Sequence of DPV Tomato yellow leaf curl Indonesia virus
Tomato yellow leaf curl Indonesia virus-[Lembang] segment A, complete sequence.
ACC No: AF189018
Dated: 2006-07-25 | Length: 2762 | CRC: 620586702
ID AF189018; SV 4; circular; genomic DNA; STD; VRL; 2762 BP.
XX
AC AF189018;
XX
DT 04-OCT-1999 (Rel. 61, Created)
DT 25-JUL-2006 (Rel. 88, Last updated, Version 4)
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DE Tomato yellow leaf curl Indonesia virus-[Lembang] segment A, complete
DE sequence.
XX
KW .
XX
OS Tomato yellow leaf curl Indonesia virus-[Lembang]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2762
RA Tsai W.S., Shih S.L., Green S.K., Akkermans D., Jan F.-J.;
RT "Molecular characterization of a distinct tomato-infecting begomovirus
RT associated with yellow leaf curl diseased tomato in Lembang, Java island of
RT Indonesia";
RL Plant Dis. 90:831-831(2006).
XX
RN [2]
RP 1-2762
RA Shih S.L., Green S.K., Akkermans D.;
RT ;
RL Submitted (22-SEP-1999) to the EMBL/GenBank/DDBJ databases.
RL Virology Unit, Asian Vegetable Research and Development Center, P.O. Box
RL 42, Shanhua, Tainan, Taiwan, Republic of China
XX
RN [3]
RC Sequence update by submitter
RP 1-2762
RA Shih S.L., Green S.K., Akkermans D.;
RT ;
RL Submitted (02-JUN-2005) to the EMBL/GenBank/DDBJ databases.
RL Virology Unit, Asian Vegetable Research and Development Center, P.O. Box
RL 42, Shanhua, Tainan, Taiwan, Republic of China
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CC On Jul 24, 2006 this sequence version replaced gi:66865872.
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FH Key Location/Qualifiers
FH
FT source 1. .2762
FT /organism="Tomato yellow leaf curl Indonesia
FT virus-[Lembang]"
FT /segment="A"
FT /specific_host="tomato"
FT /mol_type="genomic DNA"
FT /country="Indonesia:Lembang"
FT /collection_date="Jan-1998"
FT /db_xref="taxon:395349"
FT gene 167. .517
FT /gene="V2"
FT CDS 167. .517
FT /codon_start=1
FT /gene="V2"
FT /product="precoat protein"
FT /db_xref="GOA:Q9QD51"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:Q9QD51"
FT /protein_id="AAF01054.1"
FT /translation="MWDPLLNEFPDSVHGFRCMLAIKYLQGVEATYAPDTVGYDLVRDL
FT ISVVRASNYAEACRRYSLFRSRIESTPSSQLRQPRYQPCCCTHCPRHKSKEVLDFSAYV
FT PEAQDLPDVPNS"
FT gene 327. .1100
FT /gene="V1"
FT CDS 327. .1100
FT /codon_start=1
FT /gene="V1"
FT /product="coat protein"
FT /db_xref="GOA:Q9QD50"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:Q9QD50"
FT /protein_id="AAF01055.4"
FT /translation="MLKRAGDIAFSGPVSKVRRRLNYDSPGTSRAAVLTALGINRKKSW
FT TSRPMYRKPRIYRMYRTADVPRGCEGPCKIQSFESRHDIAHTGKVMCVTDVTRGGGLTH
FT RTGKRFCVKSLYILGKIWMDENIKTKNHTNTVMFYVVRDRRPYGTPQDFGQVFNMFDNE
FT PSTATVKNDLRDRFQVLRKFTATVVGGQYACKEQTLVRKFMRLNNYVVYNHQETAKYEN
FT HTENALLLYMASTHASNPVYATLKIRIYFYDSITN"
FT gene complement(1097. .1501)
FT /gene="C3"
FT CDS complement(1097. .1501)
FT /codon_start=1
FT /gene="C3"
FT /product="C3 protein"
FT /protein_id="ABG79570.1"
FT /translation="MDLRTGEYITAAQARNGVYIWEIQNPLYFKILSHHSRPFNTNHDV
FT ITIRLQFNHNLRKALGIHRCFLTFQVWTYLHPPTGLFLKVFKTQCIKYLNNLGVISINN
FT VIRAVDHVLFKVLERTIDVQPDYEIKFNIY"
FT gene complement(1242. .1649)
FT /gene="C2"
FT CDS complement(1242. .1649)
FT /codon_start=1
FT /gene="C2"
FT /product="C2 protein"
FT /protein_id="ABG79571.1"
FT /translation="MQNSSPSRDHCTQVPIKVQHRIAKKKIIRRRRVDLNCGCSYYVSI
FT NCANHGFTHRGVHHCSSSQEWRLYLGDSKSPLFQDTQPSQPAVQHEPRRDNNTAAVQPQ
FT PEESVGNTPVFSDVPSLDLLTPSDWAFLKSL"
FT gene complement(1579. .2667)
FT /gene="C1"
FT CDS complement(1579. .2667)
FT /codon_start=1
FT /gene="C1"
FT /product="replication-associated protein"
FT /protein_id="ABG79572.1"
FT /translation="MESNRGTPSNNSLTKRFQINAKNYFLTYPHCSLSKSEALSQIRNL
FT NTPTNKKYIKICSELHEDGEPHLHVLIQFEGKFKTKNKRFFDLVSPTRSTHFHPNIQGA
FT KSSSDVKAYIEKDGDTLEWGTFQIDGRSSRGGKQSANDAYAKAMNAGNKAEALNILKEL
FT APKDYILQFHNLNTNLDKIFMTPQPVFTSPFLSSSFDQVPEELEEWVAENIVDPAARPL
FT RPKSLVLQGDSRTGKTMWARSLGRHNYLCGHLDLNPRVYSNDAWYNVIDDVDPHYLKHF
FT KEFMGAQMDWQSNTKYGRPIQIKGGIPTIFLCNAGPTSSYKEFLDEPKNIALKNWSLHN
FT AEFITLERPLYSGSHQSPAPDC"
FT gene complement(2283. .2480)
FT /gene="C4"
FT CDS complement(2283. .2480)
FT /codon_start=1
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="ABG79573.1"
FT /translation="MGNHISMCLSNLRVSSRQRTRGSSIWYPQPDQHISIRTFRELNQA
FT PMSKHISKRMVIPLNGVPSK"
XX
SQ Sequence 2762 BP; 709 A; 561 C; 639 G; 853 T; 0 other;
af189018 Length: 2762 25-JUL-2006 Type: N Check: 2959 ..
1 acctacaggc cgccggggcc cggggtcact atggtccccc cccactttag
51 ctgcttttgc ttttgcttta atgtggtccc gtaataaatg agagagcgcg
101 atgagcgctt agttgatttg tggtccttct ataaaacgtg ctgggcacgg
151 agaaagctga atagccatgt gggatcctct tttaaacgaa tttccggatt
201 ctgttcacgg ttttcggtgt atgctcgcaa taaagtattt gcaaggcgtt
251 gaagcaacct acgcccctga tactgtcggt tacgacctag ttcgagatct
301 gatctcagtt gttcgtgcga gcaattatgc tgaagcgtgc cggagatata
351 gccttttccg gtcccgtatc gaaagtacgc cgtcgtctca attacgacag
401 cccaggtacc agccgtgctg ctgtactcac tgccctcggc ataaatcgaa
451 agaagtcttg gacttctcgg cctatgtacc ggaagcccag gatttaccgg
501 atgtaccgaa cagctgatgt ccctagggga tgtgaaggtc cttgcaagat
551 tcaatccttt gaatctcgac atgatattgc tcacaccggt aaggttatgt
601 gtgtgacgga tgttactcgt ggcggtggtt taacccaccg tactgggaag
651 agattttgcg ttaagtccct ctatatcctt ggcaaaatct ggatggatga
701 aaatatcaag actaagaatc acactaacac ggtcatgttc tatgttgttc
751 gggatcgtag accctatggt actcctcaag attttggaca agtgtttaac
801 atgttcgata acgaacctag cactgcaact gtcaagaatg atcttcgaga
851 tcggtttcaa gttttgcgga agttcacggc aactgttgtt ggtggtcagt
901 atgcttgtaa ggaacaaacg ttagttagga agttcatgag attgaacaat
951 tatgttgttt acaaccatca ggaaaccgca aaatatgaga atcatacaga
1001 gaatgctctg ttattgtaca tggcatctac gcatgcctct aaccctgtgt
1051 atgcaacttt gaaaattcgg atctattttt atgattcgat aacaaattaa
1101 taaatgttga attttatttc ataatctggt tgtacatcaa tagtgcgttc
1151 tagcacttta aacaagacat ggtctacagc tctaattaca ttattaattg
1201 aaattacacc taaattattc aagtatttaa tacattgagt cttaaagact
1251 tttaagaaaa gcccagtcgg agggtgtaag taagtccaaa cttggaacgt
1301 cagaaaacac cggtgtattc ccaacgcttt cctcaggttg tggttgaact
1351 gcagccgtat tgttatcacg tcgtggttcg tgttgaacgg ccggctgtga
1401 tggctgagta tcttgaaata gaggggattt tgaatctccc aaatatagac
1451 gccattcctg gcttgagctg cagtgatgta ctcccctgtg cgtaaatcca
1501 tgattagcac agtttattga cacgtagtat gagcaaccgc aattaaggtc
1551 tacccgccgt cgtcttatta tcttcttttt agcaatccgg tgctggactt
1601 tgatgggaac ctgagtacag tggtctctcg agggtgatga attctgcatt
1651 atgaagagac caatttttaa gtgcgatgtt tttaggttcg tctaaaaact
1701 ctttatatga agatgtgggt ccagcattac ataaaaagat ggtcggtatc
1751 ccgcctttaa tttgaatggg tctaccatac tttgtattgc tttgccagtc
1801 catctgggcc cccataaact ctttaaagtg ctttaggtaa tgcggatcga
1851 cgtcatcaat gacgttatac catgcgtcat ttgagtaaac cctaggattg
1901 agatctagat ggccgcacaa gtaattgtgc ctaccaagcg atctagccca
1951 catggtttta cctgtacgac tatcaccttg taacaccaga ctctttggtc
2001 ttaatggccg cgcagcgggg tcgactatgt tctcggcgac ccattcttca
2051 agttcttcag gaacctggtc aaaggatgaa gataagaatg gagaggtaaa
2101 gactggttgc ggagtcatga agatcttgtc aagatttgtg ttcaagttat
2151 gaaactgcaa gatgtaatct ttaggcgcaa gttctttaag aatattcaga
2201 gcctccgctt tgtttcctgc attcatagct tttgcataag cgtcgttagc
2251 ggattgcttt ccgcctcttg aagatcttcc atctatttgg aaggtacccc
2301 attcaagggt atcaccatcc ttttcgatat atgctttgac atcggagctt
2351 gatttagctc cctgaatgtt cggatggaaa tgtgttgatc tggttgggga
2401 taccagatcg aagaacctct tgttctttgt cttgaactta ccctcaaatt
2451 ggataagcac atggagatgt ggttccccat cctcgtgaag ctctgagcag
2501 attttgatat attttttatt tgttggggta ttcaaatttc taatttgaga
2551 gagagcttcg cttttagaga gagagcagtg aggataggtg aggaaatagt
2601 ttttagcgtt tatttgaaaa cgctttgtga gagagttatt agagggggtt
2651 ccccgattgc tctccattcc atctatcgta tgtatattgg ggaacgggga
2701 cctataaata cttctgtccc caataggttt tgtgcttacg tggcggcctg
2751 tagtataata tt