Sequence of DPV Raspberry ringspot virus
Raspberry ringspot virus strain Tarvit putative coat protein mRNA, partial cds.
ACC No: AF116191
Dated: 2000-11-24 | Length: 1542 | CRC: 40603704
!!NA_SEQUENCE 1.0
ID AF116191 standard; RNA; VRL; 1542 BP.
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AC AF116191;
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SV AF116191.1
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DT 02-JAN-2000 (Rel. 62, Created)
DT 24-NOV-2000 (Rel. 65, Last updated, Version 3)
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DE Raspberry ringspot virus strain Tarvit putative coat protein mRNA, partial
DE cds.
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KW .
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OS raspberry ringspot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Comoviridae;
OC Nepovirus; Subgroup A.
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RN [1]
RP 1-1542
RA Scott S.W., Zimmerman M.T., Jones A.T., Le Gall O.;
RT "Differences between the coat protein amino acid sequences of English and
RT Scottish serotypes of Raspberry ringspot virus exposed on the surface of
RT virus particles";
RL Virus Res. 68:119-126(2000).
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RN [2]
RP 1-1542
RA Scott S.W., Zimmerman M.T., Jones A.T., Le Gall O.;
RT ;
RL Submitted (23-DEC-1998) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology and Physiology, Clemson University, P.O. Box 340377, 120
RL Long Hall, Clemson, SC 29634-0377, USA
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DR SPTREMBL; Q9QAG8; Q9QAG8.
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FH Key Location/Qualifiers
FH
FT source 1. .1542
FT /db_xref="taxon:12809"
FT /organism="raspberry ringspot virus"
FT /strain="Tarvit"
FT CDS <1. .>1542
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9QAG8"
FT /note="CP"
FT /product="putative coat protein"
FT /protein_id="AAF21986.1"
FT /translation="AYEVDPLHLLYYEEVTVPKDTLDGTLLARIDVRAKAATFDSAVWR
FT QWVRDGCLKPRVKMRVTAATSCYSGIVLGACLDAYRRIPATTKTDFTASLVTGLPNTMW
FT AMRDTSEIEWDIDLAAVCGHTFFALGDTFGYMDFLVYVLRGNEITAVADWSIYVSFHVD
FT WTQESMLATLIPTFVWPPKPTDISLLKEVWGPYRFTLDGTEAKGSFAIMPGTAIPHGQQ
FT IVRTFPRVVAAHFRSWTGKVRMSIQEVSSIFLTGTYMVGVSWNATADLADIVTRKHWIV
FT KSNEIFEVDLYCPYGENPTFTGQANGKPFIIVHKLGGIVGPKDSVGTFGFMIHIHGLTG
FT VYRNPTLHSGDRSVGSAWFRINNIADDNLVFNIPGKIENIIAAAGNYDVTNYVNPTILL
FT FSVTGLHGGIIRLHITWCPNTNLGESKGTLKYMQYLYHTATDNFFGDQATRGIIDQDGF
FT TVDIACGDFFGATRVGLPGEVERLGIYSSNAKSIAEIRVSFEVLSMNFYGSTIKVT"
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SQ Sequence 1542 BP; 377 A; 328 C; 381 G; 456 T; 0 other;
AF116191 Length: 1542 December 21, 2001 14:52 Type: N Check: 3419 ..
1 gcctatgagg tagacccact acatttgttg tattatgagg aagtcactgt
51 tccgaaggat acccttgatg gtactttact ggcccggata gatgttcgag
101 ctaaggctgc aacttttgat agtgctgtat ggcgacaatg ggtaagagat
151 ggttgtctca aacccagagt taaaatgcgt gttactgcag ctacctcgtg
201 ttattccggt atcgtgctgg gcgcatgcct cgatgcttat cgcagaattc
251 ctgcaactac gaagacggat ttcaccgcct cccttgtaac aggactgcct
301 aatactatgt gggcaatgcg cgatacttca gagatcgaat gggatatcga
351 tctcgcagca gtgtgcggac acactttttt tgcacttgga gacacctttg
401 ggtacatgga ctttttagtt tatgtgctca ggggcaatga aatcactgct
451 gttgccgatt ggtcaatata tgtttccttt catgttgatt ggacacagga
501 aagtatgttg gccacactta tccctacttt tgtatggccc ccgaaaccga
551 ctgatatatc tcttcttaag gaagtatggg ggccataccg ttttacgctg
601 gatggtaccg aggctaaagg aagttttgct ataatgcccg gtacagctat
651 tccccatggg cagcagattg tgcgcacatt tccccgagtc gttgccgcac
701 acttccgatc atggactggg aaggtcagga tgtccattca agaagtttcc
751 tctattttcc tgaccggaac atatatggtt ggtgtgtcct ggaatgctac
801 tgcggatctt gccgacattg tcactcggaa acattggatt gtaaagtcca
851 atgagatttt tgaggtggac ctatattgtc catacggtga gaatcccacc
901 tttacgggtc aggccaacgg aaagccgttc attatagtgc acaaacttgg
951 cggaatcgtt gggcccaagg actcagttgg gacgtttggt ttcatgatac
1001 acatacatgg cttgactggc gtgtatagga acccaacgtt acacagtggt
1051 gatcgctctg tggggagtgc ctggttccgc atcaataaca ttgccgatga
1101 taatctggtg tttaacatac caggtaaaat cgaaaatatc attgcggctg
1151 ctgggaatta tgatgtcaca aattatgtca atcctactat cttactgttt
1201 tcagttactg gattgcatgg tggtattata cgtctccata ttacgtggtg
1251 cccaaatacc aatcttggtg agtctaaggg tactttgaag tatatgcaat
1301 atctgtacca tacggccact gacaatttct ttggcgacca agcaacacgt
1351 gggatcatcg accaggatgg tttcacagtt gatattgctt gtggtgactt
1401 ctttggcgct acgagagttg gcttgcccgg ggaagttgaa agacttggca
1451 tttacagttc aaatgccaag tccattgctg aaattagggt ttcttttgaa
1501 gtgctatcca tgaatttcta cggtagcact atcaaagtga cg