Sequence of DPV Tomato ringspot virus
Tomato ringspot virus isolate Raspberry RNA1 polyprotein gene, partial cds.
ACC No: AF135409
Dated: 1999-08-24 | Length: 2958 | CRC: 292533127
!!NA_SEQUENCE 1.0
ID AF135409 standard; genomic RNA; VRL; 2958 BP.
XX
AC AF135409;
XX
SV AF135409.1
XX
DT 24-AUG-1999 (Rel. 60, Created)
DT 24-AUG-1999 (Rel. 60, Last updated, Version 1)
XX
DE Tomato ringspot virus isolate Raspberry RNA1 polyprotein gene, partial cds.
XX
KW .
XX
OS Tomato ringspot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Comoviridae;
OC Nepovirus; Subgroup C.
XX
RN [1]
RP 1-2958
RA Wang A., Sanfacon H.;
RT "Diversity in the coding regions for the coat protein, VPg, protease and
RT putative putative RNA-dependent RNA polymerase among tomato ringspot
RT nepovirus isolates";
RL Unpublished.
XX
RN [2]
RP 1-2958
RA Wang A., Sanfacon H.;
RT ;
RL Submitted (17-MAR-1999) to the EMBL/GenBank/DDBJ databases.
RL Pacific Agri-Food Research Centre, 4200 Highway 96, Summerland, British
RL Columbia V0H 1Z0, Canada
XX
FH Key Location/Qualifiers
FH
FT source 1. .2958
FT /chromosome="RNA1"
FT /country="USA:Washington"
FT /db_xref="taxon:12280"
FT /mol_type="genomic RNA"
FT /organism="Tomato ringspot virus"
FT /isolate="Raspberry; Rasp-1"
FT CDS <1. .2958
FT /codon_start=1
FT /db_xref="GOA:Q9QRA7"
FT /db_xref="InterPro:IPR001205"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="UniProtKB/TrEMBL:Q9QRA7"
FT /note="cleaved into VPg, protease, putative RNA-dependent
FT RNA-polymerase"
FT /product="polyprotein"
FT /protein_id="AAD50651.1"
FT /translation="STIPSGSYADVYNARNMTRVFRPQSVQGSSLAEAQFNESHAVNML
FT VRIDLPDGNIISACRFRGKSLALTKHQALTIPPGAKIHIVYTDNNGNTKAPLTHFFQPT
FT GPNGEHFLRFFNGTEVCIYSHPQLSALPGAPQNYFLKDVEKISGDIAIKGCGIKLGRTS
FT VGECVGVKDNEPVLNHWRAVAKVRTTKITIDNYSEGGDYSNDLPTSIISEYVNSPEDCG
FT ALLVAHLEGGYKIIGMHVAGSSYPVEVDGVQMPRYISHASFFPDYSSFAPCQSSVIKSL
FT IQEAGVEERGVSKVGHIKDPAETPHVGGKTKLELVDEAFLVPSPVEVKIPSILSKDDPR
FT IPEAYKGYDPLGDAMEKFYEPMLDLDEDVLESVMADMYDEFYDCQTTLRIMSDDEVING
FT SDFGFKIEAVVKGTSEGYPFVLSRRPGEKGKARFLEELEPQPGDTKPKYKLVVGTEVHS
FT AMVAMEQQARTEVPLLIGMDVPKDERLKPSKVLEKPKTRTFVVLPMHYNLLLRKYVGIL
FT CSSMQVNRHRLACAVGTNPYSRDWTDIYQRLAEKNSVALNCDYSRFDGLLNYQAYVHIV
FT NFINKLYNDEHSIVRGNLLMAMYGRWSVCGQRVFEVRAGMPSGCALTVIINSLFNEMLI
FT RYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKTILAKYKVTITD
FT GSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINPQGNILKSLF
FT LNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSP
FT VKFLEVDVPDAKFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKANEGG
FT LYFPVDYGEGTGQQATEASIRAYRRLKDHRVRHMRDSWNEGKTIVFRCEGPFVSGWAAA
FT ISFGTSVGMNAQDLLINYGIQGGAHKEYLGRYFVGARFKELERYDRPFQSRIIAS"
XX
SQ Sequence 2958 BP; 757 A; 606 C; 723 G; 872 T; 0 other;
AF135409 Length: 2958 February 9, 2006 14:22 Type: N Check: 7083 ..
1 tcgacgattc cctccggtag ttatgcagac gtgtacaatg cgcgcaacat
51 gacacgtgtt ttccgcccac aatctgtaca gggttcttct ttggcggaag
101 cgcaatttaa tgaatcgcac gctgtgaata tgttagtgcg aattgattta
151 cctgatggca acattatttc tgcctgcagg tttcgcggaa agtctttggc
201 tttgactaaa catcaggcct taaccatacc gccaggtgct aaaatccata
251 ttgtatatac tgacaacaat ggaaatacca aagcaccgct gactcatttt
301 ttccaaccta ctggacccaa tggagaacat tttttgagat tcttcaacgg
351 gacagaggtt tgtatttatt cccaccctca actttcagct ttgcctggcg
401 ctccacaaaa ttatttcttg aaagatgtgg aaaaaatatc tggtgacata
451 gccattaaag gttgtggcat caagctaggt agaaccagcg ttggcgagtg
501 tgttggtgtt aaggacaatg aacccgtctt aaatcactgg cgcgctgtcg
551 cgaaggtccg caccaccaag atcactatcg ataattattc agagggtggt
601 gattattcca atgatcttcc tacgtccatc atctctgagt acgtaaattc
651 accagaagat tgtggcgcgc ttttagtcgc ccatcttgaa ggtggttaca
701 aaatcatagg gatgcacgtg gcgggatcct cttatcctgt cgaggttgat
751 ggagtgcaga tgccaagata catatctcat gcctccttct tccccgatta
801 ttcttctttt gctccttgcc agtctagtgt tatcaaatct ctaattcaag
851 aggctggcgt tgaggagcgt ggggtttcta aagtgggaca tattaaagat
901 cctgctgaga cgccccatgt tggagggaaa actaagcttg aattggttga
951 tgaagccttc ttggtgccat caccagttga ggtaaagatt ccctccattc
1001 tgtctaaaga tgacccgcgc attcctgaag cgtataaggg ttatgatcca
1051 ttgggcgatg ccatggagaa gttttatgag cccatgttgg atctggacga
1101 agatgtcttg gagagcgtta tggcagatat gtatgatgaa ttctatgatt
1151 gccaaacgac tctccgtatt atgtctgatg acgaagttat caatggcagc
1201 gattttggtt tcaaaattga agccgttgtc aaaggtactt ctgaaggcta
1251 cccgttcgtt ttgagtcggc gaccgggcga gaagggcaaa gctcgctttt
1301 tagaagagct tgaaccccaa ccaggtgaca ctaagcctaa atataaactg
1351 gttgtgggca ctgaggtgca ttctgctatg gtggcgatgg aacaacaggc
1401 gcgtactgaa gttcctttgc ttattggtat ggatgttccg aaggatgaga
1451 gactcaaacc gtctaaggtg ttggagaagc cgaagacgcg tacattcgtt
1501 gttctcccaa tgcactataa cttgctgctg cgtaagtatg tgggaatttt
1551 gtgttctagc atgcaagtta ataggcatcg tctagcatgt gctgtgggca
1601 ctaacccata ttcgcgtgat tggacggaca tttatcagcg cctggctgag
1651 aaaaattcag tggccttgaa ttgtgattat agccgctttg atgggctcct
1701 caattaccag gcatatgtgc atattgttaa ttttattaat aaattgtaca
1751 acgatgaaca ttctatcgtg cgtggcaatc ttttgatggc tatgtatggt
1801 aggtggagtg tgtgtgggca gagagttttc gaagtccgcg ctggcatgcc
1851 ctctgggtgt gcgctcaccg tgatcatcaa ttcacttttt aacgaaatgt
1901 tgatcaggta tgtttatcgc atcaccgtac cacgccccct tgtaaataat
1951 tttaaacagg aggtgtgttt gattgtttat ggtgatgata atttaatttc
2001 tattaagccg gacaccatga aatattttaa tggtgagcaa atcaaaacca
2051 ttctggctaa atataaagtt accattactg atggcagtga taagaactca
2101 cctgttctta gagccaaacc cttgaaacag ctcgattttt tgaagagagg
2151 tttcagggtt gaaagtgatg ggagggtgct tgccccttta gatttgcaag
2201 ctatctattc ttccctgtat tatatcaatc cgcagggaaa tatattaaaa
2251 tctttgtttt tgaatgctca agtcgctttg agagagttat atctccatgg
2301 cgatgttgag caatttactg ctgtcaggaa tttttacgtc aatcaaattg
2351 gcggaaattt cttgagtcta ccccagtgga ggcactgcgc ttcgttccat
2401 gatgaacaat attctcagtg gaagccgtgg tctcccgtta aattcttgga
2451 ggtagatgtg cccgatgcta aatttttaca gcataaggcg ccagctactg
2501 ccctctcgat tgttgctgat aggcttgctg ttgcaggacc tggctggcgt
2551 aataaagatc cagacaggta tctgttagtg agccttacca gcttgaaagc
2601 aaatgagggt ggattatact tccccgtaga ctacggggag ggtacagggc
2651 agcaagccac ggaagcttcc attagagctt atcgtaggct aaaggatcat
2701 cgcgtacgcc atatgcgcga ttcctggaat gagggaaaga caatcgtgtt
2751 ccgatgcgaa ggtccctttg tttcaggatg ggcagctgcc atttccttcg
2801 gtactagcgt tggaatgaat gcccaagatc tcttaatcaa ttatggtata
2851 caaggtggcg cccacaagga atatctggga cgctactttg ttggtgctcg
2901 ttttaaagag ctggagaggt atgaccgacc ttttcagtct cgtataattg
2951 cgagctaa