Sequence of DPV Sugarcane yellow leaf virus
Sugarcane yellow leaf virus complete genome.
ACC No: AF157029
Dated: 2005-04-15 | Length: 5899 | CRC: -209045693
!!NA_SEQUENCE 1.0
ID AF157029 standard; genomic RNA; VRL; 5899 BP.
XX
AC AF157029;
XX
SV AF157029.1
XX
DT 28-JUL-1999 (Rel. 60, Created)
DT 15-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE Sugarcane yellow leaf virus complete genome.
XX
KW .
XX
OS Sugarcane yellow leaf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
XX
RN [1]
RP 1-5899
RX DOI; 10.1006/viro.1999.0162.
RX MEDLINE; 20192172.
RX PUBMED; 10725208.
RA Moonan F., Molina J., Mirkov T.E.;
RT "Sugarcane yellow leaf virus: an emerging virus that has evolved by
RT recombination between luteoviral and poleroviral ancestors";
RL Virology 269(1):156-171(2000).
XX
RN [2]
RP 1-5899
RA Moonan F., Molina J.J., Mirkov T.E.;
RT ;
RL Submitted (08-JUN-1999) to the EMBL/GenBank/DDBJ databases.
RL Dept. Plant Pathology, Texas A & M Agricultural Experiment Station, 2415
RL East Highway 83, Weslaco, TX 78596, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .5899
FT /country="USA: Florida"
FT /db_xref="taxon:94290"
FT /mol_type="genomic RNA"
FT /organism="Sugarcane yellow leaf virus"
FT /strain="A"
FT /specific_host="Saccharum sp. cultivar CP65-357"
FT 5'UTR 1. .66
FT CDS 67. .837
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q9QQP0"
FT /note="similar to ORF 0 deduced peptide of beet western
FT yellows virus"
FT /function="unknown"
FT /product="ORF 0"
FT /protein_id="AAD45682.1"
FT /translation="MLFNEFSVEGIKFRAHESTSPVFRGEVSRCLTYYRVFACKWVELT
FT YQDPLTRHLVQNYYGPNTPVYNWLEHIRLIVVTMVPILLLPDTTIGRHIHIKRQYLQSV
FT LLWLARNKLYYRVKRCRSKRFVLEQDHIGPELFRTQLLQYAGLDVFQDVARLQDFLERG
FT YDTFRSVLGVHLLEHERFVSRILEQPVMEPDQAVRLCFHYHNALDHDDDDSGLETDFDN
FT LSLGRPYINGLPPNEKIIFIHSNLVGRSTYSHDI"
FT CDS 242. .2194
FT /codon_start=1
FT /db_xref="GOA:Q9QQN9"
FT /db_xref="InterPro:IPR000382"
FT /db_xref="UniProt/TrEMBL:Q9QQN9"
FT /note="predicted protease cleavage sites produce three
FT peptide products, with significant similarity to
FT Polerovirus ORF 1 peptide sequences"
FT /product="multifunctional protein"
FT /protein_id="AAD45683.1"
FT /translation="MAPTLPFTTGWSTFALLLSLWCLFCSCQTQPLDGTSILRDSTSSL
FT SFYGLPATNSTIELRDAVPSGLYSSKITSAPNFSELSYSSMLGWMFFKMWRDCKTFSRE
FT ATTLSDRFLEYTFSNTKGLLVEFLNNLLWNLIKLYVYAFTIITRLIMTMTILAWKPILI
FT ICLLVVLTSMVYHLMRKLFSFIQIWWVVAPILMIYRTVTYIHRRLFASRGDEKMVQGFK
FT SFAVPMSPPGHSVLEIVHPDDSHMGYASCVRLKNGEEALMTSVHCISDSFKVRSFRNGI
FT KIPLTEFQVLLPANAMDIVLLRGPPEWKSILGAKAAHFTPVNQLNKGAVSFFIFDKEWM
FT MHNAKVTGTDGFYATVLSNTEKGYSGAPYWNGKSIVGVHKGHVYGDDSKNYNLMSPIPP
FT VKGLTAPNFVYESPSLQGDVFSDADVSDIADYAEEVYEKTLAEPKVWKPASGKYWWEMA
FT EEEDDFVVEAKSPPPDKPVENATAKEQTPASTVEKAMVADQPTPDQGNEPSGADHLKTP
FT ESTPLKQDESTKELLNNIVSQLIQKIDLSSIATRVEEKLLRQAQNKQQQNGGKKSPRKR
FT KTSNTSSKPHTNGKSPPVTSQGSGNAANSPRYTIPQNRRAHNGESASSQSTQKWRPKSP
FT VSGGPPSAPKPKRQV"
FT mat_peptide 242. .1474
FT /note="N terminal cleavage product of ORF1"
FT /product="serine protease"
FT mat_peptide 1475. .1582
FT /note="cleavage product of ORF1"
FT /product="VPg genome-linked peptide"
FT mat_peptide 1583. .2191
FT /product="C-terminal cleavage product ORF1"
FT CDS <1735. .3453
FT /codon_start=1
FT /db_xref="GOA:Q9QQN8"
FT /db_xref="InterPro:IPR001795"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="UniProt/TrEMBL:Q9QQN8"
FT /note="ORF 2; produced by predicted -1 translational
FT frameshift of ORF 1 gene product; similar to Polerovirus
FT ORF 2 (RdRp) deduced peptide sequences."
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="AAD45684.1"
FT /translation="SADSRPGKRAKWRRPLKNTGIHPAQARRIYKRVAQQHRLAVDSKD
FT RPELHCNEGGGETAASGPEQTAAERREEVAQKTQDLEHFFQAAYKWEESTSDIPGFRKC
FT GKLPALYHPPKPKSTQWGERIISEHPEMASKVAGFGWPSFGAQAEETSLRLQAARWLKR
FT AESAEKPTEKQRKLVIDRVVKAYEPCRTNAPHTSSSGSLIWSDFLKDFKEAVNSLELDA
FT GIGLPYKLLHKDTHRQMVEDPKFLPLLTRLTWNRLQKMSQVDFQEMTPEQLVREGLCDP
FT IRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLVARVLFQAQNKREIALWRAIPSKPGFG
FT LSTDREAREFIESLSKTVGCSPAEVIHGWRDKIVPTDCSGFDWSVADWMLEDDMEVRNX
FT LTINNNELTRRLRACWLKCITNSVICTSGGVLYAQTHPGVQKSGSYNTSSSNSRIRVMA
FT AFHCGADWAIAMGDDALESPNSNINAYQKLGFKVEVASQLEFCSHVFEQEDLARPLNVN
FT KMLYRLIFGYNPACGNAEVLCNYLQAVASVLNELRHDPQLVATLHEWLVPGAATK"
FT CDS 3648. .4238
FT /codon_start=1
FT /db_xref="GOA:Q9QQN7"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProt/TrEMBL:Q9QQN7"
FT /note="ORF3; similar to Luteovirus ORF3"
FT /product="capsid protein"
FT /protein_id="AAD45685.1"
FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG
FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT
FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPK"
FT CDS 3679. .4131
FT /codon_start=1
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProt/TrEMBL:Q9WI47"
FT /note="ORF4"
FT /product="putative movement protein p17"
FT /protein_id="AAD45686.1"
FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE
FT ATGMFSLSRLTISKPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT
FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKSSRPPSSGGKIS"
FT CDS <4239. .5678
FT /codon_start=1
FT /db_xref="GOA:Q9QQN6"
FT /db_xref="InterPro:IPR000893"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProt/TrEMBL:Q9QQN6"
FT /note="ORF5; ORF 5; produced by translational readthrough
FT of TAG stop codon of ORF 3; similar to putative aphid
FT transmission factor located on RNA 1 of pea enation mosaic
FT virus, an Enamovirus; Luteovirus-Polerovirus derived RNA
FT sequence recombination site, of projected sugarcane
FT yellowleaf virus evolutionary history, is predicted to
FT occur within RNA sequence that encodes for the deduced
FT N-terminal proline-rich region"
FT /product="putative aphid transmission factor"
FT /protein_id="AAD45687.1"
FT /translation="VGDAPPTPTPTPTPPAPTPAPAPKYFGYQGVPNNIVKTRGNSEYL
FT DVGPLENVTMYLWKDESWSIEQLSAGYRVNNRERAIPFVLFPVDKGKYSVFIQCEGFKA
FT VKAKGGTNDGKMSGFLCDNANLAGWRAYAYSGCTISNYRTSDSNVPGHPDMKVNGGSFT
FT DQLVERDFSCSFHLEVPQQGYFGLEAPPIEKSDHFNFVVSYANFTDKILEWGSISVAID
FT EVNDGAYSRSKWDKTTAMSARLPTQVSAPSEVYTPEAPEQPTNEGTESMPPAPNPALGP
FT DNPATKEPTPKIVDNPDPKVLNWLNNQRDKPVVEEVLRESPIYAPPPPPSLVPTHADTL
FT RQADKVRRALMANASRSASPPPTNTEVPVLGATDTASLSGSLRGGSLRGNLGSRPSLPR
FT VADSPPRSVSPARSETSTLQGGSLSGGSLRGGNLQALPEATREQRREYERLKNSQGKTV
FT AKAHAKEHGYKPPKSSSSLFG"
FT 3'UTR 5679. .5899
XX
SQ Sequence 5899 BP; 1576 A; 1537 C; 1418 G; 1358 T; 10 other;
AF157029 Length: 5899 April 19, 2005 08:52 Type: N Check: 33 ..
1 acaaaatata tcgggaggga aacccctgat atatttggac caagcctctg
51 acttgtaaac tgctctatgc ttttcaacga attctctgtt gagggaatta
101 aattcagagc acacgaaagc acttcacccg tctttcgtgg ggaggtttcc
151 aggtgtttga cctactacag agtcttcgcc tgcaagtggg ttgagttgac
201 ctatcaagat ccactcacac gccatttagt acaaaattac tatggcccca
251 acactcccgt ttacaactgg ctggagcaca ttcgccttat tgttgtcact
301 atggtgccta ttctgctcct gccagacaca accattggac ggcacatcca
351 tattaagaga cagtacctcc agtctgtcct tttatggctt gcccgcaaca
401 aactctacta tagagttaag agatgccgtt ccaagcggtt tgtactcgag
451 caagatcaca tcggccccga acttttccga actcagctac tccagtatgc
501 tgggttggat gtttttcaag atgtggcgcg attgcaagac tttctcgaga
551 gaggctacga cactttccga tcggttcttg gagtacacct tctcgaacac
601 gaaaggtttg ttagtcgaat tcttgaacaa cctgttatgg aacctgatca
651 agctgtacgt ttatgctttc actatcataa cgcgcttgat catgacgatg
701 acgattctgg cctggaaacc gattttgata atctgtctct tggtcgtcct
751 tacatcaatg gtctaccacc taatgagaaa attattttca ttcattcaaa
801 tttggtgggt cgtagcacct attctcatga tatataggac cgtcacgtac
851 attcacagaa ggttgttcgc ttcacgtggg gacgagaaaa tggtccaagg
901 tttcaaaagc tttgccgtcc ccatgtcacc accaggacac tcagtgcttg
951 agatagtaca ccccgatgat tctcacatgg gatatgcatc ctgtgttcga
1001 ttgaaaaacg gggaagaggc tctcatgaca tccgttcact gcataagcga
1051 ttctttcaag gttcgctcgt tcaggaatgg tatcaagatc cctctaacgg
1101 aattccaagt gctgttgccc gccaatgcga tggacattgt tcttcttcga
1151 ggcccacctg agtggaagtc catccttgga gccaaagcag cccacttcac
1201 tccagtcaac cagctcaaca aaggggctgt gtctttcttc attttcgaca
1251 aggagtggat gatgcacaac gcaaaagtta caggaactga tggtttttat
1301 gccacagttc ttagtaacac tgagaagggc tacagtggcg ccccctactg
1351 gaatgggaaa tctatagtag gggtgcataa agggcacgtg tacggagacg
1401 attccaagaa ttacaatctt atgtcgccga ttccccctgt caaggggtta
1451 acggcgccta attttgtgta tgagtctccg tctctgcaag gagatgtctt
1501 tagcgacgcc gacgtttcag acattgctga ttacgccgag gaggtgtatg
1551 agaaaaccct tgcagagcct aaagtgtgga aacctgccag cggcaaatac
1601 tggtgggaaa tggctgaaga agaggatgat tttgtcgttg aggcaaagtc
1651 acctccccct gataaacctg ttgagaacgc tacagcaaaa gagcagactc
1701 cagcttcgac tgtcgagaaa gctatggttg ctgatcagcc gactccagac
1751 cagggaaacg agccaagtgg cgccgaccac ttaaaaacac cggaatccac
1801 cccgctcaag caagacgaat ctacaaaaga gttgctcaac aacatcgtct
1851 cgcagttgat tcaaaagatc gacctgagct ccattgcaac gagggtggag
1901 gagaaactgc tgcgtcaggc ccagaacaaa cagcagcaga acggagggaa
1951 gaagtcgccc agaaaacgca agacctcgaa cacttcttcc aagccgcata
2001 caaatgggaa gagtccacca gtgacatccc agggttcagg aaatgcggca
2051 aactccccgc gctataccat cccccaaaac cgaagagcac acaatgggga
2101 gagcgcatca tctcagagca cccagaaatg gcgtccaaag tcgccggttt
2151 cgggtggccc tccttcggcg cccaagccga agagacaagt ctgagactcc
2201 aagcggcacg ctggcttaaa cgagctgagt cagcggaraa gccgacagaa
2251 aaacaacgca agctcgtcat tgatcgtgtg gtyaaggcat atgaaccgtg
2301 tagaacyaat gccccacaca ccagctcctc tggcagcctc atctggtccg
2351 acttcttgaa agatttcaag gaggctgtca actcactaga actcgacgca
2401 ggaataggtc tcccatacaa acttcttcac aaagacaccc atcgtcagat
2451 ggttgaagac cccaaattcc tgccgctcct gacgcgattg acctggaacc
2501 gtttacagaa gatgtcccag gttgatttcc aggagatgac tcctgaacaa
2551 ctagtgaggg aaggattgtg cgatccgatt cgtttgttcg tcaaaggaga
2601 accgcacaag caggcgaagc ttgatgaagg gcgctaccgc ctcatcatgt
2651 cagtctcgct ggtagatcaa ctggtagccc gggttttgtt tcaagcacaa
2701 aacaaaagag agatagcttt gtggagagct atcccttcaa agcccggttt
2751 yggcttatcc acagacaggg aagcacgcga attcatygaa tccctgtcca
2801 agacagtagg gtgttcccca gcagaagtca ttcatggctg gagggacaag
2851 atcgtaccca ccgactgttc cggttttgac tggtcagtcg ccgactggat
2901 gctcgaagac gacatggaag tgagaaatyt tctcacwatc aayaacaacg
2951 agctaacccg ccgcctcagg gcgtgctggt tgaagtgcat cacaaactct
3001 gtgatttgca crtccggcgg tgtcttgtac gcccaaactc atcctggagt
3051 gcaaaaatct ggatcttaca acacgagttc atccaattcc aggattcgag
3101 taatggccgc ttttcattgc ggcgcagatt gggcgatagc catgggagac
3151 gatgcacttg agtctccaaa ctccaacatc aacgcgtatc aaaagttggg
3201 gtttaaagtc gaggttgcct cacagctaga attttgctca cacgtctttg
3251 agcaggagga cctcgccagg ccgttgaacg taaacaaaat gctttatcgt
3301 ttgatctttg gatacaatcc ggcctgtggc aacgcggagg tattgtgcaa
3351 ttacctccaa gctgtggctt ctgttctcaa cgagcttcgc catgatccac
3401 agctagttgc taccctccat gagtggctgg tccctggcgc cgccacaaaa
3451 taaatacgga ggggcatccc gagccaccat ataggttgca agagtggaac
3501 gggaagtcct atagataagc cgcgcgattc tggattacaa acttctagcg
3551 ggagttctca tcggtgttct catcgcaatt cccctagtga tcatagcggc
3601 ttacctgata ttcctcaaaa tcagtgcaca catccgagcg atagtgaatg
3651 aatacgggcg ctaaccgctc acgaaggaat gtcagaagac gcgctaaccg
3701 tcgtagacag actcggccag tggtcgtggt ccgggctccc ccaggaccta
3751 gacgagtacg acgacgtaga gcacgtgttg gaggaaacgc tgtgcgagga
3801 ccgggaggaa gaagcaaccg ggatgttctc actttcacgg ttgacgatct
3851 caaagccaac tcaaccggga tcctcaaatt cggaccgaac ttatctcagt
3901 acgcagcgtt caacaatggc ttactcaaag cctaccatga gtataaaatc
3951 acaagtctca ctattcagta taactcatgc tcctccgacg caactccagg
4001 tgcaatcgca cttgaagtgg atacatcctg ctcccaaaca acaacaggct
4051 ccaagattac tagcttcccc gtcaagagga acgccaagaa agtcttcccg
4101 gcccccttca tcagggggaa agatttcatg actacgtcag ctgaccagtt
4151 ttggttgctg tacaaaggga atggagactc gagcctagca ggacaattcg
4201 tctgccgatt tgaatgcctt ttccagaatc ccaaataggt aggcgacgct
4251 cccccaacac ccaccccaac accaacccca cccgctccga ccccggcacc
4301 ggctcccaag tattttggat accaaggagt gccgaacaac atcgtgaaaa
4351 caagaggaaa ctctgaatat ctagatgtgg gtccgctcga aaatgtgacc
4401 atgtatcttt ggaaagacga atcgtggagc attgagcaac tgtcagccgg
4451 atatcgcgtt aacaatcgag aacgtgccat accctttgtc ctctttccag
4501 tggataaagg taaatactcc gtgtttatac aatgtgaggg ctttaaggca
4551 gttaaagcca aaggaggcac gaacgacggc aagatgagcg ggtttctttg
4601 tgacaatgca aatctcgcgg gttggcgagc atacgcatat agtgggtgta
4651 caatctctaa ttatagaaca tcggactcta atgttcctgg tcatccggac
4701 atgaaagtca atggtggatc ttttaccgac caattggtcg agagagattt
4751 ttcttgttca tttcaccttg aggtgcctca acaaggctat tttggcttag
4801 aggccccacc cattgaaaag agtgatcatt tcaattttgt ggtgtcttac
4851 gctaacttca ctgataaaat cctggaatgg ggttcaatct ctgtagcgat
4901 agacgaggtg aatgacggag cgtatagtag atcaaaatgg gataagacta
4951 ctgcaatgag tgctcgtttg ccgactcagg tgagcgcccc ctctgaggtt
5001 tacaccccgg aagcacctga acaaccgact aacgaaggga cggagagtat
5051 gcctccagcc ccgaacccgg cactgggacc ggacaaccca gcaaccaaag
5101 aacccacgcc caaaatcgtg gataatccgg acccaaaggt actcaactgg
5151 cttaacaacc agcgagataa acctgtggtg gaagaggttt tgcgtgaatc
5201 tccgatttat gctcctccac cccccccgtc tctagtcccg actcatgccg
5251 acactttaag acaggcggat aaggtccgga gagctctcat ggctaacgct
5301 tcacgttcag cctcacctcc ccccacgaac accgaagttc ctgttcttgg
5351 agccactgac accgcttctc ttagtggatc attacgcggt ggctccctca
5401 ggggtaattt gggttctcgc ccctctcttc cgagggtcgc tgacagccct
5451 ccccgttctg taagtccggc tcgttccgag accagcactt tacagggcgg
5501 ttccctgagc ggtggttctt tgagaggtgg taacctccag gctttgcctg
5551 aggccacaag agagcaaagg agggaatatg aacgtctcaa gaattcacaa
5601 gggaagacgg tagcaaaagc ccatgctaaa gaacacggtt acaagccacc
5651 gaaatcttcc tcctccttgt ttggttgagt gtcgagccac tataacgctc
5701 cccgccccgg gacacgggac tccaatcatg agtttaaact gagctctttc
5751 cacgagccta aactggagaa ctccgcaaag ttctaaaact atgcagatgg
5801 gctagcgacc cagctcttcc attgattttc aggatctttg gaagcccaag
5851 ctaaaggggt ggaatacagg gaggcactgc ctcccgtata tcctagtwa