Sequence of DPV Turnip yellow mosaic virus
Turnip yellow mosaic Blue Lake isolate, complete genome.
ACC No: AF035403
Dated: 2005-04-15 | Length: 6319 | CRC: 1623447076
!!NA_SEQUENCE 1.0
ID AF035403 standard; genomic RNA; VRL; 6319 BP.
XX
AC AF035403;
XX
SV AF035403.1
XX
DT 06-JAN-1998 (Rel. 54, Created)
DT 15-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE Turnip yellow mosaic Blue Lake isolate, complete genome.
XX
KW .
XX
OS Turnip yellow mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymoviridae;
OC Tymovirus.
XX
RN [1]
RP 1-6319
RX MEDLINE; 93090089.
RX PUBMED; 1456892.
RA Skotnicki M.L., Mackenzie A.M., Gibbs A.J.;
RT "Turnip yellow mosaic virus variants produced from DNA clones encoding
RT their genomes";
RL Arch. Virol. 127(1-4):25-35(1992).
XX
RN [2]
RP 1-6319
RA Mackenzie A.M., Gibbs A.J., Keese P., Osorio-Keese M.E., Torronen M.,
RA Ding S.W., Howe J., Srifah P., Skotnicki M.L., Meek A.;
RT "Taxonomy of the tymoviruses";
RL Unpublished.
XX
RN [3]
RP 1-6319
RA Mackenzie A.M., Gibbs A.J., Keese P., Osorio-Keese M.E., Torronen M.,
RA Ding S.W., Howe J., Srifah P., Skotnicki M.L., Meek A.;
RT ;
RL Submitted (20-NOV-1997) to the EMBL/GenBank/DDBJ databases.
RL Research School of Biological Sciences, Australian National University,
RL Biology Place, Acton, Canberra, ACT 2601, Australia
XX
FH Key Location/Qualifiers
FH
FT source 1. .6319
FT /db_xref="taxon:12154"
FT /mol_type="genomic RNA"
FT /organism="Turnip yellow mosaic virus"
FT /isolate="Blue Lake"
FT 5'UTR 1. .88
FT CDS 89. .1975
FT /codon_start=1
FT /db_xref="GOA:O56253"
FT /db_xref="InterPro:IPR004935"
FT /db_xref="UniProt/TrEMBL:O56253"
FT /note="overlapping protein"
FT /function="involved with movement"
FT /protein_id="AAB92648.1"
FT /translation="MSNGLPISIGRPCTHDSQRSLSASDSRIHSRFDSLLDTDLPMVHS
FT EGTSAPTQLLRHPNIWFGNIPPPPRRPQDNRDFSPLHPLVFPGHHSQLRHVHETQQVQQ
FT TCPGELKLSGIEELPPAPQRQHSLPLHITRPSRFPHHFHARRPDVLPSLPDHGPILAKT
FT KPRTSVRQPRSATRGPSFRPILLPEAVHVHDDPPHSPLRPGRSRSWQLQPTIRRPLLAP
FT NQFNSPRQPPPFSDDPGILGPCPLAPNSTRDPPPRPITPGPFNTHGVRPLSVLPRAPPR
FT RGLLPNPRRHRTSTGHIPSTTASRPIGPPSRLQRPVHLHQSGPHTPDFRPSGIRKDAFF
FT QTRPRLGHLERLGQSADLRTSERTPSTKRRLPRPSEPNRLPSSLPEATLAPSYRHRRSH
FT PLLPNPPAALPSIAYTSSRGKIHHSLPKGALPKEGPPPPPRRLPSPATPPQLPLRDLGC
FT TPSFPTPPKTSTRAPESCIAAPPTDIAPLDSDPVLSVRTEVHAPERRTFMDPEALRAAL
FT AGLPSPPRSVGIIHTASQTVLPTNSPSPTRHLPPTSSPWILQSPVGEDAIVDSEDDSIS
FT SFHSHDFNSPSGPLRSQSPSRFRLHLRSPSTSSGIEPWSPASYDYGSAPDTD"
FT CDS 96. .5630
FT /codon_start=1
FT /db_xref="GOA:O56254"
FT /db_xref="InterPro:IPR000606"
FT /db_xref="InterPro:IPR001788"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="InterPro:IPR008043"
FT /db_xref="UniProt/TrEMBL:O56254"
FT /product="replicase protein"
FT /protein_id="AAB92649.1"
FT /translation="MAFQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKE
FT LLPLLNSYGIPTSGLGTSHHPHAAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFSKLA
FT QVNSNFRELKNYRLHPNDSTRYPFTSPDLPVFPTIFMHDALMYYHPSQIMDLFLQKPNL
FT ERLYASLVVPPEAHLSDQSFFPKLYTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRIN
FT SIRLGNHHLSVTILESWGPVHSLLIQRGTPPPDPSLQAPSTLMASDLFRSYQEPRLDVV
FT SFRIPDAIELPQATFLQQPLRDRLVPRAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKP
FT DHDWVTSNAWDNLQTFALLNVPLRPNVVYHVLQSPIASLALYLRQHWRRLTATAVPILS
FT FLTLLQRFLPLPIPLAEVKSITAFRRELYRKKAPHHPLDVFHLQQHLRNYHSAISAVRP
FT ASPPHQRLPHALQKAALLLLRPISPLLTATPFFRSEQKSMLPNAELSWTLKRFALPWQA
FT SLVLLALSESSILLHKLFSPPTLQAQHDTYHRHLHPGSYSLQWERTPLSIPRTTAFLPF
FT TPTTSTAPPDHSEASLPPAFASTSVPRPPPVASSPGAQPPTTTAAPPTPIEPTQRAHQN
FT SDLTLESSTPIEPPPPSIQSPDIPPSAPVLFPEINSPRRFPPQLPTTPDFEPTRTSPPP
FT STSHQDSTDPADPLMGSHLLHHSLPAPPTHPLPSSQLLPAPLTNDPTAIGPVLPFEELH
FT PRKYPENTATFLTRLRSLPSNHLPQPTLNCLLSAVSDQTKVSEDHLWESLQTILPDSQL
FT RNEEINSLGLSTEHLTALAHLYNFQATVYSDRGPILFGPSDTIKRIDITHTTGPPSHFS
FT PGKRLLGSQPSAKRHPSDSLIRAMKSFKVSGNYLPFSEAHNHPTSISHAKNLVSNMKNG
FT FDGVLSLLDVSTGQRTGPTPKDAIIQIDHYLDTNPGKTTPVVHFAGFAGCGKTYPIQQL
FT LKTKLFKDFRVSCPTTELRTEWKTAMELHGSQSWRFNTWESSILKSSRILVIDEIYKMP
FT RGYLDLSILADPALELVIILGDPLQGEYHSQSKDSSNHRLPSETLRLLPYIDMYCWWSY
FT RIPQCIARLFRIHSFNAWQGVIGSVSTPHDQSPVLTNSHASSLTFNSLGYRSCTISSSQ
FT GLTFCDPAIIVLDNYTKWLSSANGLVALTRSRSGVQFMGPSSYVGGTNGSSAMFSDAFN
FT NSLIIMDRYFPSLFPQLKLITSPLTTRSPKLNGAAPSASPTHRSPNFHLPPHIPLSYDR
FT DFVTVNPTLPDQGPETRLDTHFLPPSRLPLHFDLPPAITPPPVSTSVDPPQAKASPVYP
FT GEFFDSLAAFFLPAHDPSTREILHKDQSSNQFPWFDRPFSLSCQPSSLISAKHAPNHDP
FT TLLPASINKRLRFRPSEAPHQITADDVVLGLQLFHSLCRAYSRQPNSTVPFNPELFAEC
FT ISLNEYAQLSSKTQSTIVANASRSDPDWRHTTVKIFAKAQHKVNDGSIFGSWKACQTLA
FT LMHDYVILVLGPVKKYQRIFDNADRPSHIYSHCGKTPNQLRDWCQEHLTHSTPKIANDY
FT TAFDQSQHGESVVLEALKMKRLNIPSHLIQLHVHLKTNVSTQFGPLTCMRLTGEPGTYD
FT DNTDYNLAVIYSQYDVGSCPIMVSGDDSLIDHPLPTRHDWPSVLKRLHLRFKLELTSHP
FT LFCGYYVGPAGCIRNPLALFCKLMIAVDDDALDDRRLSYLTEFTTGHLLGESLWHLLPE
FT THVQYQSACFDFFCRRCPKHEKMLLDDSTPTLSLLERITSSPRWLTKNVMYLLPAKLRL
FT AITSLSQTQSFPESIEVSRAESELLHYVQ"
FT CDS 5645. .6214
FT /codon_start=1
FT /db_xref="GOA:P90243"
FT /db_xref="HSSP:1AUY"
FT /db_xref="InterPro:IPR000574"
FT /db_xref="UniProt/TrEMBL:P90243"
FT /product="virion protein"
FT /protein_id="AAB92650.1"
FT /translation="MEIDKELAPQDRTVTVATVLPIAPGPSPFTIKQPFQSEVLFAGTK
FT DAEASLTIANIDSVSTLTTFYRHASLESLWVTIHPTLQAPAFPTTVGVCWVPANSPVTP
FT TQITKTYGGQIFCIGGAINTLSPLIVKCPLEMMNPRVKDSIQYLDSPKLLISITAQPTA
FT PPASTCIITVSGTLSMHSPLITDTST"
FT 3'UTR 6215. .6319
XX
SQ Sequence 6319 BP; 1459 A; 2426 C; 1065 G; 1369 T; 0 other;
AF035403 Length: 6319 April 19, 2005 08:52 Type: N Check: 2765 ..
1 gtaatcaaat accaattcca gctctctttt gacaactggt cttataccaa
51 ctttccgtac acttgcaacc ctcgtaagac aattgcaaat gagtaatggc
101 cttccaatta gcattggacg cccttgcacc cacgactcac agagatccct
151 ctctgcatcc gattctcgaa tccacagtag attcgattcg ctcctcgata
201 cagacctacc catggtccat tccgaaggaa cttctgcccc tactcaactc
251 ttacggcatc ccaacatctg gtttgggaac atcccaccac ccccacgccg
301 cccacaagac aatcgagact tttctccttt gcacccactg gtctttccag
351 gccaccactc ccagctccgt catgttcatg aaacccagca agttcagcaa
401 acttgcccag gtgaactcaa actttcggga attgaagaac taccgcctgc
451 accccaacga cagcactcgt taccccttca catcaccaga ccttcccgtt
501 ttccccacca ttttcatgca cgacgccctg atgtactacc atccctccca
551 gatcatggac ctattcttgc aaaaaccaaa cctcgaacgt ctgtacgcca
601 gcctcgtagt gccacccgag gcccatcttt ccgaccaatc cttcttcccg
651 aagctgtaca cgtacacgac gacccgccac actctccact acgtcccgga
701 aggtcacgaa gctggcagtt acaaccaacc atccgacgcc cactcttggc
751 tccgaatcaa ttcaattcgc ctcggcaacc accacctttc agtgacgatc
801 ctggaatcct ggggccctgt ccactcgctc ctaattcaac gagggacccc
851 cccccccgac ccatcactcc aggccccttc aacactcatg gcgtccgacc
901 tctttcggtc ttaccaagag ccccgcctcg acgtggtctc cttccgaatc
951 ccagacgcca tcgaacttcc acaggccaca ttccttcaac aaccgcttcg
1001 agaccgattg gtcccccgag ccgtctacaa cgccctgttc acctacacca
1051 gagcggtccg cacactccgg acttcagacc cagcggcatt cgtaaggatg
1101 cattcttcca aaccagacca cgattgggtc acctcgaacg cctgggacaa
1151 tctgcagacc ttcgcacttc tgaacgtacc ccttcgacca aacgtcgtct
1201 accacgtcct tcagagccca atcgcctccc tagctcttta cctgaggcaa
1251 cattggcgcc gtcttaccgc caccgccgtt cccatcctct ccttcctaac
1301 cctcctgcag cgcttccttc cattgcctat acctctagca gaggtaaaat
1351 ccatcacagc cttccgaagg gagctctacc gaaagaaggc cccccaccac
1401 cccctcgacg tcttccatct ccagcaacac ctccgcaatt accactccgc
1451 gatctcggct gtacgcccag cttccccacc ccaccaaaga cttccacacg
1501 cgctccagaa agctgcattg ctgctcctcc gaccgatatc gcccctcttg
1551 acagcgaccc cgttctttcg gtccgaacag aagtccatgc tcccgaacgc
1601 cgaactttca tggaccctga agcgcttcgc gctgccttgg caggcctccc
1651 tagtcctcct cgctctgtcg gaatcatcca tactgcttca caaactgttc
1701 tccccaccaa ctctccaagc ccaacacgac acctaccacc gacatcttca
1751 ccctggatcc tacagtctcc agtgggagag gacgccattg tcgattccga
1801 ggacgacagc atttcttcct ttcactccca cgacttcaac agcccctccg
1851 gaccactccg aagccagtct ccctcccgct ttcgcctcca cctccgttcc
1901 ccgtccacct ccagtggcat cgagccctgg agcccagcct cctacgacta
1951 cggcagcgcc cccgacaccg attgaaccca cccagcgcgc tcatcaaaat
2001 tctgacctca cgctcgaaag ttcaacccca attgaacctc ccccaccctc
2051 catccaatcc cccgacatcc caccttccgc ccccgttctt ttcccagaaa
2101 tcaactcacc gcgtcgtttt cccccccaac ttcccaccac acccgatttc
2151 gaacccaccc gcacttcacc ccctccttcc acttcgcatc aagattcgac
2201 tgaccccgcg gaccccctga tgggctctca ccttctgcac cattcactac
2251 ctgcacctcc cacccacccg cttccatctt cacagctctt acccgcacct
2301 ttgacaaacg accccaccgc gatcggcccg gtactcccct ttgaagaact
2351 ccacccacgc aagtaccccg aaaacaccgc cactttcctt acgaggctcc
2401 gttcactccc ttcaaaccat cttccacaac ccaccctgaa ttgtctcctc
2451 tctgctgtct ccgaccaaac caaggtttcc gaggaccacc tctgggagtc
2501 tttacagaca attctcccag acagccaact caggaacgaa gagatcaact
2551 ctctcggact ttcaactgaa cacctcaccg cgttggccca tctttacaac
2601 ttccaggcaa ctgtttactc cgatcgcggt cccatcctct tcggcccatc
2651 cgacaccatt aagagaatcg acatcaccca caccaccgga ccaccatccc
2701 acttttcacc cggcaaaaga cttttaggca gccaaccttc agccaagcgc
2751 catccctccg actcactcat cagagccatg aagtctttca aagtatccgg
2801 caactacctt cccttctctg aggcccacaa ccatcccacc tccatctcac
2851 atgccaagaa cttggtttca aacatgaaga atggattcga cggcgtcctc
2901 tcccttctcg acgtctccac aggccaacga accggaccca cccccaaaga
2951 cgcgatcatt cagatagacc actacctcga caccaacccc ggcaaaacca
3001 cccctgtggt gcattttgct ggctttgctg gctgtggaaa gacatatccg
3051 atccaacagc tccttaaaac caaactgttc aaagactttc gggtctcctg
3101 ccccaccaca gaactcagaa ccgaatggaa gactgcgatg gaacttcatg
3151 gctcccagtc atggcgcttt aacacttggg agtcttccat tctcaagtca
3201 tccagaattc tggtcatcga tgagatctac aaaatgccaa gagggtacct
3251 cgacctttcc attctcgctg accccgccct cgaactcgtc ataatcctcg
3301 gtgatcctct ccagggcgag taccactctc aatcgaaaga ctcatccaat
3351 caccgccttc cctccgaaac tctcaggctg ctaccataca ttgacatgta
3401 ctgctggtgg agttatcgca ttccccaatg catcgcccga ctcttccgaa
3451 ttcacagctt caatgcctgg caaggagtca tcggctccgt ttcaactccc
3501 catgatcaat cccccgttct caccaatagt catgcctcat ctctcacctt
3551 caacagcctg ggatatcgct cctgcacgat cagctctagc caaggcctca
3601 cattctgcga ccctgccatc atcgtcctgg acaactacac caagtggctc
3651 tcctcggcca acggcctcgt cgccctcacc cgatccagat caggtgtcca
3701 attcatgggc ccctcttcct atgtcggggg aaccaacggc tcttccgcca
3751 tgttttctga cgccttcaac aacagcctca tcatcatgga tcgctacttc
3801 ccatccctgt tcccacaact caagctcatc acctcccccc tcacaactcg
3851 cagccccaaa ctcaacgggg ccgcccccag cgcatctccc acccatcgct
3901 cgccaaactt ccacctcccc ccacacattc ccctctctta tgatcgtgat
3951 ttcgttacgg tgaacccaac tctccccgat cagggacccg aaacaagact
4001 cgacacccac ttcctcccac cttctcggct cccgcttcat ttcgatctcc
4051 caccagctat cacccccccc ccggtttcca caagcgtcga cccgccacaa
4101 gctaaagcta gccccgtcta tccaggcgag ttcttcgatt ctctggcggc
4151 gttcttctta ccagcacacg acccatcaac aagggaaata ctccacaaag
4201 atcaatctag caaccagttc ccttggttcg accgaccctt cagcttgtcc
4251 tgccagccct caagtttaat ttccgccaag catgcgccca atcacgatcc
4301 gacccttctg ccggcctcca tcaataagcg cttgcgattc agacccagtg
4351 aagcaccgca ccaaatcacc gcagacgacg tggtcctagg cctgcaactc
4401 ttccactctc tctgccgcgc ctactcacgt caacccaaca gcaccgttcc
4451 attcaaccct gaacttttcg cagaatgtat ctctctgaat gaatacgcgc
4501 agctcagttc caaaacccaa tccaccatag tggccaacgc ttcacgctcc
4551 gacccagact ggcgacacac caccgtcaag atttttgcga aagctcaaca
4601 caaagtcaac gacggctcca tcttcggttc atggaaggcc tgccaaactc
4651 tcgcactcat gcacgattac gtaattctag ttcttggacc cgtcaagaaa
4701 tatcaaagaa tcttcgacaa cgctgatcgg ccatctcata tctactcaca
4751 ctgcggcaag acacccaacc aacttcgaga ttggtgccag gaacatctca
4801 ctcattccac tccaaaaatc gcaaatgact acaccgcctt cgaccaatcc
4851 cagcatggag aatccgtggt tcttgaagcc ctcaaaatga agagactgaa
4901 cattccgagc catttgattc agctccatgt ccacctcaag accaacgtct
4951 ccacccagtt cggccccctc acatgcatgc gcctgaccgg ggaacccgga
5001 acttacgacg acaacactga ctacaacctc gcagtcatct actctcaata
5051 tgacgttggt tcctgcccca tcatggtctc tggcgacgac tcactcatag
5101 accaccctct tcccactcgc cacgactggc cctccgttct caaacgcctc
5151 cacctccgct ttaaacttga actcacttct catcccctct tttgtggcta
5201 ctacgtcggt ccagcaggct gcatccgcaa ccccctggct cttttctgca
5251 agctcatgat cgcagtggac gatgacgccc tcgacgaccg acgactcagc
5301 tacctcaccg agttcaccac cggacacctc cttggcgaat cactatggca
5351 cctcctcccc gaaacccacg tccagtatca gtcagcctgc ttcgacttct
5401 tctgcaggcg gtgcccaaaa cacgagaaga tgctcctcga tgattccaca
5451 cccacactca gcctcctcga acgaatcact tcttcaccga ggtggctcac
5501 caagaacgtc atgtatctcc tccccgccaa gctcagactg gctatcacct
5551 ctctgtctca aacgcaatct ttcccagaat ccatcgaggt ttcccgcgct
5601 gagtctgaat tgcttcacta cgtccaatag caatcagccc cgacatggaa
5651 atcgacaaag aactcgcccc ccaagaccgc accgtcaccg tcgccaccgt
5701 tttaccaatt gcccccggcc cctcaccttt caccatcaaa caaccgttcc
5751 agtctgaagt tctgtttgct gggaccaaag atgccgaggc ctctctcacc
5801 atcgccaaca tcgacagcgt ttccaccctt accaccttct accgtcatgc
5851 ctctctggaa tcactctggg tcaccatcca tcctaccttg caagccccgg
5901 ctttcccaac cacggttggc gtttgctggg tacccgccaa ctccccagtc
5951 actcccaccc agatcaccaa gacctacggc ggccagatct tctgcattgg
6001 aggcgccatc aacactctct cacccctcat cgtcaagtgc ccacttgaaa
6051 tgatgaaccc ccgggtcaaa gattcaattc aataccttga ctcgcccaaa
6101 ctcctcatct ccatcaccgc tcaacccacc gctccccccg catcgacctg
6151 cataataact gtatcaggaa ctctctcgat gcactctccg ctcatcacgg
6201 acacttccac ctaagttctc gatctttaaa atcgttagct cgccagttag
6251 cgaggtctgt ccccacacga cagataatcg ggtgcaactc ccgccccttt
6301 tccgagggtc atcggaacc