Sequence of DPV Raspberry ringspot virus
Raspberry ringspot virus putative coat protein mRNA, partial cds.
ACC No: AF110476
Dated: 2000-11-24 | Length: 1542 | CRC: 1668991879
!!NA_SEQUENCE 1.0
ID AF110476 standard; RNA; VRL; 1542 BP.
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AC AF110476;
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SV AF110476.1
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DT 02-JAN-2000 (Rel. 62, Created)
DT 24-NOV-2000 (Rel. 65, Last updated, Version 3)
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DE Raspberry ringspot virus putative coat protein mRNA, partial cds.
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KW .
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OS raspberry ringspot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Comoviridae;
OC Nepovirus; Subgroup A.
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RN [1]
RP 1-1542
RA Scott S.W., Zimmerman M.T., Jones A.T., Le Gall O.;
RT "Differences between the coat protein amino acid sequences of English and
RT Scottish serotypes of Raspberry ringspot virus exposed on the surface of
RT virus particles";
RL Virus Res. 68:119-126(2000).
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RN [2]
RP 1-1542
RA Scott S.W., Zimmerman M.T., Jones A.T., Le Gall O.;
RT ;
RL Submitted (01-DEC-1998) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology and Physiology, Clemson University, P.O. Box 340377, 120
RL Long Hall, Clemson, SC 29634-0377, USA
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DR SPTREMBL; Q9QAH5; Q9QAH5.
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FH Key Location/Qualifiers
FH
FT source 1. .1542
FT /db_xref="taxon:12809"
FT /organism="raspberry ringspot virus"
FT /strain="Himalaya (E)"
FT CDS <1. .>1542
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9QAH5"
FT /note="CP"
FT /product="putative coat protein"
FT /protein_id="AAF21931.1"
FT /translation="AYEVDPLHLLYYEEVTVPKDTLDGTLLARIDVRAKAATFDSAVWR
FT QWVRDGCLKPKIKVRITAATSCFSGIVLGACFDAYRRIPAATTKGITASLVTGLPNTVW
FT ATRDTSEVEWDIDLAAVCGHTFFALEDTFGYMDFLIYVLRGNEITAVADWSIYVSFHVD
FT WTQESMLATLIPTFVWPPKPTDISLFKEVWGPYRFTLDGTEAKESFAIMPGTAIPRGQQ
FT IVRTFPRVIAAHFRSWTGKIKMSIQEVSSIFLTGTYMVGVSWNATADLADIITRKHWIV
FT KSGENFELDLYCPYGENPTFTGLANGRPHIIVHKLGGIIGPKDSVGTFGFMIHIQGLTG
FT MYKNPTLHSGDRSVGSAWFRISNIVNNNLVFNIPGKIENMVAVAGNYDVTNYVNPNSLL
FT FSVTGLHGGVILLHITWCPNVILGEAKGTLKYMQYLYHTTTENFFGDQATLGIIDQDGF
FT TVDIACGNFFGATRVGLTGEIERLGIYSSNANSISEIRVSFEILSMNFYGSTIKLT"
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SQ Sequence 1542 BP; 400 A; 313 C; 360 G; 469 T; 0 other;
AF110476 Length: 1542 December 21, 2001 14:52 Type: N Check: 3841 ..
1 gcctatgagg tagacccact acatttgttg tattatgagg aagtcactgt
51 tccgaaggat acccttgatg gtactttact ggcccggata gatgttcgag
101 ctaaagctgc aacttttgat agtgctgtat ggcgacaatg ggttagagat
151 ggttgtctca aacccaaaat caaggtacgc atcactgcag ccacatcgtg
201 tttctccggt attgtactgg gtgcatgttt tgatgcatac cggagaatcc
251 cagcagctac aacaaagggt atcaccgcat cccttgtgac aggcttgccc
301 aataccgtct gggcaacgcg tgacacctca gaagtcgaat gggatatcga
351 tctcgcggca gtgtgtggac atactttctt tgcgttagaa gacacctttg
401 gatacatgga ttttttgatc tatgtactca gaggtaatga aatcaccgct
451 gttgctgatt ggtcaatata tgtttccttt catgttgatt ggacacagga
501 aagtatgttg gccacactta tccctacttt tgtatggccc ccaaagccga
551 ccgatatatc tctttttaaa gaagtgtggg ggccataccg ttttacgctg
601 gatggtaccg aggccaaaga aagttttgct ataatgcccg gtacagctat
651 tccccgtggg cagcagattg tgcgcacttt cccacgcgtt attgccgcac
701 acttccgatc atggactggg aagattaaaa tgtccattca ggaggtgtct
751 tccatctttc tgactggaac atatatggtt ggtgtgtcct ggaatgccac
801 tgcagatctt gctgatatta tcactcggaa gcactggatt gtcaaatccg
851 gtgaaaattt tgagcttgat ctgtattgtc cctatggtga aaaccctacc
901 ttcacaggcc tggccaatgg tagaccacat atcattgtgc acaagcttgg
951 gggaatcatc ggccctaagg attccgtagg aacgtttgga tttatgatac
1001 acatccaagg tctaactggt atgtataaaa atcctacgtt gcatagcggt
1051 gatcgttctg tgggaagtgc ctggttccgt atttccaata tcgtaaataa
1101 caacttggta tttaatatac caggtaaaat tgaaaatatg gttgcggttg
1151 ctgggaatta tgatgtcacc aattatgtta atccgaatag tttgttgttt
1201 tctgttactg gattgcatgg tggtgttata cttctccata ttacatggtg
1251 cccaaatgtg attcttggtg aagcaaaagg tacattgaaa tatatgcaat
1301 atctgtacca cacaaccacc gaaaatttct tcggagatca ggcaacactt
1351 ggaattatcg atcaggatgg tttcacggtt gatattgcct gtggcaattt
1401 ctttggtgcc acaagggttg ggctaactgg ggaaattgaa aggcttggta
1451 tttacagttc gaatgccaat tccatatctg aaattagggt ttcttttgaa
1501 atactatcca tgaattttta tggtagtacc atcaaactga cg