Sequence of DPV Raspberry ringspot virus
Raspberry ringspot virus putative coat protein mRNA, partial cds.
ACC No: AF111114
Dated: 2000-11-24 | Length: 1542 | CRC: -1519924471
!!NA_SEQUENCE 1.0
ID AF111114 standard; RNA; VRL; 1542 BP.
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AC AF111114;
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SV AF111114.1
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DT 02-JAN-2000 (Rel. 62, Created)
DT 24-NOV-2000 (Rel. 65, Last updated, Version 3)
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DE Raspberry ringspot virus putative coat protein mRNA, partial cds.
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KW .
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OS raspberry ringspot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Comoviridae;
OC Nepovirus; Subgroup A.
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RN [1]
RP 1-1542
RA Scott S.W., Zimmerman M.T., Jones A.T., Le Gall O.;
RT "Differences between the coat protein amino acid sequences of English and
RT Scottish serotypes of Raspberry ringspot virus exposed on the surface of
RT virus particles";
RL Virus Res. 68:119-126(2000).
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RN [2]
RP 1-1542
RA Scott S.W., Zimmerman M.T., Jones A.T., Le Gall O.;
RT ;
RL Submitted (04-DEC-1998) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology and Physiology, Clemson University, P.O. Box 340377, 120
RL Long Hall, Clemson, SC 29634-0377, USA
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DR SPTREMBL; Q9QAH3; Q9QAH3.
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FH Key Location/Qualifiers
FH
FT source 1. .1542
FT /db_xref="taxon:12809"
FT /organism="raspberry ringspot virus"
FT /strain="MX"
FT CDS <1. .>1542
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9QAH3"
FT /note="CP"
FT /product="putative coat protein"
FT /protein_id="AAF21937.1"
FT /translation="AYEVDPLHLLYYEEVTVPKDTLGGALLARIDVRAKAATFDSAVWR
FT QWVRDGCLKPRIKMRITAATSCFSGIVLGACLDAYRRIPATTKADFTASLVTGLPNAMW
FT ATRDTSEIEWDIDLAAVCGHTFFALEDTFGYMDFLIYVLRGNEITAVADWSMYVSFHVD
FT WTQESMSATLIPTFVWPPKPSDIFLFKEVWGPYHFSLDGTEAKVDLDIMPGMAIPRGHT
FT TVRTFPRVVAAHFRSWTGKIKMSIQEVSSIFLTGTYVVGVSWNVTADLADIVTRKHWIV
FT KSGEIFELDLYCPYGKNPTFTGLANGKPYIIVHKLGGIIGPKDSVGTFGFMIHIHGLTG
FT MYKNPTLHSGDRSVGSAWFRITNIADDNLVFNIPGKIEDMAAVTGNYDVTNYVNPTSLL
FT FSVTGLHGGVIRLHITWCPSVNLGEAKGTLKYMQYLYHTSTENFFGDQATRGIIDQDGF
FT TVDIACGDFFGATRVGLTGEIERLGIYSSNAKSIAEIRVSFEILSMNFYGSTIKVT"
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SQ Sequence 1542 BP; 382 A; 316 C; 378 G; 466 T; 0 other;
AF111114 Length: 1542 December 21, 2001 14:52 Type: N Check: 4824 ..
1 gcctatgagg tagatccact acatttgttg tattatgagg aagtcactgt
51 tccgaaggat acccttggtg gcgctttatt ggcccggata gatgttcgag
101 ctaaggctgc aacttttgac agtgccgtat ggcgacaatg ggtaagagat
151 ggttgtctca aacccagaat caaaatgcgc attactgcag ctacttcgtg
201 tttttccggt atagtgctgg gcgcatgcct cgatgcttat cgcagaattc
251 ctgcaactac gaaggcggat ttcaccgcct cccttgtaac aggactgcct
301 aatgccatgt gggcaacgcg cgatacttca gagatcgagt gggatatcga
351 tctcgcagca gtgtgcggac atactttttt tgcactcgag gatacctttg
401 ggtacatgga ttttttaatc tatgtgctca ggggtaatga aatcactgct
451 gtagctgatt ggtcgatgta cgtttccttt catgttgatt ggacgcagga
501 aagtatgtcg gccacactta tcccaacctt tgtatggccc ccgaaaccat
551 ctgacatatt tctttttaaa gaagtttggg gaccatacca tttctcgttg
601 gatggtaccg aggcaaaagt cgatcttgat ataatgcccg gtatggccat
651 cccccgtgga cacacaactg tgcgcacttt cccgcgtgtc gttgccgcac
701 acttccggtc atggactggg aagatcaaaa tgtccattca ggaggtgtct
751 tccatctttc tgactggaac atatgtggtt ggtgtgtcct ggaacgtcac
801 tgcagatctc gctgatattg tcactcggaa gcactggatt gtcaaatccg
851 gtgaaatttt tgagcttgat ctgtattgtc cctatggaaa aaaccctacc
901 ttcacaggcc tagccaatgg taaaccatat atcattgtgc acaagcttgg
951 aggaatcatt ggccccaaag attctgtagg aacgtttgga tttatgatac
1001 acatacacgg tctaactggc atgtataaaa atcctacgtt gcatagtggt
1051 gatcgttctg tggggagtgc ttggttccgt attaccaata tcgctgatga
1101 taatctggta tttaatatac caggcaaaat tgaggatatg gctgcggtta
1151 ctgggaatta tgatgtcacc aactatgtta atccaactag tttgctgttt
1201 tcagttactg gattgcatgg tggtgttata cgtctccata ttacgtggtg
1251 cccaagtgtg aatcttggtg aagcgaaagg tacattgaaa tatatgcaat
1301 atctgtacca tacatctacc gagaatttct ttggtgatca ggcaacgcgt
1351 ggaattatcg atcaggatgg ttttacggtt gacattgcct gtggcgattt
1401 ctttggtgct acaagggttg gactgactgg ggaaattgag agacttggta
1451 tttacagttc gaatgccaag tccatagctg aaattagggt ttcctttgaa
1501 atactatcca tgaatttcta tggtagtact ataaaggtga cg