Sequence of DPV Raspberry ringspot virus
Raspberry ringspot virus strain ORR putative coat protein mRNA, partial cds.
ACC No: AF116189
Dated: 2000-11-24 | Length: 1542 | CRC: -850792822
!!NA_SEQUENCE 1.0
ID AF116189 standard; RNA; VRL; 1542 BP.
XX
AC AF116189;
XX
SV AF116189.1
XX
DT 02-JAN-2000 (Rel. 62, Created)
DT 24-NOV-2000 (Rel. 65, Last updated, Version 3)
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DE Raspberry ringspot virus strain ORR putative coat protein mRNA, partial
DE cds.
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KW .
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OS raspberry ringspot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Comoviridae;
OC Nepovirus; Subgroup A.
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RN [1]
RP 1-1542
RA Scott S.W., Zimmerman M.T., Jones A.T., Le Gall O.;
RT "Differences between the coat protein amino acid sequences of English and
RT Scottish serotypes of Raspberry ringspot virus exposed on the surface of
RT virus particles";
RL Virus Res. 68:119-126(2000).
XX
RN [2]
RP 1-1542
RA Scott S.W., Zimmerman M.T., Jones A.T., Le Gall O.;
RT ;
RL Submitted (23-DEC-1998) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology and Physiology, Clemson University, P.O. Box 340377, 120
RL Long Hall, Clemson, SC 29634-0377, USA
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DR SPTREMBL; Q9QAH0; Q9QAH0.
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FH Key Location/Qualifiers
FH
FT source 1. .1542
FT /db_xref="taxon:12809"
FT /organism="raspberry ringspot virus"
FT /strain="ORR"
FT CDS <1. .>1542
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9QAH0"
FT /note="CP"
FT /product="putative coat protein"
FT /protein_id="AAF21984.1"
FT /translation="AYEVDPLHLLYYESVDVPKDTLAGTLLTRIDVRAKAATFDSAVWR
FT QWVRDGCLKPKIKVRITAATSCFSGIVLGACFDAYRRIPAATTKGITASLVTGLPNTVW
FT ATRDTSEVEWDIDLAAVCGHTFFALEDTFGYMDFLIYVLRGNEITAVADWSIYVSFHVD
FT WTQESMLATLIRTFVWPPKPTDISVFKEVWGPYHFTLDGTEAKESFVIMPGTAIPHGQQ
FT IVRTFPRVVAAHFRSWTGKVKMSIQEVSSIFLTGTYMVGVSWNATADLADIVTRKHWIV
FT KSNEIFEVDLYCPYGENPTFTGQANGKPFIIVHKLGGIVGPKDSVGTFGFMIHIHGLTG
FT VYRNPTLHSGDRSVGSAWFRINNIADDNLVFNIPGRIEDIIAAAGEVDVTNYVNPTSLL
FT FSVTGLHGGIIRLHITWCPNTNLGESKGTLKYMQYLYHTATENFFGDQATCGIIDQDGF
FT TVDIACGDFFGATRVGLPGEVERLGIYSSNAKSIAEIRVSFEVLSMNLYGSTIKVT"
XX
SQ Sequence 1542 BP; 388 A; 311 C; 381 G; 462 T; 0 other;
AF116189 Length: 1542 December 21, 2001 14:52 Type: N Check: 3754 ..
1 gcctatgagg tagatccatt acacttgttg tattatgaat ctgttgatgt
51 gccaaaggat actcttgctg gtaccttgtt gactcggatt gacgttcgag
101 caaaggctgc aacttttgat agtgctgtat ggcgacaatg ggttagagat
151 ggttgtctca aacccaaaat caaggtacgc atcactgcag ccacatcgtg
201 tttctccggt attgtactgg gtgcatgttt tgatgcatac cggagaattc
251 cagcagctac aacaaagggt atcaccgcat cccttgtgac aggcttgccc
301 aataccgtct gggcaacgcg tgacacctca gaggtcgaat gggatatcga
351 tctcgcggca gtgtgtggac atactttctt tgcgttagaa gacaccttcg
401 gatacatgga ttttctgatc tatgtactca gaggtaatga aatcaccgct
451 gttgctgatt ggtcaatata tgtttccttt catgttgatt ggacacagga
501 aagtatgttg gccacactta tccgtacttt tgtatggccc ccaaagccga
551 ctgatatatc tgtttttaag gaagtgtggg ggccatacca ttttacgctg
601 gatggtaccg aggccaaaga aagttttgtt ataatgcctg gtacagctat
651 tccccatggg cagcagattg tgcgcacatt tccccgagtc gttgccgcac
701 acttccgatc atggactgga aaggtcaaga tgtccattca agaagtttct
751 tctattttcc tgactggaac atatatggtt ggtgtgtcct ggaacgctac
801 tgcggatctt gccgatattg tcactcggaa acattggatt gtaaagtcca
851 atgagatttt tgaagtggac ctatattgtc catatggtga gaatcccacc
901 tttacgggcc aggctaatgg aaagccattc attatagtgc acaaacttgg
951 tggaattgtt gggcccaagg actcagttgg gacgtttggt tttatgatac
1001 acatacatgg cttgactggt gtatatagga acccaacgtt acatagtgga
1051 gatcgttctg tggggagtgc ctggttccgc atcaataaca ttgccgatga
1101 taatctggtg tttaacatac caggtagaat cgaagatatc attgcggctg
1151 ctggggaagt agatgtcaca aattatgtca atcctactag cttactgttt
1201 tcagtaaccg gattgcatgg tggtattata cgtctccata ttacgtggtg
1251 cccaaatacc aatcttggtg agtcaaaggg tactttgaag tatatgcaat
1301 atctgtacca tacggccact gagaatttct ttggcgacca agcaacatgt
1351 gggatcattg accaggatgg tttcacagtt gatattgctt gtggtgattt
1401 ctttggcgct acgagagttg gtttgcccgg ggaagttgaa agactcggca
1451 tttacagttc gaatgccaag tccattgctg aaattagggt ttcttttgaa
1501 gtgctatcca tgaatttata cggtagcacc atcaaagtga cg