Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus-[Dominican Republic], infectious clone, complete genome.
ACC No: AF024715
Dated: 2005-04-15 | Length: 2781 | CRC: 1506308950
!!NA_SEQUENCE 1.0
ID AF024715 standard; circular genomic DNA; VRL; 2781 BP.
XX
AC AF024715;
XX
SV AF024715.2
XX
DT 01-NOV-1997 (Rel. 53, Created)
DT 15-APR-2005 (Rel. 83, Last updated, Version 5)
XX
DE Tomato yellow leaf curl virus-[Dominican Republic], infectious clone,
DE complete genome.
XX
KW .
XX
OS Tomato yellow leaf curl virus-[Dominican Republic]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2781
RA Nakhla M.K., Maxwell D.P., Martinez R.T., Carvalho M.G., Gilbertson R.L.;
RT "Widespread Occurrence of the Eastern Mediterranean Strain of Tomato Yellow
RT Leaf Curl Geminivirus in Tomatoes in the Dominican Republic";
RL Plant Dis. 78:926-926(1994).
XX
RN [2]
RP 1-2781
RA Salati R., Nakhla M.K., Maxwell D.P., Carvalho M.G., Hou Y.M.,
RA Gilbertson R.L.;
RT "Complete nucleotide sequence of an infectious clone of tomato yellow leaf
RT curl geminivirus from the Dominican Republic";
RL Phytopathology 87:S84-S84(1997).
XX
RN [3]
RP 1-2781
RA Salati R., Nakhla M.K., Maxwell D.P., Carvalho M.G., Hou Y.M.,
RA Gilbertson R.L.;
RT ;
RL Submitted (14-SEP-1997) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, UCDavis, Department of Plant Pathology, Davis, CA 95616,
RL USA
XX
RN [4]
RC Sequence update by submitter
RP 1-2781
RA Salati R., Nakhla M.K., Maxwell D.P., Carvalho M.G., Hou Y.M.,
RA Gilbertson R.L.;
RT ;
RL Submitted (03-SEP-1999) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, UCDavis, Department of Plant Pathology, Davis, CA 95616,
RL USA
XX
CC On Sep 3, 1999 this sequence version replaced gi:2558948.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2781
FT /db_xref="taxon:220941"
FT /mol_type="genomic DNA"
FT /note="Whitefly transmitted; infectious clone"
FT /organism="Tomato yellow leaf curl virus-[Dominican
FT Republic]"
FT /isolate="Dominican Republic isolate"
FT CDS 148. .498
FT /codon_start=1
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProt/TrEMBL:Q77YV0"
FT /note="pre-coat protein"
FT /gene="V2"
FT /product="V2"
FT /protein_id="AAD09394.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL
FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV
FT PKAQNIQNVSKP"
FT CDS 308. .1084
FT /codon_start=1
FT /db_xref="GOA:O38541"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProt/TrEMBL:O38541"
FT /note="coat protein"
FT /gene="V1"
FT /product="V1"
FT /protein_id="AAD09393.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSNRAAVPIVQGTNKRRSW
FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGVVRCVSDVTRGSGITH
FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT CDS complement(1081. .1485)
FT /codon_start=1
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProt/TrEMBL:O38542"
FT /gene="C3"
FT /product="C3"
FT /protein_id="AAD09397.1"
FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITDHSQRPFLMNHDI
FT ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPQTGRFLRVSRYEVLKYLDSLGVISINN
FT VIRAVDHVLYDVLENTINVTETHDIKYKFY"
FT CDS complement(1226. .1633)
FT /codon_start=1
FT /db_xref="GOA:O38543"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProt/TrEMBL:O38543"
FT /gene="C2"
FT /product="C2"
FT /protein_id="AAD09396.1"
FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL
FT NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRPQPEAISNEPRHHFHSDKIQPQ
FT HQEGNGDSQMFSQLPNLDDITASDWSFLKSI"
FT CDS complement(1542. .2615)
FT /codon_start=1
FT /db_xref="GOA:O38544"
FT /db_xref="HSSP:1L5I"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProt/TrEMBL:O38544"
FT /note="replication associated protein"
FT /gene="C1"
FT /product="C1"
FT /protein_id="AAD09395.1"
FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNIETPTNKKYIKVC
FT REFHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK
FT DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL
FT SSNLDRIFNPPLEVYVSPFLSSSFNQVPDELEEWVAENVVYSAARPWRPISIVIEGDSR
FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQMDWQS
FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFA
FT SINQGPTQDSQEETNKA"
FT CDS complement(2171. .2464)
FT /codon_start=1
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProt/TrEMBL:O38545"
FT /gene="C4"
FT /product="C4"
FT /protein_id="AAD09398.1"
FT /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTGQHISIQTFRQLRAQ
FT QMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAVNPRPSIY"
XX
SQ Sequence 2781 BP; 757 A; 534 C; 605 G; 885 T; 0 other;
AF024715 Length: 2781 April 19, 2005 08:52 Type: N Check: 4401 ..
1 accggatggc cgcgcctttt ccttttatgt ggtccccacg agggttacac
51 agacgtcact gtcaaccaat caaattgcat cctcaaacgt tagataagtg
101 ttcatttgtc tttatatact tggtccccaa gtattttgtc ttgcaatatg
151 tgggacccac ttctaaatga atttcctgaa tctgttcacg gatttcgttg
201 tatgttagct attaaatatt tgcagtccgt tgaggaaact tacgagccca
251 atacattggg ccacgattta attagggatc ttatatctgt tgtaagggcc
301 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgtct
351 cgaaggttcg ccgaaggctg aacttcgaca gcccatacag caaccgtgct
401 gctgtcccca ttgtccaagg cacaaacaag cgacgatcat ggacgtacag
451 gcccatgtac cgaaagccca gaatatacag aatgtatcga agccctgatg
501 ttccccgtgg atgtgaaggc ccatgtaaag tccagtctta tgagcagcgg
551 gatgatatta agcacactgg tgttgttcgt tgtgttagtg atgttactcg
601 tggatctgga attactcaca gagtcggtaa gaggttctgt gttaaatcga
651 tatatttttt aggtaaagtc tggatggatg aaaatatcaa gaagcagaat
701 cacactaatc aggtcatgtt ctttttggtc cgtgatagaa ggccctatgg
751 aagcagtcca atggattttg gacaggtttt taatatgttc gataatgagc
801 ccagtaccgc aactgtgaag aatgatttgc gtgataggtt tcaagtgatg
851 aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca
901 ggcattagtt aagagatttt ttaaaattaa cagtcatgta acttataatc
951 atcaggaggc agccaagtac gagaaccata ctgaaaacgc cttgttattg
1001 tatatggcat gtacgcatgc ctctaatcca gtgtatgcaa ctatgaaaat
1051 acgcatctat ttctatgatt caatatcaaa ttaataaaat ttatatttta
1101 tatcatgagt ttctgttaca tttattgtgt tttcaagtac atcatacaat
1151 acatgatcca ctgctctgat tacattgtta atggaaatta caccaagact
1201 atctaaatac ttaagaactt catatctaga tactcttaag aaacgaccag
1251 tctgaggctg taatgtcgtc caaattcgga agttgagaaa acatttgtga
1301 atccccatta ccttcctgat gttgtggttg aatcttatct gaatggaaat
1351 gatgtcgtgg ttcattagaa atggcctctg gctgtggtct gttatcttga
1401 aatagagggg attgtttatc tcccagataa aaacgccatt ctctgcctga
1451 ggagcagtga tgagttcccc tgtgcgtgaa tccatgatta ttgcagttga
1501 ggtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt
1551 attggtttct tcttggctat cttgtgttgg accttgattg atacttgcga
1601 acagtggctc gtagagggtg acgaaggttg cattcttgag agcccaattt
1651 ttcaaggata tgtttttttc ttcgtctaga tattccctat atgaggaggt
1701 aggtcctgga ttgcagagga agatagtggg aattccccct ttaatttgaa
1751 tgggcttccc gtactttgtg ttgctttgcc agtccatctg ggcccccatg
1801 aattccttga agtgctttaa atagtgcggg tctacgtcat caatgacgtt
1851 gtaccacgca tcattactgt acacctttgg gcttaggtct agatgtccac
1901 ataaataatt atgtgggcct aaagacctgg cccacattgt tttgcctgtt
1951 ctgctatcac cctcaatgac aatacttatg ggtctccatg gccgcgcagc
2001 ggaatacacg acattctcgg cgacccactc ttcaagttca tctggaactt
2051 gattaaaaga agaagaaaga aatggagaaa cataaacttc taaaggagga
2101 ttaaaaatcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata
2151 gtcctttggg gccttttctt ttaatatatt gagggcctcg gatttactgc
2201 ctgaattgag tgcttcggca tatgcgtcgt tggcagattg ctgacctcct
2251 ctagctgatc tgccatcgat ttggaaaact ccaaaatcaa tgaagtctcc
2301 gtctttctcc acgtaggtct tgacatctgt tgagctctta gctgcctgaa
2351 tgtttggatg gaaatgtgct gacctgtttg gggataccag gtcgaagaac
2401 cgttggttct tacattggta tttgccttcg aattggataa gcacatggag
2451 atgtggttcc ccattctcgt ggaattctct gcaaactttg atgtattttt
2501 tatttgttgg ggtttctatg ttttttaatt gggaaagtgc ttcctcttta
2551 gagagagaac aattgggata tgttaggaaa taatttttgg catatatttt
2601 aaataaacga ggcatgttga aatgaatcgg tgtccctcaa agctctatgg
2651 caatcggtgt atcggtgtct tacttatacc tggacaccta atggctattt
2701 ggtaatttca taaatgttca ttgcaattca aaattcaaaa ttcaaaaatc
2751 aaatcattaa agcggtcatc cgtataatat t