Sequence of DPV Cauliflower mosaic virus
Cauliflower mosaic virus isolate Xinjiang, complete genome.
ACC No: AF140604
Dated: 2005-04-15 | Length: 8060 | CRC: -76480497
!!NA_SEQUENCE 1.0
ID AF140604 standard; circular genomic DNA; VRL; 8060 BP.
XX
AC AF140604;
XX
SV AF140604.1
XX
DT 07-JUN-1999 (Rel. 59, Created)
DT 15-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE Cauliflower mosaic virus isolate Xinjiang, complete genome.
XX
KW .
XX
OS Cauliflower mosaic virus
OC Viruses; Retroid viruses; Caulimoviridae; Caulimovirus.
XX
RN [1]
RP 1-8060
RA Fang R., Wu X., Bu M., Tian Y., Cai F., Mang K.;
RT "Complete nucleotide sequence of cauliflower mosaic virus (Xinjiang
RT isolate) genomic DNA";
RL Ping Tu Hsueh Pao 1:247-256(1985).
XX
RN [2]
RP 1-8060
RA Fang R., Wu X., Bu M., Tian Y., Cai F., Mang K.;
RT ;
RL Submitted (06-APR-1999) to the EMBL/GenBank/DDBJ databases.
RL Plant Biotechnology, Institute of Microbiology, Chinese Academy of
RL Sciences, Beiyijie, Zhongguancun, Beijing 100080, P. R. China
XX
DR EPD; EP07015; CAMV_35MJ.
XX
FH Key Location/Qualifiers
FH
FT source 1. .8060
FT /db_xref="taxon:10641"
FT /mol_type="genomic DNA"
FT /organism="Cauliflower mosaic virus"
FT /isolate="Xinjiang"
FT CDS 13. .303
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q9WI31"
FT /gene="ORF7"
FT /product="ORF7 protein"
FT /protein_id="AAD37343.1"
FT /translation="MNRSKTITQEGKTSSKYQRVLNSKDKRSFKIKHSSLTPVTDRFTT
FT VRFQNNIECVYANFDSQLKSSYDGRSKKIKNLSLKNLRCYETFLRKYLLEQ"
FT CDS 365. .1348
FT /codon_start=1
FT /db_xref="GOA:Q9WI32"
FT /db_xref="InterPro:IPR002626"
FT /db_xref="UniProt/TrEMBL:Q9WI32"
FT /gene="ORF1"
FT /product="ORF1 protein"
FT /protein_id="AAD37337.1"
FT /translation="MDLYPEENTQSEQSQNSENNMQIFKSENSDGFSSDLMISNDQLKN
FT ISKTQLTLEKEKIFKMPNVLSQVMKKAFSRKNEILYCVSTKELSVDIHDATGKVYLPLI
FT TKEEINKRLSSLKPEVRKTMSIVHLGAVKILLKAQFRNGIDTPIKIALIDDRINSRKDC
FT LLGAAKGNLAYGKFMFTVYPKFGISLNTQRLNQTLSLIHDFENKNLMNKGDKVMTITYI
FT VGYALTNSHHSIDYQSNATIELEDVFQEIGNVQQSEFCTIQNDECNWAIDIAQNKALLG
FT AKTKTQIGNSLQIRNSASSSNTENELARVSQNIDLLKNKLKEICGE"
FT CDS 1345. .1824
FT /codon_start=1
FT /db_xref="GOA:Q9WI33"
FT /db_xref="InterPro:IPR004917"
FT /db_xref="UniProt/TrEMBL:Q9WI33"
FT /gene="ORF2"
FT /product="aphid transmission helper factor"
FT /protein_id="AAD37338.1"
FT /translation="MSITGQPHVYKKDTIIRLKPLSLNSNNRSYVFSSSKGNIQNIINH
FT LNNLNEIVGRSLLGIWKINSYFGLSKDPSESKSKNPSVFNTAKTIFKSGGVDYSSQLKE
FT IKSLLEAQNTRIKNLEKAIQSLDNKIEPEPLTKEEVKELKESINSIKEGLKNIIG"
FT CDS 1826. .2215
FT /codon_start=1
FT /db_xref="GOA:Q9WI34"
FT /db_xref="InterPro:IPR004986"
FT /db_xref="UniProt/TrEMBL:Q9WI34"
FT /gene="ORF3"
FT /product="ORF3 protein"
FT /protein_id="AAD37339.1"
FT /translation="MANLNQIQKEVSEILSDQKSMKTDIKAILELLGSQNPIKESLEAV
FT AAKIVNDLTKLINDCPCNKEILEALGKQPKDQLVEQPKEKGKGLNLGKYSYPNYGVGNE
FT ELGSSGNPKALTWPFKAPAGWPNQF"
FT CDS 2197. .3708
FT /codon_start=1
FT /db_xref="GOA:Q9WI35"
FT /db_xref="InterPro:IPR001878"
FT /db_xref="InterPro:IPR001988"
FT /db_xref="UniProt/TrEMBL:Q9WI35"
FT /gene="ORF4"
FT /product="capsid protein"
FT /protein_id="AAD37340.1"
FT /translation="MAESILDRTINRFWYKLGDDCLSESQFNLMIRLMEESLDGDQIID
FT LTALPSDNLQVEQVTTTTEDSISEESEFLLAIGEITEEESEFLLAIGETSEEESDSGEE
FT PEFEQVRMDRTGGTEIPKEEDGGEPSRYNERKRKTPEDRYFPTQPKTIPGQKQTTMGML
FT NIDCQANRRTLIDDWAAEIGVIVKTNREDYLDPETILLLMEHKTSGMAKELIRNTRWNC
FT TTGDIIEQVIDAMYTMFLGLNYSDNKVAEKIEEQEKAKIRMTKLQLCDICYLEEFTCDY
FT EKNMYKTELADFPGYINQYLSKIPIIGEKALTRFRHEANGTSIYSLGFAAKIVKEELSK
FT ICDLSKKQKKLKKFNKKCCSIGEASVEYGCKKTSKKKYHKRYKKKYKAYKPYKKKKKFR
FT YGKYFKPKEKKGSKQKYCPKGKKDCRCWICNIEGHYANECPNRQVSEKAHILQQAEKLG
FT LQPIEEPYEGVQEVFILEYKEEEEETSTEEDDGSSTSEDSDSDSD"
FT CDS 3665. .5689
FT /codon_start=1
FT /db_xref="GOA:Q9WI36"
FT /db_xref="InterPro:IPR000477"
FT /db_xref="InterPro:IPR000588"
FT /db_xref="UniProt/TrEMBL:Q9WI36"
FT /gene="ORF5"
FT /product="reverse transcriptase"
FT /protein_id="AAD37341.1"
FT /translation="MDHLLQKTQIQTQTEQVMNITNPNSIYIKGRLYFKGYKKIELHCF
FT VDTGASLCIASKFVIPEEHWINAERPIMVKIADGSSITINKVCRDIDLIIAGEIFHIPT
FT VYQQESGIDFIIGNNFCQLYEPFIQFTDRVIFTKDRTYPVHIAKLTRAVRVGTEGFLES
FT MKKRSKTQQPEPVNISTNKIAILSEGRRLSEEKLFITQQRMQKIEELLEKVCSENPLDP
FT NKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPA
FT FLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGF
FT WQVLPDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDD
FT ILVFSNTEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHI
FT LEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTL
FT YMQKVKKNLQGFPPLHRPLPEEKLIIETDASDDYWGGMLKAIQINEGTNTELICRYASG
FT SFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLG
FT RNIRWQAWLSHYSFDVEHIKGTDNRFADFLSREFNRVNS"
FT CDS 5793. .7367
FT /codon_start=1
FT /db_xref="GOA:Q9WI37"
FT /db_xref="InterPro:IPR002609"
FT /db_xref="UniProt/TrEMBL:Q9WI37"
FT /gene="ORF6"
FT /product="inclusion body protein"
FT /protein_id="AAD37342.1"
FT /translation="MENIEKLLMQEKILMLELDLVRAKISLARANGSSQQGELSLHRET
FT PEKEVAVHSALATFTPTQVKAIPEQTAPGKESTNPLMVSILPKDMNSVQTDKRLVTPAD
FT FLRPHQGIPIPYKPGPSSSVAPLRAESGIQTPRINYYVVYNGPHAGIYDDWGSAKAATN
FT GVSGVAHKKFANITEAREAADKYTTSQQTDRLNFIPKGEARLKPISFAKALLSPPKQKT
FT QWLTLGTKKPSSDPSPKEVSFEPEISMSDFLYLYDLGRMFDGDGDNTVFTTDNESISLF
FT NFRKNADPQMIRETFQAGLIRTIYPSANLQEIKYLPKKIKDAVKKFRTNCIKNTEKDVF
FT LKIRSTIPVWTIEGLLHKPRHVIEIGVSKKVVPKESKAMQSKIQMEDLTELATKTGEQF
FT IQSLLKLNEKNKIFVNMVEHDVLVYSKNLKETTAEDQRAIETFQKRVISGSLLGFHCPS
FT ICHFIKRTVEKEGGAYQCHQCDKGKAIVEDKPADSGPADSLGSTTTKENVEKEDAVSTT
FT TSSKQVD"
XX
SQ Sequence 8060 BP; 2964 A; 1647 C; 1576 G; 1873 T; 0 other;
AF140604 Length: 8060 April 19, 2005 08:54 Type: N Check: 3303 ..
1 ggtatcagag ccatgaatag gtctaagacc ataactcaag agggtaaaac
51 ctcatcaaaa taccaaagag ttcttaactc taaagataaa agatctttca
101 agatcaaaca tagttccctc acaccggtga ccgacaggtt taccaccgta
151 aggtttcaga acaacatcga atgcgtttac gccaacttcg actctcagct
201 caagtcgtcg tacgatggta gatctaaaaa gatcaagaat ctaagcctta
251 aaaatcttag atgctacgaa accttcctca ggaagtacct tttggaacaa
301 taaaatctct ctgagaatag tactctattg agtatccaca gaaaaaataa
351 tcttctgtgt tgagatggat ttgtatccag aagaaaatac ccaaagcgag
401 caatcgcaaa attctgaaaa taatatgcaa atatttaaat cagaaaattc
451 ggatggattc tcctccgatc taatgatctc taatgatcaa ttaaaaaata
501 tctcaaaaac ccaattaact ttggagaaag aaaagatatt taaaatgcct
551 aacgttttat ctcaagttat gaaaaaagcg tttagcagga aaaacgagat
601 tctctactgc gtctcgacaa aggaattatc agtggacatt catgatgcca
651 caggtaaggt atatcttccc ttaatcacta aggaggagat aaacaaaaga
701 ctttccagcc tgaaaccgga agtcagaaag accatgtcca tagtacatct
751 tggagcggtc aaaatattgc ttaaagctca atttcgaaat gggattgata
801 ccccaatcaa aattgcttta atcgatgata gaattaattc tagaaaagat
851 tgtctacttg gtgcagccaa aggtaatcta gcatacggta agtttatgtt
901 tactgtatac cccaagtttg gaataagcct taatacccaa agacttaacc
951 aaaccctaag cctgattcat gattttgaaa ataaaaatct catgaacaaa
1001 ggtgataaag ttatgaccat aacctatatt gtaggatatg cattaactaa
1051 tagtcatcat agcatagatt atcaatcgaa tgctacaatt gaactagaag
1101 acgtatttca agaaattgga aatgtccagc aatctgagtt ctgtacaata
1151 cagaatgatg aatgcaattg ggccattgat atagcccaaa acaaagcctt
1201 attaggagct aaaaccaaaa cccaaattgg taatagtctt caaataagaa
1251 acagtgcttc atcctctaat actgaaaatg aattagctag ggtaagccaa
1301 aacatagatc ttttaaagaa taaattaaaa gaaatctgtg gagaatgagc
1351 attacgggtc aaccgcatgt ttataaaaaa gatactatta ttagactaaa
1401 accattgtct cttaatagta ataatagaag ttatgttttt agttcctcaa
1451 aagggaacat tcaaaatata attaatcatc ttaacaacct caatgagatt
1501 gtaggaagaa gcttactcgg aatatggaag atcaactcat acttcggact
1551 aagcaaagac ccttcggagt ccaaatcaaa aaacccgtca gtttttaata
1601 ctgcaaaaac catttttaag agtggggggg ttgattactc gagccaacta
1651 aaggaaataa aatccctttt agaagcccaa aatactagaa ttaaaaatct
1701 agaaaaagca attcaatcct tagataataa gattgaacca gagcccttaa
1751 ctaaagaaga agttaaagag cttaaagaat cgattaactc gatcaaagaa
1801 ggattaaaga atattattgg ctaaaatggc taatcttaat caaatccaaa
1851 aagaagtctc tgaaatcctc agtgaccaaa aatccatgaa aacggatatt
1901 aaagctatct tagaattatt aggatcccaa aatcctatta aagaaagctt
1951 agaagccgtt gcagcgaaaa tcgttaatga cttaaccaag ctcatcaatg
2001 attgtccttg taacaaagaa atactagaag ccttaggtaa acaacctaaa
2051 gaccaactag tagaacaacc taaagaaaag ggcaaaggcc ttaatcttgg
2101 aaaatactct taccccaatt acggagtagg aaatgaagaa ttaggatcct
2151 ctggaaaccc taaagcttta acctggccct tcaaagctcc agcaggatgg
2201 ccgaatcaat tttagaccga actattaata ggttctggta taaactggga
2251 gatgattgtc tctcagaaag tcaatttaac cttatgataa ggttaatgga
2301 agagtccctt gacggggacc aaattattga tctaaccgct ctacctagtg
2351 ataatttgca ggtcgaacag gttacgacaa ctaccgaaga ctcgatctcg
2401 gaagaatcag aattccttct agcaatagga gagataactg aagaagaatc
2451 agaattcctt ctagcaatag gagaaacatc tgaagaagaa agcgattcag
2501 gagaagaacc tgaattcgaa caagttcgca tggatcgaac aggaggaacg
2551 gagattccta aagaagaaga tggcggagaa ccatccagat ataatgagag
2601 aaagagaaag accccggagg accggtactt tccaactcaa ccaaagacca
2651 tcccaggcca aaaacaaacg accatgggaa tgctcaacat tgactgccaa
2701 gccaatcgaa gaactctaat cgacgattgg gcggcggaaa tcggagtgat
2751 agtcaaaacc aatagagaag actatcttga tccagaaaca atcctacttc
2801 tgatggaaca taaaacatca ggaatggcca aggagttaat ccgaaacaca
2851 agatggaact gcactaccgg cgacatcata gaacaggtga tcgatgcaat
2901 gtacaccatg ttcctaggat taaattactc cgacaacaag gttgctgaga
2951 agattgaaga gcaagagaag gccaaaatca gaatgaccaa gcttcagctc
3001 tgcgatatct gctaccttga agaatttaca tgtgactacg agaagaacat
3051 gtataagaca gaactggcgg atttcccagg atatatcaac cagtacctgt
3101 caaaaatccc catcattgga gaaaaagcgc taacacgctt taggcatgaa
3151 gccaacggaa ccagcatcta cagcttaggt ttcgcggcaa agatagtaaa
3201 agaagaacta tctaaaatct gcgacttatc caagaagcag aagaagttga
3251 agaaattcaa caagaaatgc tgtagcatcg gagaagcttc agtagaatat
3301 ggatgcaaga agacatccaa gaagaagtat cataagagat acaagaaaaa
3351 atataaggct tacaaacctt ataagaagaa gaagaaattc cgatacggaa
3401 aatacttcaa gcccaaagaa aagaagggct ctaagcaaaa gtattgccca
3451 aaaggcaaga aagattgcag gtgttggatc tgcaacatag aaggccatta
3501 tgccaacgaa tgtcctaatc gacaagtctc ggagaaggct cacatccttc
3551 aacaagcaga aaaattgggc ctccagccca tagaagaacc ctacgaagga
3601 gttcaagaag tattcattct agaatacaaa gaagaggaag aagaaacctc
3651 taccgaagaa gatgatggat catctacttc agaagactca gattcagact
3701 cagactgagc aggtgatgaa catcaccaat cccaattcga tctacatcaa
3751 gggaagactc tacttcaagg gatacaagaa gatagagctt cactgctttg
3801 tagacacggg agcaagttta tgcatagcat ccaaattcgt cataccagaa
3851 gaacattgga tcaatgcaga aagaccaatc atggtcaaaa ttgcagatgg
3901 aagctcgatc accatcaaca aagtctgcag agacattgac ctgatcatag
3951 ccggagaaat attccatatt cctaccgtct atcaacagga aagtggaatc
4001 gatttcatca tcggcaacaa cttctgtcag ttgtatgaac ctttcataca
4051 atttacagat agagttatct tcacaaagga cagaacatat cctgttcata
4101 ttgcgaagtt aacaagagca gtgcgagtag gcacagaagg atttctagaa
4151 tcaatgaaga aacgttcaaa gactcagcaa ccagagccag tgaacatttc
4201 aacaaataaa attgctattc tttcagaggg gaggaggtta tcagaagaaa
4251 aacttttcat cactcagcaa agaatgcaaa aaatcgaaga actacttgag
4301 aaagtatgtt cagaaaatcc attagatcct aacaagacta agcaatggat
4351 gaaagcttca atcaagctca gcgacccaag caaagctatc aaggttaaac
4401 ccatgaagta tagcccaatg gatcgtgaag aatttgacaa gcaaatcaaa
4451 gagttactgg accttaaagt cattaagccc agtaaaagcc ctcacatggc
4501 accagccttc ttggtcaaca acgaagctga gaagcgaaga ggaaagaaac
4551 gtatggtagt caactacaaa gctatgaaca aagccactgt aggagacgct
4601 tacaatcttc ccaacaaaga cgagttactt acactcattc gaggaaaaaa
4651 gatcttctct tccttcgact gtaagtcagg attctggcag gttctgccag
4701 atcaagaatc aagacctcta acggcattca catgtccaca aggtcactat
4751 gaatggaatg tggttccttt cggcttaaag caagcaccat ccatattcca
4801 aaggcacatg gacgaagcat tccgtgtgtt cagaaagttc tgttgcgtgt
4851 atgtcgacga cattctcgta ttcagtaaca ctgaagaaga tcacctactt
4901 cacgtagcaa tgatcttaca aaagtgcaat caacatggaa ttatcctttc
4951 caagaagaaa gcacaactct tcaagaagaa gataaatttc cttggtctag
5001 aaatagatga aggaacacac aagcctcaag gacatatctt ggaacacatc
5051 aataaattcc cagataccct tgaagacaaa aagcaacttc agagattctt
5101 aggcatacta acatatgcct cggattatat cccgaagcta gctcaaatca
5151 gaaagcctct gcaagccaag cttaaagaaa acgttccatg gaaatggaca
5201 aaggaggaca ccctctacat gcaaaaggtg aagaaaaatc tgcaaggatt
5251 tcctccacta catcgtccct taccagaaga aaagctgatc atcgagaccg
5301 acgcatcaga tgactactgg ggaggtatgt taaaagctat ccaaattaac
5351 gaaggtacta atactgagtt aatttgcaga tacgcatctg ggagctttaa
5401 agctgcagaa aagaattacc acagcaatga caaagagaca ttggcggtaa
5451 taaatactat aaagaaattt agtatttatc taactcctgt tcattttctg
5501 attaggacag ataatactca tttcaagagt ttcgttaatc tcaattacaa
5551 aggggattcg aaacttggaa gaaacatcag atggcaagcc tggcttagcc
5601 actattcatt tgatgttgaa cacattaaag gaaccgacaa ccgctttgcg
5651 gacttccttt caagagaatt caatagggtt aattcctaat tgaaatccaa
5701 agataagatt cccacacact tgtggctgat atcaaaaggc tactgcctat
5751 ataaacacat ctctggagac tgagaaaatc agacctccaa gcatggagaa
5801 catagaaaaa ctcctcatgc aagagaaaat actaatgcta gagctcgatc
5851 tagtaagagc aaaaataagc ttagcaagag ctaacggctc ttcgcaacaa
5901 ggagaactct ctctccaccg tgaaacaccg gaaaaagaag tagcagttca
5951 ttctgcactg gctactttta cgccaactca agtaaaagct attccagagc
6001 aaacggctcc tggtaaagaa tcaacaaatc cgttgatggt tagtatctta
6051 ccaaaagata tgaattcggt acagaccgat aaaaggcttg ttacgccagc
6101 ggacttctta cgtccacatc agggaattcc aatcccatat aaacctggac
6151 ctagcagttc agttgctcct ctcagagcag aatcggggat tcaaacccct
6201 cgtatcaact actacgttgt atataacgga cctcatgccg gaatatatga
6251 cgactgggga agtgcaaagg cggcgacaaa tggagtctcc ggagtggcac
6301 acaaaaaatt tgccaatatt acagaggcaa gggaagcagc tgacaagtac
6351 actacaagtc agcaaacgga taggctcaac ttcatcccca aaggtgaagc
6401 ccggcttaag cccataagct ttgcaaaggc cctcctaagc ccgccaaagc
6451 aaaagacgca atggctcact ctaggaacta aaaaacccag cagtgatcca
6501 agcccaaaag aagtctcctt tgaaccggag atctcgatga gcgacttcct
6551 ctatctctac gacctaggaa gaatgttcga tggagacggc gacaacaccg
6601 tctttacaac tgataatgag agcatcagtc tcttcaattt caggaagaat
6651 gctgatccac agatgatcag agaaacgttc caggcaggac taatcagaac
6701 gatctacccc agtgcaaatc tgcaggagat caaatatctt cccaaaaaga
6751 ttaaagatgc agtcaagaag ttcaggacta actgcatcaa aaatacagag
6801 aaggatgtct ttctcaagat cagaagtact attccagtat ggacgattga
6851 aggactactt cacaaaccaa ggcatgtcat tgagatcgga gtctcaaaga
6901 aagtagtgcc aaaagaatca aaggctatgc agtccaagat tcaaatggag
6951 gatctaacag agttagccac caagactgga gaacagttca tacagagctt
7001 gcttaagctc aacgagaaga ataagatctt cgtcaacatg gtagaacacg
7051 acgtgttggt ctactcaaaa aatctaaagg aaacaactgc cgaagatcaa
7101 agggcaattg agacctttca gaaaagggta atttcgggaa gccttcttgg
7151 attccattgc ccatcaatct gtcactttat caaaaggaca gtagaaaagg
7201 aaggtggcgc ctaccaatgc catcaatgcg ataaaggaaa ggctatcgtt
7251 gaagataagc ctgccgacag tggtccagca gacagtctcg ggtccaccac
7301 cacgaaagaa aacgtggaaa aagaagatgc cgtttccact acgacatctt
7351 caaagcaagt ggattgatgt tatatctcca ctgacgtaag ggatgacgca
7401 caatcccact atccttcgca agacccttcc tctatataag gaagttcatt
7451 tcatttggag aggacacgct gaaatcacca gtctctctct acaactctct
7501 ctctctacat ttctccataa taatgtgtga gtagttccca gataagggaa
7551 ttagggatct tatagggttt cgctcatgtg ttgagcatat aagaaaccct
7601 tagtatgtat ttgtatttgt aaaatacttc tatcaataaa atttctaatt
7651 cctaaaacca aaatccagta ctaaaatcca gatctcctaa agtccccata
7701 gatctttgtg gtgaatataa accagacacg agacgactaa acctggagcc
7751 cagacgccgt ttgaagctag aagtaccgct taggcaggag gccgttagga
7801 aaagacgcta aggcagggtt ggttacgttg actcccccgt aggtttggtt
7851 taaatatcat gaagtggacg gaaggaagga ggaagacatg gaaggataag
7901 gttgcaggcc ctgtgcaagg taagacgatg gaaatttgat agaggtacgc
7951 tactatactt atactatacg ctaagggaat gcttgtattt accctatata
8001 ccctaataac cccttatcga tttaaagaaa taatccgcat aagcccccgc
8051 ttaaaaaatt