Sequence of DPV Cereal yellow dwarf virus-RPV
Barley yellow dwarf virus - PAV Australian isolate RPVa RNA polymerase (Pol) gene, partial cds; and coat protein and putative movement protein genes, complete cds.
ACC No: AF020090
Dated: 2006-02-27 | Length: 1500 | CRC: 23052491
ID AF020090 standard; genomic RNA; VRL; 1500 BP.
XX
AC AF020090;
XX
SV AF020090.1
XX
DT 29-SEP-1997 (Rel. 52, Created)
DT 27-FEB-2006 (Rel. 86, Last updated, Version 2)
XX
DE Barley yellow dwarf virus - PAV Australian isolate RPVa RNA polymerase
DE (Pol) gene, partial cds; and coat protein and putative movement protein
DE genes, complete cds.
XX
KW .
XX
OS Barley yellow dwarf virus - PAV
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
XX
RN [1]
RP 1-1500
RA Waterhouse P.M., Gerlach W.L., Miller W.A.;
RT "Serotype specific and general luteovirus probes from cloned cDNA sequences
RT of barley yellow dwarf virus";
RL J. Gen. Virol. 67:1273-1281(1986).
XX
RN [2]
RP 1-1500
RA Wang M.-B., Cheng Z.-M., Keese P., Graham M., Larkin P., Waterhouse P.;
RT "Comparison of the coat protein and RNA polymerase genes of an Australian,
RT a Chinese, and an American isolate of barley yellow dwarf virus transmitted
RT by Rhopalosiphum padi";
RL Unpublished.
XX
RN [3]
RP 1-1500
RA Wang M.-B., Waterhouse P.M.;
RT ;
RL Submitted (20-AUG-1997) to the EMBL/GenBank/DDBJ databases.
RL Division of Plant Industry, CSIRO, Clunies Ross Street, Canberra, ACT 2601,
RL Australia
XX
FH Key Location/Qualifiers
FH
FT source 1. .1500
FT /db_xref="taxon:12040"
FT /mol_type="genomic RNA"
FT /note="The virus was isolated from a mixture of BYDV-PAV,
FT BYDV-RPV and an associated satellite RNA."
FT /organism="Barley yellow dwarf virus - PAV"
FT /isolate="Australian isolate RPVa"
FT gene <1. .699
FT /gene="Pol"
FT CDS <1. .699
FT /codon_start=1
FT /db_xref="GOA:O37355"
FT /db_xref="InterPro:IPR001795"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="UniProtKB/TrEMBL:O37355"
FT /gene="Pol"
FT /function="RNA dependent RNA polymerase"
FT /product="RNA polymerase"
FT /protein_id="AAB70924.1"
FT /translation="TEDQVESFINVLAGTAGARPDEICDKWRDLLVPTDCSGFDWSVSD
FT WMLADDMEVRNPLTIDCNELTRHLRAVWLQGISNSVLCLSDGTMLSQVKPGVQKSGSYN
FT TSSTNSRIRVMAAYHCGASWAIAMGDDALEAPDTDLNKYKDLGFKVEVSKELEFCSHIF
FT KSPTLAIPVNANKILYRLIHGYNPECGNAEVIVNYLNAASSVLHELRHDQELCALLHMW
FT LVSGITTKDN"
FT CDS 886. .1500
FT /codon_start=1
FT /db_xref="GOA:O37356"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:O37356"
FT /note="22kDa"
FT /product="coat protein"
FT /protein_id="AAB70925.1"
FT /translation="MSTVVLRSNGNGSRRRRQRVARRRPAVRTQPVVVVASNGPARRRR
FT RRRPAGPRRGRTPGLGGASRGETFVFAKDSLAGNSSGSITFGPSLSDYPAFQNGVLKAY
FT HEYKITNCILQFISEASSTAAGSISYELDPHCKASSLGSTINKFTITKTGARSFPAKMI
FT NGLEWHPSDEDQFRILYKGNGASSVAGSFKITLRVQLQNPK"
FT CDS 911. .1372
FT /codon_start=1
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:O37357"
FT /note="17kDa"
FT /product="putative movement protein"
FT /protein_id="AAB70926.1"
FT /translation="MAMVRADADRESLGEGLLSERSQWLWSLPTAQPGAEDAEDQLVLG
FT EEELQDSEEQAVGRHLFSQRTHSLATPLEVSPSGRLYQTIRHSRMEYSRPTMNIRSQIV
FT SYSSSARPLPQQPVPSLMSWTPIAKHLHLGQQSTSSRSPKLVRAASQRR"
XX
SQ Sequence 1500 BP; 377 A; 380 C; 372 G; 371 T; 0 other;
af020090 Length: 1500 27-FEB-2006 Type: N Check: 6459 ..
1 accgaggacc aagtcgaaag ttttatcaat gtcctcgcgg gtaccgctgg
51 tgcccgtcct gatgagatct gcgacaagtg gcgcgatctc ttggttccaa
101 cggactgctc tggtttcgac tggtcagtct ccgattggat gctcgcagac
151 gatatggagg taagaaatcc tcttaccatc gactgcaatg agctcactag
201 acacctgcgt gctgtctggt tgcaaggcat atcaaactct gttttatgcc
251 tttcggatgg aaccatgcta tcccaggtta agcccggggt ccaaaagagt
301 ggatcgtaca atacgtcatc tacgaactct aggatccggg ttatggctgc
351 ctatcattgc ggcgcctcct gggcgatagc gatgggggat gatgccctcg
401 aagcgccaga tacagatttg aacaagtaca aagatctggg cttcaaagtc
451 gaggtaagca aggagctgga attctgttca cacatcttca agtctcctac
501 cctcgccatt ccggtcaatg ccaacaagat attgtaccgc ttgatccacg
551 ggtacaatcc ggaatgtgga aacgctgagg tgattgtcaa ttacctcaat
601 gcagccagct cagtgctgca tgagctccgt catgatcagg agctttgcgc
651 gttattgcat atgtggttag tatctggcat aaccacaaag gataactgag
701 cagcaaaact agccgagcat acgtaagttg caagcgtcgg gagtttagtc
751 ttacacttaa gcccaagatt gattacacat ttttagcggg attcgccaca
801 ggttttatat cctcaatccc catttcagtt cttggtgttt atttcgtcta
851 cctaaggatc tcgacccata ttcgtgagat tgttaatgag tacggtcgtc
901 cttagatcca atggcaatgg ttcgcgcaga cgcagacaga gagtcgctcg
951 gcgaaggcct gctgtcagaa cgcagccagt ggttgtggtc gcttccaacg
1001 gcccagccag gcgcagaaga cgccgaagac cagctggtcc tcggcgagga
1051 agaactccag gactcggagg agcaagccgt ggggagacat ttgttttcgc
1101 aaaggactca ctcgctggca actcctctgg aagtatcacc ttcgggccgt
1151 ctttatcaga ctatccggca ttccagaatg gagtactcaa ggcctaccat
1201 gaatataaga tcacaaattg tatcttacag ttcatcagcg aggcctcttc
1251 cacagcagcc ggttccatct cttatgagtt ggacccccat tgcaaagcat
1301 cttcacttgg gtcaacaatc aacaagttca cgatcaccaa aactggtgcg
1351 cgcagcttcc cagcgaagat gatcaacggg ttagaatggc acccctcaga
1401 tgaggatcag ttccgaattc tttataaagg gaatggtgcc tcctctgtag
1451 ctggttcttt caagattact ctcagagttc agctgcagaa cccaaaatag