Sequence of DPV Erysimum latent virus
Erysimum latent virus, complete genome.
ACC No: AF098523
Dated: 2000-03-14 | Length: 6035 | CRC: 273534859
!!NA_SEQUENCE 1.0
ID AF098523 standard; RNA; VRL; 6035 BP.
XX
AC AF098523;
XX
SV AF098523.1
XX
DT 19-NOV-1998 (Rel. 57, Created)
DT 14-MAR-2000 (Rel. 63, Last updated, Version 3)
XX
DE Erysimum latent virus, complete genome.
XX
KW .
XX
OS Erysimum latent virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirus.
XX
RN [1]
RP 1-6035
RX MEDLINE; 92300338.
RA Srifah P., Keese P., Weiller G., Gibbs A.J.;
RT "Comparisons of the genomic sequences of erysimum latent virus and other
RT tymoviruses: a search for the molecular basis of their host specificities";
RL J. Gen. Virol. 73(Pt 6):1437-1447(1992).
XX
RN [2]
RP 1-6035
RA Mackenzie A.M., Gibbs A.J.;
RT ;
RL Submitted (13-OCT-1998) to the EMBL/GenBank/DDBJ databases.
RL Research School of Biological Sciences, Australian National University,
RL Biology Place, Acton, Canberra, ACT 2601, Australia
XX
FH Key Location/Qualifiers
FH
FT source 1. .6035
FT /db_xref="taxon:12152"
FT /organism="Erysimum latent virus"
FT modified_base 1
FT /note="putative part of a cap structure that probably
FT occurs in all tymoviruses"
FT /mod_base=m7g
FT 5'UTR 1. .96
FT CDS 97. .1419
FT /codon_start=1
FT /gene="OP"
FT /product="overlapping protein"
FT /protein_id="AAC80554.1"
FT /translation="MANGFSTSPRRPILHHSPRFNLGSSSRLFCESTPIFIGTIPLHCP
FT KGTCPPAQSHGHSSLRTNLNSSPPRCPQNPGTEPSLQPLGKVLQCGLSRGLHETLKVLQ
FT TPREELPLQISSQLPTSPSRLQSVPTSQHKPAYREAILHPRLPDVFYAAPNLRFVRKLP
FT KPSQSVRQPRRSSRKLNDRLVSKPRSVSVLNPQVDSPLHTRRALSRQLQSARQRPRLAE
FT NLCDPNSIPEPVRVRPGILGPSPFPSYREELSNTKSRFSEDKGSDFLPNPPSSNSSEPG
FT LPGRPSQAPSCASENLRRPLHLHSSNPNSPHFRSRWIRKNSVKQARVQLGHISSLGQSP
FT NLRPLDSLLQASRVLHATSVSSYKTQGASHEECFKTRSDGITSSHSGHLHHNDRVEHQL
FT QQGPLLQCSQDSLAEPTYRPGTPSLPNFCIAAKELSSTQPS"
FT CDS 104. .5350
FT /codon_start=1
FT /gene="RP"
FT /product="replicase protein"
FT /protein_id="AAC80555.1"
FT /translation="MAFQLALDALSSTTHRDSISAPLLDSSVSQLQSSLELFPYTVPKE
FT LVPQLNRMGIQVSGLTSTPHPHAAHKTLELNLLFNHWAKSCNVDSAVVFMKPSKFFKLQ
FT EKNSHFKSLHNYRLHPHDSNRYPHPSTSLPTEKRFYIHDSLMYFTPHQISGLFESCPNL
FT LSLYASLVVPPESSMTDLSLNPDLYRYSIHKSTLHYTPEGHSAGSYNQPVNALDWLKIS
FT AIQTPSLSLSVSVLESWGPLHSLLIERSSQTQNPDSQKIKDLISFQTPQALILPNPDSL
FT AVPLRHRLVPQKTYDALFTYTRATRTLRTSDPAGFVRTQSNKPEFNWVTSQAWDNLQTY
FT ALLTASYRPPVSYTLHRSPLTKLKELLTRNALKLAAMASPALTLAIFTTMTALNTNSSK
FT ALSFSALKIHLLNPLTGPELLHFQTSVLQQKNSAPLSQAEAKQELDKSAVPAPSEHDSS
FT ASQSTSLSLSASSQLLSTEKHPGSELSSKAIPVSTSCPSASKQLAPPLTAESHSSVNAL
FT LRKFLGPNSPQSNLDNYNLHLHPESFTLGWKRRPLLLDSHSSFLPSSCLQPPASPSIAA
FT APHPLPPAQKPPRPPTTVPTPKPLASPSQTQAAQPATQSPPSIPQTAPVTSLLPAPLET
FT DDSCAGPISTFQDLFPASYYPHTANFPCRSKIPGYLEAPYPPLDCMLVALSAQMPQSPQ
FT ELWSALNTLMPLSALTSPSLRVLGLGTEELTALSYYYHFQAEIHSDNEIYRFGIQTAST
FT KLCLIRDSGPPAHFTAPDPLRAGSPPSRSQTNENSLRRSLLGFRLNGNLLPIDQVHSFT
FT SEPSRAKNLASNMKNGFDGILTTLAALSSLSSGPSPRDRIFTLDGICDFALPKTVDLIH
FT LSGFAGCGKTHPIQQLLKTPHFHNFRVVTPTTNLRSEWKSDMALPAHHNWRFSTWESAL
FT LKHAEILVIDEIYKLPRGYLDLSLIADPTVKLVILLGDPLQGEYHSTSAHSSNLRLSSE
FT IPRLLPFIDYYCYWSYRVPKCVAKLFSLPCFNPSEGFIKTTLDFFPSANNLVNSHSVVH
FT ISEACGWNAVTISSSQGCTFSDPAFIHLDRNTALLSPSNCLVALTRSRSGVYFKGDFTF
FT LSSLSGSSRMFSLAYSGQPIHLPDFFPEIVFQLNMITAPLTKRSSSFRSGFQPNISSAP
FT KIPAPPNLPCPPHIPTNYSKDVIVNNQALYGESLERRLSVLHLPPTRMTLHSDINITAP
FT SSSSFQPSDEPVPSDHTAVYPGFDFFTLAAHFLPAHDPEVKEIELKDQTSQQFPWLNLD
FT FHISCQTSSLISARHQPGSDSTLLPASLHKRLRFRPTAAPYQITPSDSFLGNCLYRSWC
FT QVYRRDPNVRLPFNEALFLECIAVNDYAQLSSKTQATIVANASRSDPDWRHTFVKIFAK
FT SQHKVNDGSIFGPWKACQTLALMHDYVILTLGPVKKYQRLFDQLERPSHIYYHAGNTPH
FT DLRRWCSKHLETSHCTTNDYTAFDQSQHGEAVVFEVLKMRRLSIPENLISLHVHLKTNV
FT ETQFGPLTCMRLTGEPGTYDDNTDYNLAVLNLQYDLRKTPTLVSGDDSYLSGTLSPRSN
FT WPFVKELLHLRLKPSSLIDGLFCGYYLGPQGCIRNPLALFAKLMIAEDDGSAFDKLPSY
FT LTEFSIGHGLGDSLWQLLPSDLVLYQSACFDYFCRKATRSQKILLQPGLVDQETLDKIA
FT LSAKFISRPFYSMLSSHARSLISTKFKLDSSLTTLQDPMVEFELLPFSNVQ"
FT misc_feature 5315. .5330
FT /note="tymobox"
FT /gene="RP"
FT CDS 5347. .5955
FT /codon_start=1
FT /gene="VP"
FT /product="virion protein"
FT /protein_id="AAC80556.1"
FT /translation="MTSSRSTELIETQEDVVRKLSQKTPVSNFSALPLPNGPQAPTQLQ
FT PFQFEFPLPAGQEGSVTLPLATFPKMATFLSRHRRAQLTQLHAVVSPSAVSIGHPLTVQ
FT LIWVPASSTTTSSQILGTYGGQQISVGGQVTNSSPAKVSANLLMMNPHIKDSTSYTDTP
FT KLLVYSTPAVPDDKLTTSSASIIVFGEVLLSSPQLNPSA"
FT 3'UTR 5956. .6035
XX
SQ Sequence 6035 BP; 1432 A; 2087 C; 980 G; 1536 T; 0 other;
AF098523 Length: 6035 December 21, 2001 14:51 Type: N Check: 811 ..
1 ggaaaattat ttcaatcaga aaactctctt catagacttg ttttcttcct
51 tcccaccccc tctaaacctc tcttatccaa gatctcgttt agatttatgg
101 ccaatggctt ttcaactagc cctagacgcc ctatcctcca ccactcaccg
151 agattcaatc tcggctcctc ttctcgactc ttctgtgagt caactccaat
201 cttcattgga actattcccc tacactgtcc caaaggaact tgtcccccag
251 ctcaatcgca tgggcattca agtctccgga ctaacctcaa ctcctcaccc
301 ccacgctgcc cacaaaaccc tggaactgaa ccttctcttc aaccattggg
351 caaagtcctg caatgtggac tcagccgtgg tcttcatgaa accctcaaag
401 ttcttcaaac tccaagagaa gaactcccac ttcaaatctc ttcacaatta
451 ccgacttcac cctcacgact ccaatcggta cccacatccc agcacaagcc
501 tgcctacaga gaagcgattt tacatccacg actccctgat gtattttacg
551 ccgcaccaaa tctcaggttt gttcgaaagt tgcccaaacc ttctcagtct
601 gtacgccagc ctcgtcgttc ctccagaaag ctcaatgacc gacttgtctc
651 taaaccccga tctgtatcgg tactcaatcc acaagtcgac tctccattac
701 acaccagaag ggcactcagc cggcagttac aatcagcccg tcaacgccct
751 cgattggctg aaaatctctg cgatccaaac tccatccctg agcctgtccg
801 tgtccgtcct ggaatcttgg ggccctctcc attcccttct tatcgagagg
851 agctctcaaa cacaaaatcc agattctcag aagataaagg atctgatttc
901 cttccaaacc ccccaagctc taattcttcc gaacccggac tccctggccg
951 tccctctcag gcaccgtctt gtgcctcaga aaacttacga cgccctcttc
1001 acttacactc gagcaacccg aactctccgc acttcagatc ccgctggatt
1051 cgtaagaact cagtcaaaca agcccgagtt caactgggtc acatctcaag
1101 cttgggacaa tctccaaacc tacgccctct tgacagcctc ttacaggcct
1151 cccgtgtcct acacgctaca tcggtctcct cttacaaaac tcaaggagct
1201 tctcacgagg aatgctttaa aactcgcagc gatggcatca ccagctctca
1251 ctctggccat cttcaccaca atgaccgcgt tgaacaccaa ctccagcaag
1301 gccctctcct tcagtgctct caagattcac ttgctgaacc cacttacagg
1351 cccggaactc cttcacttcc aaacttctgt attgcagcaa aagaactcag
1401 ctccactcag ccaagctgag gcgaaacaag aattggacaa gtcagctgtg
1451 ccagcacctt ctgaacatga ctctagcgcc tctcaatcaa ctagcctctc
1501 tctcagcgct tcttcccaac ttcttagcac cgaaaagcat cccggctccg
1551 agctttcttc caaagctatc ccggtctcta catcctgccc ctctgcttcc
1601 aaacagcttg ctcctccgct cactgctgag tctcactcct cagtcaatgc
1651 gcttctgcgc aaattcctgg gtcccaactc tcctcaatcc aatctggaca
1701 attacaattt gcatctacat cccgagtcgt tcactctggg ctggaaacga
1751 cgacccctac ttttggactc tcattcaagt ttcctaccct cttcttgcct
1801 tcaacctcca gcatctccca gcatagcagc agctcctcac cctcttcctc
1851 ctgctcagaa gcctccccgg ccacctacca ctgtgcccac tcccaaacct
1901 ctagcttctc cttcccaaac tcaagctgct cagccggcca cacaatctcc
1951 tccttcgatt ccccaaacag ccccagttac ttcactcctc ccggctcccc
2001 tagaaactga tgactcatgc gctggcccaa tctccacctt ccaggatctc
2051 tttccagcca gttactaccc tcacacagcc aacttcccct gccgatcaaa
2101 aataccgggc tatcttgaag ctccctaccc ccctctggat tgcatgctgg
2151 tcgctctctc tgcccaaatg cctcaatccc ctcaagagct gtggtcagcg
2201 ctcaacactc taatgcctct aagcgctctc acctcaccca gcctccgagt
2251 cttaggtctc ggcaccgagg agctcactgc tctcagttac tattatcact
2301 ttcaggccga gattcattcc gacaatgaaa tatatagatt cggcatacaa
2351 actgcttcaa ccaagctctg cctcattcgg gattcaggac ccccagctca
2401 cttcactgct cctgatcctc taagagccgg ctcccctccc agcagatccc
2451 agaccaatga gaattctcta cgccgctcac ttctaggctt ccgcttgaat
2501 gggaatctct tgccgatcga tcaagtccac agcttcactt ctgagccctc
2551 tcgcgcaaag aaccttgctt ccaacatgaa aaatggtttt gatggcattc
2601 ttacaaccct cgctgcgctc tcctccctct cctctggacc ctcaccccgc
2651 gatcgcatct tcactcttga tggcatctgc gattttgctc tacccaaaac
2701 tgttgacctt attcacctgt ccgggtttgc cggttgtggc aaaactcatc
2751 caattcaaca gcttctcaaa acccctcact tccacaactt cagggtggtc
2801 actcccacca ccaaccttcg atcagagtgg aaatcagaca tggctctccc
2851 agcacaccac aactggagat tttcaacttg ggaatcagcc ctcttaaaac
2901 atgccgaaat actcgtcatt gacgaaattt acaaacttcc tcgaggatac
2951 ctagaccttt ctctcatagc tgatcccact gtcaagctcg tcatcctcct
3001 cggagacccc cttcaaggcg agtatcactc aacttctgct cactcctcca
3051 acttgcggct cagctcagaa atcccaaggt tgctcccttt catcgactac
3101 tactgttact ggagctaccg cgttccaaaa tgtgtcgcaa agcttttctc
3151 cctgccatgt ttcaacccct ctgaaggctt cataaagact actctggact
3201 ttttccccag cgctaacaat ttggttaaca gccactcagt agtccacatc
3251 tctgaagctt gcggctggaa tgctgtcaca atatcttcga gtcaaggatg
3301 caccttctcc gaccctgctt tcatccacct tgatcgtaac acagctcttc
3351 tgtctccctc aaactgcctc gtagctctca ccagatcccg ctctggagtt
3401 tacttcaaag gcgatttcac atttctgagc tctctctccg gttcctctcg
3451 aatgttctcg ttagcttact ctggccagcc gattcacctt ccagacttct
3501 ttccagagat tgtcttccaa ctcaacatga taactgcccc tctgacaaaa
3551 agaagttcca gctttcgatc cgggttccaa cccaacatct cttctgcccc
3601 aaaaatcccg gcccctccaa atcttccctg cccccctcat atcccaacca
3651 attactcgaa agacgtcatt gtgaacaatc aagctctcta tggtgagtcc
3701 ctcgaaagac gtttgtctgt tctgcatctg ccccccactc gcatgactct
3751 tcattctgac atcaatatca ccgcaccttc aagcagcagt ttccagccct
3801 cagacgagcc agttccttct gaccacactg ctgtctaccc tggctttgac
3851 ttcttcactc tcgccgctca ctttcttcca gctcacgacc cagaagtcaa
3901 agaaattgaa ctcaaagacc aaaccagcca acaatttccc tggctgaatc
3951 tagacttcca catatcatgc cagacttctt ctttgatctc tgcaaggcac
4001 caacccgggt cagactccac tctccttcca gcttcactcc acaaaagact
4051 ccgatttcgc cccacagcag ctccatacca aatcactcct tctgactctt
4101 tcctaggcaa ttgtctctac cgctcctggt gtcaagttta ccgtcgcgac
4151 ccaaatgtgc gattgccctt caacgaagct ctttttctag aatgcattgc
4201 tgtcaacgac tacgcccagc tgagctcaaa aactcaagcc actattgtag
4251 ccaatgcatc tcgatcagac cctgactggc gacatacttt tgtaaaaatc
4301 ttcgctaagt cacaacacaa agtcaatgat ggctccattt ttggcccatg
4351 gaaagcttgc caaactcttg ctctcatgca tgattatgtc attctcaccc
4401 tgggtccggt taagaaatat caacgactgt tcgaccagct ggagcgacct
4451 tctcacatct actaccatgc agggaacact cctcatgacc ttaggcgctg
4501 gtgctccaaa cacttagaaa cctctcactg caccaccaat gattatacag
4551 ccttcgacca gagccagcac ggtgaagccg tcgtgtttga agtcctgaag
4601 atgagacgac tttccattcc ggaaaatctg atatctctgc acgtccatct
4651 caaaaccaac gtggaaaccc agttcggacc tctcacttgc atgcgactca
4701 ctggcgagcc cggcacctat gacgacaaca ctgactacaa cttggctgtt
4751 ctcaatctcc agtacgacct tcgcaaaaca ccgacccttg tctcaggcga
4801 tgactcctac ttatccggaa ccctttcccc aagatccaac tggcctttcg
4851 tcaaagagct cctccacctc cgcttaaaac cgagcagtct gatcgacggc
4901 ctcttctgcg gttactactt aggaccccaa ggctgcatcc gcaatccact
4951 tgcccttttc gctaaactca tgatagccga agacgatggc tccgcctttg
5001 acaaacttcc ttcctacctc accgagttct cgattggaca tggtcttgga
5051 gattctctct ggcagcttct cccttctgat cttgtgctct atcagagtgc
5101 gtgtttcgat tacttctgcc gcaaagccac acgctctcag aaaatcctac
5151 tgcaaccagg ccttgtagat caggaaactt tagacaagat tgctttatcg
5201 gccaagttca tatctcgtcc tttctactca atgctttcaa gccatgctcg
5251 cagcctgatt agtactaaat tcaaactcga ctcttccctc accactctcc
5301 aagatcccat ggttgagttt gaattgcttc ccttttccaa tgtacaatga
5351 cttcctctcg atccactgaa ctcatcgaga ctcaagaaga cgttgttcgt
5401 aaactctccc agaaaactcc agtttccaac ttctcagctc ttccacttcc
5451 aaatggacct caagccccaa ctcagctcca gccgttccag ttcgaattcc
5501 ctctcccggc tggccaagaa ggttctgtca ccctgcctct cgccaccttc
5551 cccaaaatgg caaccttcct ttcccgacac cgtcgagccc aactcactca
5601 acttcacgct gtcgtctctc ccagtgctgt atccattggg caccccctca
5651 ccgtccaact catctgggtc cccgccagct caacaaccac ttcctcccaa
5701 atactgggca cttacggcgg tcaacaaatc tcggtcggtg gtcaggtaac
5751 caactcctct ccagctaaag tctctgctaa cctcctcatg atgaacccac
5801 acatcaaaga ctctacaagc tacaccgaca cccccaaact cctcgtctac
5851 agcacccccg ctgtgccaga cgacaaactc acaaccagct cagcctccat
5901 cattgtcttt ggtgaagttc tgctcagctc ccctcaactc aatccttcag
5951 cttaagcaat agcgacctta agcttctttc tccagcgtgt caccacgttt
6001 cgctcctgaa tgtccccagg taaagggaca cccca