Sequence of DPV Tomato yellow leaf curl Thailand virus
Tomato yellow leaf curl Thailand virus-[2] segment A, complete sequence.
ACC No: AF141922
Dated: 2007-04-10 | Length: 2751 | CRC: 1126685614
ID AF141922; SV 1; circular; genomic DNA; STD; VRL; 2751 BP.
XX
AC AF141922;
XX
DT 21-JUN-1999 (Rel. 60, Created)
DT 10-APR-2007 (Rel. 91, Last updated, Version 7)
XX
DE Tomato yellow leaf curl Thailand virus-[2] segment A, complete sequence.
XX
KW .
XX
OS Tomato yellow leaf curl Thailand virus-[2]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2751
RA Attathom S., Chiemsombat P., Kositratana W., Sae-Ung N.;
RT "Complete Nucleotide Sequence and Genome Analysis of Bipartite Tomato
RT Yellow Leaf Curl Virus in Thailand";
RL Witthayasan Kasetsat 28:632-639(1994).
XX
RN [2]
RP 1-2751
RA Attathom S., Chiemsombat P., Kositratana W., Sae-Ung N.;
RT ;
RL Submitted (09-APR-1999) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, Kasetsart University, Malaiman, Nakorn Pathom 73140,
RL Thailand
XX
FH Key Location/Qualifiers
FH
FT source 1. .2751
FT /organism="Tomato yellow leaf curl Thailand virus-[2]"
FT /segment="A"
FT /strain="Thailand"
FT /mol_type="genomic DNA"
FT /note="bipartite geminivirus"
FT /db_xref="taxon:221540"
FT gene 327. .611
FT /gene="AV2"
FT /note="synonym: V2"
FT CDS 327. .611
FT /codon_start=1
FT /gene="AV2"
FT /product="precoat protein"
FT /db_xref="GOA:Q9WPG4"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:Q9WPG4"
FT /protein_id="AAD39152.1"
FT /translation="MLAVKYLQAVEKTYSPDTLGFDLIRDLIGVIRAKNYVEASSRYSH
FT FHSRLESTSPSELRQPIQQPCCCPHCPRHKRAGMEEPTCIQKAQDLQNV"
FT gene complement(406. .741)
FT /gene="AC5"
FT /note="synonym: C5"
FT CDS complement(406. .741)
FT /codon_start=1
FT /gene="AC5"
FT /product="AC5 protein"
FT /db_xref="InterPro:IPR013671"
FT /db_xref="UniProtKB/TrEMBL:Q9WPG3"
FT /protein_id="AAD39157.1"
FT /translation="MSKPNTTGNVIQTYYLAHMSNVVLRIERLDLTWALTSLRDIRASI
FT HSVDPGLSVCRSVLPYLPFCDADSGDSSTAVVWAVEVQTATYFRDGSGNENICWTLRHS
FT SSHELHR"
FT gene 433. .1203
FT /gene="AV1"
FT /note="synonym: V1"
FT CDS 433. .1203
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /db_xref="GOA:Q9WPG2"
FT /db_xref="InterPro:IPR000143"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:Q9WPG2"
FT /protein_id="AAD39151.1"
FT /translation="MSKRPADILISTPVSKVRRRLNFDSPYNSRAAVPTVRVTKGQVWK
FT NRPAYRKPRIYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLYDVTRGIGLTHR
FT VGKRFCVKSLYFVGKIWMDENIKVKNHTNTVLFWIVRDRSPTGTPYDFQQVFNVYDNEP
FT STATVKNDQRDRFQVIRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENH
FT TENALLLYMACTHASNPVYATLKVRSYFYDSVTN"
FT gene complement(1200. .1604)
FT /gene="AC3"
FT /note="synonym: C3"
FT CDS complement(1200. .1604)
FT /codon_start=1
FT /gene="AC3"
FT /product="AC3 protein"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="InterPro:IPR008973"
FT /db_xref="UniProtKB/TrEMBL:Q9WPG1"
FT /protein_id="AAD39155.1"
FT /translation="MDSRTGELLTATQSESGVYIWTVKNPLYFKITRHLERPFQRNHDI
FT ITLQIQFNYNLRKALGIHKCFLACKIWTHLHPQTSRFLRVFKYQCNKYLNRLGVISINN
FT VIRAISHVLYNVLEGTIDVIEEHDIKFNIY"
FT gene complement(1345. .1755)
FT /gene="AC2"
FT /note="synonym: C2"
FT CDS complement(1345. .1755)
FT /codon_start=1
FT /gene="AC2"
FT /product="AC2 protein"
FT /db_xref="GOA:Q9WPG0"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="InterPro:IPR009072"
FT /db_xref="UniProtKB/TrEMBL:Q9WPG0"
FT /protein_id="AAD39154.1"
FT /translation="MRSSSPSKAHCTQVPIKVQHRIAKRTTRRRRVDQPCGCSYLCIAV
FT TYCHNNGFTHRGTTHCNSIREWRIYLDGQKSPIFQDNQAPRETIPEEPRHNHVTNPVQL
FT QPEESVGDTQMFSSLQNLDSFTSSDLAFLKSI"
FT gene complement(1658. .2743)
FT /gene="AC1"
FT /note="synonym: C1"
FT CDS complement(1658. .2743)
FT /codon_start=1
FT /gene="AC1"
FT /product="rep protein"
FT /db_xref="GOA:Q9WPF9"
FT /db_xref="HSSP:P27260"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:Q9WPF9"
FT /protein_id="AAD39153.1"
FT /translation="MPPSKKFLINAKNYFLTYPHCSLTKEEEALSQILNLSTPTNKLII
FT RICRELHEDGTPHLHLLIQFEGKFKCQNNRFFDLTSPTRSAHFHPNIQGAKSSTDVKAY
FT MEKDGDVLDHGIFQIDGRSARGGCQSANDAYAEAINSGSKASALNILREKAPKDFVLQF
FT HNLNSNLDRIFTPPIEEYISPFSSSSFNQVPEELEEWACNNVLSRARPLRPITIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWFNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLEEEKNSALRNWAIKNAIFVTLEGPL
FT YSGTYQGATPNSQEDNQTTES"
FT gene complement(2290. .2589)
FT /gene="AC4"
FT /note="synonym: C4"
FT CDS complement(2290. .2589)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:Q9WPF8"
FT /protein_id="AAD39156.1"
FT /translation="MKMGLLTCISSSNSKENSNAKITDSSISHPQPGQHISIRTFRELK
FT AQQMLKHTWKKTETCLIMEFSKSMEDRLEEVANLPTTHMPRQSIQGPRLRPSIY"
XX
SQ Sequence 2751 BP; 734 A; 533 C; 612 G; 872 T; 0 other;
af141922 Length: 2751 10-APR-2007 Type: N Check: 4805 ..
1 ggtcaatcgg gtcctctcaa acttggctat gcaatcgggg aatgggtcct
51 tattatagtt gtggacctaa atggcataat tgtaaataag tgtatgaaat
101 tcaaaattta aaattcaatc gtggccatcc gtataatatt accggatggc
151 cgcgattttt ttaaagtggt ccccttgatg tgatatgtca tccaatcaga
201 acactctttg aaagcctaat tatttatggt cccctattta agacttagtc
251 cccaagtttc ggcgaaattc aaaatgtgga tccactacta aacgaatttc
301 cagaaaacgt ccacggtttc cgttgtatgt tagcggtgaa gtatctgcaa
351 gcggtcgaga agacttattc ccctgatact ctagggtttg atctcatccg
401 tgatctcatc ggtgtaattc gtgcgaagaa ctatgtcgaa gcgtccagca
451 gatattctca tttccactcc cgtctcgaaa gtacgtcgcc gtctgaactt
501 cgacagccca tacaacagcc gtgctgctgt ccccactgtc cgcgtcacaa
551 aagggcaggt atggaagaac cgacctgcat acagaaagcc caggatctac
601 agaatgtata gaagccctga tgtccctaag ggatgtgagg gcccatgtaa
651 ggtccaatct ttcgatgcga agaacgacat tggacatatg ggcaaggtaa
701 tatgtctgta tgacgttacc cgtggtattg ggcttactca tcgagttggc
751 aagcgtttct gtgtgaagtc actttatttt gtcgggaaga tctggatgga
801 tgaaaatatt aaggttaaga atcatactaa caccgtttta ttctggatag
851 ttagggatcg cagtcctact ggaacgcctt atgattttca gcaggtcttt
901 aatgtatatg ataatgaacc cagcactgct actgtgaaga acgaccagcg
951 tgatcgtttc caggttataa ggaggttcca ggcaacagtt actggtggac
1001 aatatgcagc taaggagcag gcgattatta gaaagtttta tcgtgttaat
1051 aattatgtag tttataatca ccaggaagct gggaagtatg agaaccatac
1101 tgaaaatgct ttgttgttat atatggcatg tactcatgcc tctaaccctg
1151 tgtatgctac tttgaaagtc aggagttatt tctatgactc agtgacgaat
1201 taataaatat taaattttat atcatgttct tcaattacat caattgttcc
1251 ttctaataca ttgtacaata catgagatat tgccctaatt acattgttta
1301 tactaatcac gcctaatcta tttaaatatt tattacattg atatttaaat
1351 actcttaaga aacgcgaggt ctgaggatgt aaatgagtcc agattttgca
1401 ggctagaaaa catttgtgta tccccaacgc tttcctcagg ttgtagttga
1451 actggatttg taacgtgatt atgtcgtggt tcctctggaa tggtctctct
1501 aggtgcctgg ttatcttgaa atatagggga tttttgaccg tccagatata
1551 tacgccactc tctgattgag ttgcagtgag tagttccccg gtgcgtgaat
1601 ccattattgt gacaatatgt gacagctatg cacaagtacg aacatccaca
1651 aggttgatca actctccgtc gtctggttgt cctcttggct attcggtgtt
1701 gcaccttgat aggtacctga gtacagtggg ccttcgaggg tgacgaagat
1751 cgcatttttt atagcccagt ttctaagtgc ggagttcttt tcctcttcca
1801 agtactcttt atagctggag tttggtccag gattgcagag gaagatagtg
1851 ggaattccgc ctttaatttg aactggtttg ccgtatttgg tgttgctttg
1901 ccagtccctt tgggccccca tgaactcttt aaagtgtttt agataatgcg
1951 gatcgacgtc atcgatgacg ttgaaccacg catcattatt atacactttt
2001 ggacttaaat ctaaatggcc acacagataa ttatgtggtc ccaatgacct
2051 agcccacatc gtcttccctg ttctgctatc accctcaatg actatagtta
2101 ttggtctcaa tggccgcgca cgactgagaa cattattaca agcccactct
2151 tcaagttctt cgggaacttg attgaaagaa gaagaagaaa agggagaaat
2201 atattcctct attggaggag taaaaatcct atctaaatta gaatttaaat
2251 tgtgaaattg taaaacaaaa tctttagggg ccttttccct cagtatattg
2301 agggccgaag ccttggaccc tgaattgatt gcctcggcat atgcgtcgtt
2351 ggcagattgg caacctcctc tagccgatct tccatcgatt tggaaaattc
2401 catgatcaag cacgtctccg tctttttcca tgtatgcttt aacatctgtt
2451 gagcttttag ctccctgaat gttcggatgg aaatgtgctg acctggttgg
2501 ggatgtgaga tcgaagaatc ggttattttg gcatttgaat tttccttcga
2551 attggatgag gagatgcagg tgaggagtcc catcttcatg gagttccctg
2601 cagattctga tgattaattt attagttgga gttgataggt ttaatatttg
2651 ggagagtgct tcttcttctt tggtgagtga gcagtgtggg tatgtgagga
2701 aataattctt ggcatttatt agaaatttct ttgaaggagg catattgact
2751 t