Sequence of DPV Raspberry ringspot virus

Raspberry ringspot virus putative coat protein mRNA, partial cds.

ACC No: AF110795

Dated: 2000-11-24 | Length: 1542 | CRC: 612250037

                !!NA_SEQUENCE 1.0
ID   AF110795   standard; RNA; VRL; 1542 BP.
XX
AC   AF110795;
XX
SV   AF110795.1
XX
DT   02-JAN-2000 (Rel. 62, Created)
DT   24-NOV-2000 (Rel. 65, Last updated, Version 3)
XX
DE   Raspberry ringspot virus putative coat protein mRNA, partial cds.
XX
KW   .
XX
OS   raspberry ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Comoviridae;
OC   Nepovirus; Subgroup A.
XX
RN   [1]
RP   1-1542
RA   Scott S.W., Zimmerman M.T., Jones A.T., Le Gall O.;
RT   "Differences between the coat protein amino acid sequences of English and
RT   Scottish serotypes of Raspberry ringspot virus exposed on the surface of
RT   virus particles";
RL   Virus Res. 68:119-126(2000).
XX
RN   [2]
RP   1-1542
RA   Scott S.W., Zimmerman M.T., Jones A.T., Le Gall O.;
RT   ;
RL   Submitted (03-DEC-1998) to the EMBL/GenBank/DDBJ databases.
RL   Plant Pathology and Physiology, Clemson University, P.O. Box 340377, 120
RL   Long Hall, Clemson, SC 29634-0377, USA
XX
DR   SPTREMBL; Q9QAH4; Q9QAH4.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1542
FT                   /db_xref="taxon:12809"
FT                   /organism="raspberry ringspot virus"
FT                   /strain="Lloyd George"
FT   CDS             <1. .>1542
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q9QAH4"
FT                   /note="CP"
FT                   /product="putative coat protein"
FT                   /protein_id="AAF21935.1"
FT                   /translation="AYEVDPLHLLYYESVDVPKDTLAGTLLTRIDVRAKAATFDSAVWR
FT                   QWVRDGCLKPKIKVRITAATSCFSGIVLGVCFDAYRRIPAATTKGITASLVTGLPNTIW
FT                   ATRDTSEVEWDIDLAAVCGHTFFALEDTFGYMDFLIYVLRGNEITAVADWSIYVSFHVD
FT                   WTQESMLATLIPTFVWPPKPTDISLLKEVWGPYRFTLDGTEAKGSFAIMPGTAIPHGQQ
FT                   IVRTFPRVVAAHFRSWTGKVRMSIQEVSSIFLTGTYMVGVSWNATADLADIVTRKHWIV
FT                   KSNEIFEVDLYCPYGENPTFTGQANGKPFIIVHKLGGIVGPKDSVGTFGFMIHIHGLTG
FT                   VYRNPTLHSGDRSVGSAWFRISNIVDDNLVFNIPGRIEDIIAAAGKYDVTNYVNPTSLL
FT                   FSVTGLHGGIIRLHITWCPNTNLGESKGTLKYMQYLYHTATENFFGDQATRGIIDQDGF
FT                   TVDIACGDFFGATRVGLPGEVERLGIYSSNAKSIAEIRVCFEVLSMNLYGSTIKVT"
XX
SQ   Sequence 1542 BP; 385 A; 318 C; 381 G; 458 T; 0 other;

AF110795  Length: 1542  December 21, 2001 14:52  Type: N  Check: 3437  ..

       1  gcctatgagg tagatccatt acacttgttg tattatgaat ccgttgatgt
      51  gccaaaggat actcttgctg gtaccttgtt gactcggatt gacgttcgag
     101  caaaggctgc aacctttgat agtgctgtat ggcgacaatg ggttagagat
     151  ggttgtctca aacccaaaat caaggtacgc atcactgcag ccacatcgtg
     201  tttctccggt attgtactgg gtgtatgttt tgatgcatac cggagaatcc
     251  cagcagctac aacaaagggt atcaccgcat cccttgtgac aggcttgccc
     301  aataccatct gggcaacacg tgacacctca gaggtcgaat gggatatcga
     351  tctcgcggca gtgtgtggac atactttctt tgcgttagaa gacacctttg
     401  gatacatgga ttttctgatc tatgtactca gaggtaatga aatcaccgcc
     451  gttgccgatt ggtcaatata tgtttccttt catgttgatt ggacacagga
     501  aagtatgttg gccacactta tccctacttt tgtatggccc ccaaagccga
     551  ctgatatatc tcttcttaag gaagtgtggg gaccataccg ttttacgctg
     601  gatggtaccg aggctaaagg aagttttgct ataatgcccg gtacagctat
     651  tccccatggg cagcagattg tgcgcacatt tccccgagtc gttgccgcac
     701  acttccgatc atggactgga aaggtcagga tgtccattca agaagtttct
     751  tctattttcc tgaccggaac atatatggtt ggtgtgtcct ggaatgctac
     801  tgcggatctt gccgacattg tcactcggaa acattggatt gtaaagtcca
     851  atgagatttt tgaagtggac ctatattgtc catatggtga gaatcccacc
     901  tttacgggcc aggctaatgg aaagccattc attatagtgc acaaacttgg
     951  tggaattgtt gggcccaagg actcagttgg gacgtttggt tttatgatac
    1001  acatacatgg tttgactggt gtatatagga acccaacgtt acacagtggt
    1051  gatcgttctg tggggagtgc ctggttccgc atcagtaaca ttgtcgatga
    1101  caatctggtg tttaacatac caggtagaat cgaagatatc attgcggctg
    1151  ctgggaaata tgatgtcaca aattatgtca atcctactag cttgctgttt
    1201  tcagtaaccg gattgcatgg tggtattata cgtctccata ttacgtggtg
    1251  tccaaatacc aatcttggtg agtcaaaggg tactttgaag tatatgcaat
    1301  atctgtacca tacggccact gagaatttct ttggcgacca agcaacacgt
    1351  gggatcattg accaggatgg tttcacagtt gatattgctt gtggtgattt
    1401  ctttggcgct acgagagttg gtttgcccgg ggaagttgaa agactcggca
    1451  tttacagttc gaatgccaag tccattgctg aaattagggt ttgttttgaa
    1501  gtgctatcca tgaatttgta cggtagcacc atcaaagtga cg