc tgcctactcg gatttttccc gtgtgaggga
3101 taattgggat gcgattgcta aacaacagaa tacacctaat gatcgcattc
3151 tagcaggatt ttctgttctt ggtgctgttt cacaagcata taatcaagct
3201 ctaccagtgt tcaagtctgt ggaacttgtg gcaccgccca agagaaagcc
3251 agtggtggct acttttcaga atccaaccac attgggtagg agtaacacaa
3301 ctcgtagctt ccgcatgcct actatggatt tgccacgaag tacggggcgt
3351 gatgctccaa ttcccatagt gcatcggcga aataacaatg atgtacatgg
3401 atttgatgaa gctacaccag ctcgtttttc aacttgtgat tctggattag
3451 tggccgacac aacgctcgcc tttgcgaaaa tgtatcaatg caaaaaggat
3501 gctaaggctg ggcacgtttt ggccactatt gatattcagg aatgtgtctt
3551 tgaagacaat agacgagtgg ctctggattg gctagcacac ggtcttgcta
3601 gcttcaaata tgatctacaa ttgaccgtag attcgaaccc tttcgttggg
3651 gtgacattgg ggattacagt agatgctttc gatcggcttc taccccagat
3701 ttctgatgag gtgattgcag tgccattggc atttcaatta cctacttatt
3751 tgttcccgat ttcgaagaag gggactttca cccaaactat tgattttgcg
3801 gcaatagctg ggtataattt ttttccgcat gtagcagctt ttggtcggcc
3851 aaaaattatc gtgtatatag tgtccgataa tgatttgcca gcgagtgaca
3901 cgtggatgtg tctcgtcgag ttgcatatga cgagactcga atcatctacg
3951 ttagcttgca gtcccaccct cgttttgcct caagcatttg ggggtgattt
4001 accattagat ttgtggcgtg gcccctatac cttcccatta ggggggggta
4051 ccaagcgttt atccacttcg ttggatattg ggacgtcgac aacgaccgtt
4101 agtgggtggc gtactgtttc ttttcccgct gcttatgctc ttttcttaca
4151 agggcatggt ggtagtttag ttggtgaggt ggtgcatact ggttcggccg
4201 ctgtgtcatg tgcacttcac ctttgtatat cctttggcgg tgcccctcct
4251 actttggagg aagcactcgt ctttcctggt tttcgtttac cttccggtga
4301 gggcaaattt catattaagg tacaaacgcc atatgggcga ttaagcactt
4351 taactccaga ctgtgcctta tatgtttatt tagccggagg acctattgct
4401 gttgcaccaa tgtcggtgcc ctatcaattc tgcatccatt tggagagatt
4451 ggtagatgat ggagccccac ctcgaacgat tggtttaatt cgagagttta
4501 attgggctac cataaataat tttaagagtg acgatataac gtttgccatt
4551 cctgcgcgtt tgtctgatct tgtgcttact tgtggtgatg tcactatgag
4601 tactaaccct cttgccttat taattggtag ttgtggtttc ttccggggca
4651 atctcacagt tgtcttggaa tgggccacct tcctaaaggc aggagataaa
4701 gagggcacag ttcagttgac tacatgtcgt ggcatgatta ataatgtcaa
4751 gggtgtgcga aatgccatcc agaaaaaagt cgtcaactta tctctcgtcg
4801 gatctgtctc ccgctacctc aatgttgggg atttcaccgg ttttgcacaa
4851 tctggtgggc aagtggggta tgatgagatt tttctcgagt tcagcacgaa
4901 taaagctaag caaattcgtt atttaaatat aaatgttgaa cttgatgaaa
4951 atttcgagct gtatggtcgt acgatcatac ctcttaagaa tacagctccc
5001 gctttcgcaa gtacatctgc tagtgctccc aacgaaagtt gatagcgatg
5051 tgcacgttta ggagataaat agctagtatc tttctactcg gattcccctc
5101 tgtcgtcata gaggggtttc aagggatgtc atcatcagcg ttggctatgg
5151 ccacgatgtg aatcatggag taacgcacca tgagtccccc gataattcgg
5201 tcccaagaga ctacacttgg gttgaaaatg atggtaaacc atccgtatgg
5251 gtctatgctc atatgttaag agttgtctta ctgtatatgg cttctacata
5301 aggtcggtac ccctgaaata gggatcctgt tcgcgtgcgt ggttgtagga
5351 gtgctaagta tagttgcaac ataaatatga cttgggagac aaagtctcat
5401 ccaccttgga accgcacagg gatataactc aaagcggaat ggtagtaaac
5451 tacttgccct atcagtaggg atgggaacgc tcattattag caaaccctta
5501 ccctggacat taggtgcttc agcaatatga ggcgaaagac tagggagaaa
5551 gttcctatgg acgtgtaatt cgtccactcg agatgggagt catgccatcg
5601 tgttatctta ttttcttgta ttgtatttca atttcaaaga aagttgctgg
5651 atctaaacca gacccaggtg agtggaacct tctgcgtcca ctcggtttgg
5701 tattttacga ttaaaatacc caggtctact gcttccgagc ctgattaaaa
5751 tcttaaagcg gccatcgttc agtacttgct ggcatggtga catgagtgat
5801 gatgctttat gaatcatcaa atagtttctt tgtttctatt tctgggaaat
5851 ccttttggag agtgcccatg agaataatga agcgtttagt acacgatata
5901 gtactatctc tgttccagga gattgcgccg gaaatatagt cgatcatttt
5951 atgatcaagg tatttctgga tgggctcgtt gcgaagagtt ttcgctcaag
6001 gttcacatga ctgtaaattg taagtgtact caagatgttt ctagtctagg
6051 cagctagatg cattggatga ggtcccgatt gatacggggg gataatcaat
6101 cccagcttac ggtgtgtgcc gacttatatg gaagtgtcca tatcgcattt
6151 tgcttgtttt tagacataaa taagcactct ttactgcgtg taatacgctg
6201 gtgtctcatt atatactagc gttgcagcgc taggactacc taagacaacc
6251 gtattatacg tttgctttat ttatttttgc tactcctgtt tagcaggtcg
6301 tgccttcagt aagcacacaa aaatattttc catttttagg ttttggttaa
6351 gagtcatttt attgagcact tttcttttag agaatagagt ctgaaatgtc
6401 ctttc