Sequence of DPV Cucumber mosaic virus

Cucumber mosaic virus strain LS 3a protein and coat protein genes, complete cds.

ACC No: AF127976

Dated: 2000-03-03 | Length: 2198 | CRC: -952614914

                !!NA_SEQUENCE 1.0
ID   AF127976   standard; RNA; VRL; 2198 BP.
XX
AC   AF127976;
XX
SV   AF127976.1
XX
DT   22-JUL-1999 (Rel. 60, Created)
DT   03-MAR-2000 (Rel. 62, Last updated, Version 2)
XX
DE   Cucumber mosaic virus strain LS 3a protein and coat protein genes, complete
DE   cds.
XX
KW   .
XX
OS   cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC   Cucumovirus.
XX
RN   [1]
RP   1-2198
RX   MEDLINE; 99329200.
RA   Roossinck M.J., Zhang L., Hellwald K.H.;
RT   "Rearrangements in the 5' nontranslated region and phylogenetic analyses of
RT   cucumber mosaic virus RNA 3 indicate radial evolution of three subgroups";
RL   J. Virol. 73(8):6752-6758(1999).
XX
RN   [2]
RP   1-2198
RA   Roossinck M.J., Zhang L., Hellwald H.K.;
RT   ;
RL   Submitted (12-FEB-1999) to the EMBL/GenBank/DDBJ databases.
RL   Plant Biology Divsion, The Samuel Roberts Noble Foundation, P.O. Box 2180,
RL   Ardmore, OK 73402, USA
XX
DR   SPTREMBL; Q9WAB5; Q9WAB5.
DR   SPTREMBL; Q9WAB6; Q9WAB6.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2198
FT                   /db_xref="taxon:12305"
FT                   /organism="cucumber mosaic virus"
FT                   /strain="LS"
FT   CDS             97. .936
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q9WAB6"
FT                   /product="3a protein"
FT                   /protein_id="AAD45246.1"
FT                   /translation="MAFQGPSRTLTQQSSAASSDDLQKILFSPDAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPQLTSNNLLSFFKSGYDAGELRSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLKIYLADLGDKELSPIDGQCVTLHNHELPALISFQPTYDCPMELVGNRHRCFAVVVE
FT                   RHGYIGYGGTTASVCSNWQAQFSSKNNNYTHAAAGKTLVLPYNRLAEHSKPSAVARLLK
FT                   SQLNNVSSSRYLLPNVALNQNASGHESEILKESPPIAIGSPSASRNNSFRSQVVNGL"
FT   CDS             1221. .1877
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q9WAB5"
FT                   /product="coat protein"
FT                   /protein_id="AAD45247.1"
FT                   /translation="MDKSGSPNASRTSRRRRPRRGSRSASGADAGLRALTQQMLKLNRT
FT                   LAIGRPTLNHPTFVGSESCKPGYTFTSITLKPPEIEKGSYFGRRLSLPDSVTDYDKKLV
FT                   SRIQIRINPLPKFDSTVWVTVRKVPSSSDLSVAAISAMFGDGNSPVLVYQYAASGVQAN
FT                   NKLLYDLSEMRADIGDMRKYAVLVYSKDDKLEKDEIVLHVDVEHQRIPISRMLPT"
XX
SQ   Sequence 2198 BP; 496 A; 519 C; 522 G; 661 T; 0 other;

AF127976  Length: 2198  December 21, 2001 14:52  Type: N  Check: 7385  ..

       1  gtaatcttac cactttcttt tcacgtcgtg tcgcgtcagt ccacgctgtg
      51  tgtgtgtgtg tgttagttag tgtgtcgtgt ctagattacg aaggttatgg
     101  ctttccaagg tcccagtagg acgttaactc aacagtcctc ggcggcgtcg
     151  tctgacgact tacagaagat attattcagc cccgatgcca tcaagaagat
     201  ggctactgag tgtgacctag gtcgacatca ttggatgcgc gcggataacg
     251  ccatctctgt cagacctctc gttccccaat taaccagtaa caatttattg
     301  tctttcttta aatctgggta tgatgccggt gaattgcgct ctaaaggcta
     351  tatgagcgtt cctcaagtgc tgtgtgccgt taccaggacg gtttctacgg
     401  atgctgaggg ttctttgaaa atttatttgg ctgacctagg tgataaagaa
     451  ttatccccaa ttgatgggca atgtgttact ttacataatc atgagctccc
     501  tgctttgata tctttccaac ctacctacga ttgccccatg gaattagttg
     551  gtaatcggca tcgatgtttc gcggtagtcg ttgagagaca tggttatatt
     601  ggttacggtg gtaccactgc tagcgtgtgt agtaactggc aagctcagtt
     651  ttcttcaaag aataataatt acacacacgc cgctgctggt aagactcttg
     701  tgttgcctta caacagatta gccgagcatt cgaaaccgtc agccgtcgct
     751  cgcctgttga agtcgcagtt aaacaacgtt agctcatcgc gttatctttt
     801  accgaacgtt gctcttaatc aaaatgcgtc tgggcacgag tccgagattt
     851  taaaggaaag ccctcccatc gctataggga gtccgtccgc gtcccgtaac
     901  aatagcttca gatcgcaggt ggttaacggt ctttagtgtt ttgttacgtt
     951  gtacctatgt atatatatac tacgtttatc ttccgtatgt aaatacatgt
    1001  gagtctagag tcccgtgtga gttgtaacgg tagacatctg tgacgcgatg
    1051  ccgcttgaag atttcccatc tggggttagt aagtccacat cacagtttta
    1101  aggttcaatt ccttttgctc cctgttgggc cccttacttt ctcatggatg
    1151  cttctccgcg agttagcgtt tagttgttca cctgagtcgt gttttctttg
    1201  ttttgcgtct cagtgtgcct atggacaaat ctggatctcc caatgctagt
    1251  agaacctccc ggcgtcgtcg cccgcgtaga ggttctcggt ccgcttctgg
    1301  tgcggatgca gggttgcgtg ctttgactca gcagatgctg aaactcaata
    1351  gaaccctcgc cattggtcgt cccactctta accacccaac cttcgtgggt
    1401  agtgaaagct gtaaacccgg ttacactttc acatctatta ccctgaaacc
    1451  gcctgaaatt gagaaaggtt catattttgg tagaaggttg tctttgccag
    1501  attcagtcac ggactatgat aagaagcttg tttcgcgcat tcaaatcagg
    1551  attaatcctt tgccgaaatt tgattctacc gtgtgggtta cagttcggaa
    1601  agtaccttca tcatccgatc tttccgtcgc cgccatctct gctatgtttg
    1651  gcgatggtaa ctcaccggtt ttggtttatc agtatgctgc gtccggagtt
    1701  caggccaaca ataagttact ttatgacctg tccgagatgc gtgctgatat
    1751  cggcgacatg cgtaagtacg ccgtcctggt ttactcgaaa gacgataaac
    1801  tagagaagga cgagattgta cttcatgtcg acgtcgagca tcaacgaatt
    1851  cctatctcac ggatgctccc gacttagtcc gtgtgtttac cggcgtccga
    1901  agacgttaaa ctacactctc aatcgcgagt gctgagttgg tagtgctgct
    1951  ccaaactgcc tgaagtccct aaacgtgttg ttgcgcgggg aacgggttgt
    2001  ccatccagct tacggctaaa atggtcagtc gtgtctttca cacgccgatg
    2051  tcttacaaga tgtcgaggta cccttgaaat cacctcctag atttcttcgg
    2101  aagggcttcg tgagaagctc gtgcacggta atacactgat attaccaaga
    2151  gtgcgggtat cgcctgtggt tttccacagg ttctccataa ggagacca