Sequence of DPV Chayote mosaic virus
Chayote mosaic tymovirus, complete genome.
ACC No: AF195000
Dated: 2005-04-15 | Length: 6364 | CRC: 1267666257
!!NA_SEQUENCE 1.0
ID AF195000 standard; genomic RNA; VRL; 6364 BP.
XX
AC AF195000;
XX
SV AF195000.2
XX
DT 22-NOV-1999 (Rel. 61, Created)
DT 15-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE Chayote mosaic tymovirus, complete genome.
XX
KW .
XX
OS Chayote mosaic tymovirus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymoviridae;
OC Tymovirus.
XX
RN [1]
RP 1-6364
RA Bernal J.J., Jimenez I., Moreno M., Moreira L., Rivera C.,
RA Rodriguez-Cerezo E.;
RT "Serological and molecular characterization of chayote mosaic virus, a new
RT tymovirus infecting Cucurbitaceae";
RL Unpublished.
XX
RN [2]
RP 1-6364
RA Bernal J.J., Jimenez I., Moreno M., Moreira L., Rivera C.,
RA Rodriguez-Cerezo E.;
RT ;
RL Submitted (14-OCT-1999) to the EMBL/GenBank/DDBJ databases.
RL Plant Molecular Genetics, Centro Nacional de Biotecnologia CNB-CSIC, Campus
RL de Cantoblanco, Madrid 28049, Spain
XX
RN [3]
RC Sequence update by submitter
RP 1-6364
RA Bernal J.J., Jimenez I., Moreno M., Moreira L., Rivera C.,
RA Rodriguez-Cerezo E.;
RT ;
RL Submitted (26-MAY-2000) to the EMBL/GenBank/DDBJ databases.
RL Plant Molecular Genetics, Centro Nacional de Biotecnologia CNB-CSIC, Campus
RL de Cantoblanco, Madrid 28049, Spain
XX
CC On May 26, 2000 this sequence version replaced gi:6456716.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6364
FT /db_xref="taxon:107950"
FT /mol_type="genomic RNA"
FT /organism="Chayote mosaic tymovirus"
FT /strain="Chayote (Sechium edule)"
FT CDS 140. .2182
FT /codon_start=1
FT /db_xref="GOA:Q9QCX4"
FT /db_xref="InterPro:IPR004935"
FT /db_xref="UniProt/TrEMBL:Q9QCX4"
FT /note="movement protein; OP"
FT /product="overlapping protein"
FT /protein_id="AAF09239.1"
FT /translation="MSNVVPTSLGRSLPYYSPGLLCLPGSGLCVPTTPLLHSGLPMDSP
FT KGTPAVPHPIRDPNLRIRFNPPPSPSSQGPRDQPSVQPLEPPLPGSLDRAFHEALKIQE
FT ASGSQPPLLPTPQLPAVLRRHSPVPHHQLYPPHLNQRVHARRADVLPPQSNTGPLSPMP
FT PTRDALLQSRDSPRVRLHGLLPLPSSVPIPSDRLVSPLHPRKPSRRQLQPAFSRPKLVE
FT SALHHLSPPHSQHHQAGVLGPPPLHSSPERPSSPTPSFHSCSSSVSSTDSLPLNPLFLR
FT LRFDRQSPILPDPGLLGAAPSHLPPPTSPSSSRSHQGVRGSVHLHSGRPNPSRLGSRRL
FT RSHAQQQTRALLGNVPSLGQSTNVRPAKRPHPTPRHVQLLPQPGSQAAPSRSTTLAVDP
FT TKGIPCVVRFGSLPPLPISPDYPPSPLGKYPRPPPYVLPKPRLSPKPPSRSKPLRRGFL
FT PPSTSSPLLPSPVPAPNGKGLLPLPLPRRPCKPSSTPRPHHPHRKSHSHLPNQPASKVP
FT SFPHPSIPTMSQPPSLPSSSSGPPRHLPLRSPSPPVSAPMEAPQLPCVESPPLSPPLSH
FT PPSSPELIVYRPRRSASLSPHSHHPGARVRFSSFRSRSFSPRRSSPAQSHRPLSDPHPS
FT SNFRSQLSSYFGDSPTPSCYLNRFSLLDSGLHSSSVCTDWLPKPQ"
FT CDS 147. .5654
FT /codon_start=1
FT /db_xref="GOA:Q9QCX3"
FT /db_xref="InterPro:IPR000606"
FT /db_xref="InterPro:IPR001788"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="InterPro:IPR008043"
FT /db_xref="UniProt/TrEMBL:Q9QCX3"
FT /note="RP"
FT /product="replication protein"
FT /protein_id="AAF09240.1"
FT /translation="MSFQLALDALSHTTHRDSSVFPVLDSVSQPLRSSIQDYPWIVPKE
FT HLPFLIQSGIQISGFGSTPHPHPVHKVLETNLLFNHWNHLCRVPSTVLFMKPSKFRRLQ
FT EANPHFSQLLNYRLSSADTARYPTTSSILPTLTNAFMHDALMYFHPSQILDLFLQCPQL
FT ETLYCSLVIPPESDFTDFSLYPHLYQFQVTGSSLHYTPESHHAGSYNQPSLALSWLKVH
FT SITSPHLTLSITKLESWGPLHSILVQRGLPLQHPLSIHAPPPSPPQTLSLSTPSFSDFA
FT STDSLQSFQTPDCLELPQATFLHQPLRHRLVPTKVYEALFTYTRAVRTLRVSDPAGFVR
FT MHSNKPEHSWVTSQAWDNLQTFALLNAPIRPPAMYSFFLNPVRKLLLVARQHWQSILLK
FT VSPALSASVLFLLSQSHLITLPLPSVNIRGLLPTFSRSPAYPPNPLLDQSPSEEAFSRH
FT LHLLLSSLPQSLPQMAKDFFLSLSPVDPASPPRPPALTIRTVKAIPIFQTSLPVRFLLS
FT LTPQFLLCLNRLLSPLPLQALHDTYHSVLHPPQFRLQWKLRSFHVSKAHPFLPLSLTPP
FT PLLSSSSTAPDVPPLFPPIHIIPEPESASPPSEAALSLPADLPQPNLTAPSLTPTPAPT
FT SEASSQATSATPLPPAVTSIDSPSLTQASIPPQSAQTGCPSPSEILFPESSGSPTVLPT
FT GALTFSNSPSSPQTSLQSKKSPPPTPLESDPSCTGPVVPFSEAFPAYYYSDTASFHTRV
FT RCLPPSQIAVPALCCLLEAFSSETKLPVDDLWLTLRSHLPDSLLSNSEISTYGLSTDLL
FT TALCFFYHLRCSLHTNSGVLLFGIQNSEQHICITHTSGPPAHYSPGARLNGSAPRSNPL
FT NSPLVRAALRFKYQNHFLPFERAHAFTTSLPHAKNLISNMKNGFDGILSSLDSPSSSGP
FT SPREKLFAIDALIDSTQARTVPIIHIAGFAGCGKTHPIQQLLRTPLFRDFRVSCPTTDL
FT RSEWKDDMKPSPPNVWRFSTWESSLLKTSSVLVIDEVYKLPSGYLDLSILSDPAIQLVI
FT LLGDPLQGEYHSTSLSSSNSRLESEITRLSPFIDCYCWWSYRIPQSVAEVLDVTSFNPT
FT RGFIRASLTHPQNSKNLVNSIATANALQHMGHHAMTISSSQGVTFSEANTILLDRNTNQ
FT LSPNTCLVGLTRSRTGVIFVGNLHLASNSFGTCYIFSRALSGQPIDYASLFPRVFPTLR
FT RIFSPITSRKTRLLGGFSLVSHDTNLPLFARLLAFRSLSLPPHIPVSHSSDVLITSAQV
FT FSTLEESRLSTLHLPPTRLPLHYDLPPAAPSPPPAPAVDFSGLTPISHAFAGEFFDSLA
FT AFFLPPHDPQTREHPDPSIQSNQFPWVDLPFELSCQPSSLIAAKHSPSSDPLLLSASLS
FT KRLRFRPSENPYSITPMDQLLGEHLFASLQRAYKRPVEQILPFHPELFAECICANEYAQ
FT LSSKTQATIVANHTRSDPDWRFTAVKIFAKSQHKVNDGSIFGSWKACQTLALMHDYVIL
FT VLGPVKKYQRLFDDRDRPPNLYIHRGQTPLDLSHFCSSHSLPSKFVANDYTSFDQSQRG
FT EAVVLELLKMQRLSIPSHLQALHLFLKTNVRTQFGPLTCMRLTGEPGTYDDNTDYNLAT
FT IFSQYAITDQPVFVSGDDSVIASEPPQSPSWRDVLPMLNLRFKTEHTRYPLFCGYYLTP
FT QGAIRNPLALFAKLMICVDDGSVKDKILSYISEFSVGHSAGDTILHHLPSHLLPYHSAC
FT FDFFCRFATPSQKLTLSLDPIPESIWMSLIHKIRWASRSLFSQLPQKARDYLISRSHLS
FT SSSLLHSDSQPESELLPFLN"
FT CDS 5662. .6237
FT /codon_start=1
FT /db_xref="GOA:Q9QCX2"
FT /db_xref="HSSP:1E57"
FT /db_xref="InterPro:IPR000574"
FT /db_xref="UniProt/TrEMBL:Q9QCX2"
FT /note="coat protein; VP"
FT /product="virion protein"
FT /protein_id="AAF09241.1"
FT /translation="MSANVPVKVPQPSVPAPAKSLPTPSSELSSAIVLPFQILATTFGS
FT VETAFQISLSSHPSLQKLMAPYRHVQLVECEAVFCPNSFAVSAPITINAVWTTANSPAS
FT PVDILQIYGGRPFTFGGSLQSTSESILPLPGNFTNAMLKDSVAYLDTPKLLAYSPVPSS
FT PSKLPSVHLLIRGKLRLSSPLLLASPSS"
XX
SQ Sequence 6364 BP; 1170 A; 2597 C; 1020 G; 1577 T; 0 other;
AF195000 Length: 6364 April 19, 2005 08:52 Type: N Check: 6263 ..
1 gtaatctgaa ccactgctgg ccgtcttttg accctcagct tttattttac
51 tgcttttcaa tttccttccc acgtgaaagc ccttctcacg aagccctttc
101 accttcttct gcccaattgc ctgcccccgc acccaattga tgtctaatgt
151 cgttccaact agccttggac gctctctccc atactactca ccgggactcc
201 tctgtcttcc cggttctgga ctctgtgtcc caaccactcc gctcctccat
251 tcaggactac ccatggatag tcccaaagga acacctgccg ttcctcatcc
301 aatccgggat ccaaatctcc ggattcggtt caacccccca ccctcaccca
351 gttcacaagg tcctcgagac caaccttctg ttcaaccatt ggaaccacct
401 ctgccgggtt ccctcgaccg tgcttttcat gaagccctca aaattcagga
451 ggcttcagga agccaacccc cacttctccc aactcctcaa ctaccggctg
501 tcctccgccg acacagcccg gtaccccacc accagctcta tcctccccac
551 cttaaccaac gcgttcatgc acgacgcgct gatgtacttc caccccagtc
601 aaatactgga cctctttctc caatgccccc aactcgagac gctctattgc
651 agtctcgtga ttcccccaga gtccgacttc acggacttct ccctctaccc
701 tcatctgtac caattccaag tgaccggctc gtctctccat tacacccccg
751 aaagccatca cgccggcagc tacaaccagc cttctctcgc cctaagctgg
801 ttgaaagtgc actccatcac ctctccccac ctcactctca gcatcaccaa
851 gctggagtct tggggccccc tccactccat tctagtccag agaggccttc
901 ctctccaaca ccctctttcc attcatgctc ctcctccgtc tcctccacag
951 actctctccc tctcaacccc ctctttctcc gacttcgctt cgaccgacag
1001 tctccaatcc ttccagaccc cggattgctt ggagctgccc caagccacct
1051 tcctccacca acctctccgt catcgtctcg ttcccaccaa ggtgtacgag
1101 gctctgttca cttacactcg ggccgtccga acccttcgcg tctcggatcc
1151 cgcaggcttc gttcgcatgc acagcaacaa acccgagcac tcttgggtaa
1201 cgtcccaagc ttgggacaat ctacaaacgt tcgccctgct aaacgccccc
1251 atccgacccc ccgccatgta cagcttcttc ctcaacccgg ttcgcaagct
1301 gctcctagtc gctcgacaac actggcagtc gatcctacta aaggtatccc
1351 ctgcgttgtc cgcttcggtt ctcttcctcc tctcccaatc tcacctgatt
1401 accctccctc tcccctcggt aaatatccga ggcctcctcc ctacgttctc
1451 ccgaagcccc gcttatcccc caaaccccct tctagatcaa agcccctcag
1501 aagaggcttt ctcccgccat ctacatcttc tcctctcctc ccttccccag
1551 tccctgcccc aaatggcaaa ggacttcttc ctctccctct cccccgtcga
1601 ccctgcaagc cctcctcgac cccccgccct caccatccgc accgtaaaag
1651 ccattcccat cttccaaacc agcctgccag taaggttcct tctttccctc
1701 acccctcaat tcctactatg tctcaaccgc cttctctccc ctcttcctct
1751 tcaggccctc cacgacactt accactccgt tctccatccc ccccagtttc
1801 ggctccaatg gaagctccgc agcttccatg tgtcgaaagc ccaccccttt
1851 ctccccctct ctctcacccc ccctcctctc ctgagctcat cgtctaccgc
1901 ccccgacgtt ccgcctctct ttccccccat tcacatcatc ccggagcccg
1951 agtccgcttc tcctccttcc gaagccgctc tttctctccc cgccgatctt
2001 ccccagccca atctcaccgc cccctctctg acccccaccc cagctccaac
2051 ttccgaagcc agctctcaag ctacttcggc gactccccta cccccagctg
2101 ttacctcaat cgattctccc tccttgactc aggcctccat tcctcctcag
2151 tctgcacaga ctggctgccc aagccccagt gaaattcttt ttcctgaaag
2201 ctcagggagc ccgactgtcc tcccaaccgg ggctctcacc ttctccaact
2251 ctccctcatc cccccaaacc tccctccagt ccaagaagag tcccccgccc
2301 accccccttg agtctgaccc ctcttgcacc ggccctgtgg tgcctttttc
2351 tgaggctttc ccagcctact actactctga cacggcctcc ttccacacac
2401 gcgtcagatg cctccccccc tctcaaatcg cagtgccagc cctctgttgc
2451 ctcctggaag ccttctcctc cgagaccaag ctcccagttg acgacttgtg
2501 gctcacgcta cgatctcacc tccctgactc cctgctttcc aactctgaga
2551 ttagcaccta tggtctttca acagacttgc tcaccgctct ctgttttttt
2601 taccacctgc gctgctctct ccacaccaat tctggagtct tgctcttcgg
2651 aattcaaaat tccgaacaac acatctgcat cacacacact tctggccccc
2701 cagcccacta ttctcccgga gcccgcttga acggctcggc cccgcgttcc
2751 aaccctctca acagcccatt ggttcgcgct gccctgcgct tcaaatacca
2801 aaatcacttt ctaccctttg agcgtgctca tgccttcacc acttctctcc
2851 cccatgccaa aaacctgatc tccaacatga agaacgggtt cgatggcatt
2901 ctctcctccc ttgactcccc ctcttcttcc ggtccttccc ctcgcgagaa
2951 actgttcgcc atcgacgctc tcatagactc cacccaagcc cgcactgtac
3001 caatcatcca catcgctggt ttcgctggtt gcggcaagac tcaccccatc
3051 caacagcttc tccgcactcc cctctttcgc gacttccgtg tctcctgccc
3101 caccacagac ctccggtctg agtggaagga tgacatgaag ccttcccccc
3151 ctaatgtctg gcgcttctcc acctgggagt cctctctcct gaagacctcc
3201 agcgtgctcg tcatcgacga ggtttacaaa ctccctagcg ggtacctaga
3251 cctctccatc ctctctgacc ccgccatcca actcgtcatc ctgctcggcg
3301 accctctgca aggcgaatac cactccacct ctctttccag ctcgaactct
3351 cgcctggaat ccgaaatcac acgcctctcc cccttcatcg attgctactg
3401 ctggtggtcc taccggatcc ctcaaagcgt cgctgaagtc ctcgacgtca
3451 cttcattcaa ccccacccga ggtttcattc gcgcgtcact gactcaccct
3501 cagaacagca aaaacctcgt caactccatc gctacagcca acgccttgca
3551 gcacatgggc caccatgcca tgaccatcag ctccagccag ggagtaacct
3601 tctccgaagc taataccatc ctcctcgacc gcaacaccaa ccagctctct
3651 cccaacacct gcctcgtagg tctcacccgt tctcggacgg gtgttatttt
3701 tgttggcaat cttcacctcg cctccaactc attcggaacc tgctacatct
3751 tctctcgcgc cctctccgga cagccgattg actatgccag cctcttcccc
3801 agagtcttcc ccacccttcg acgcattttc tcccccatca cctctcgaaa
3851 gacccgtctt ctgggcggtt tttctctcgt gagccatgac accaacctgc
3901 ccctcttcgc tcgtctgctg gcttttcgtt ctctctctct tcccccccat
3951 atccccgtct cccactcctc agatgttttg atcacttctg cccaagtctt
4001 ctccacactt gaggagtccc gactctccac ccttcatctt ccccccaccc
4051 gcctccccct tcactatgac cttcctcccg ccgctccctc accccccccc
4101 gctcctgcag ttgacttctc tggtctcacc ccaatctctc atgccttcgc
4151 cggagagttt ttcgactctt tggccgcttt cttccttccc cctcacgacc
4201 ctcaaactcg cgaacaccct gacccctcca ttcagtccaa ccaattccct
4251 tgggtcgatc ttccctttga gctctcttgt cagcccagtt ctctcatagc
4301 cgccaaacat tctccatctt ccgaccctct gctgctctcc gcctccctct
4351 ccaaacgctt aaggtttcgc ccttccgaga atccatactc catcacccca
4401 atggatcagc ttctcggcga gcaccttttc gcctctttgc agagggctta
4451 caaaaggcct gttgagcaga ttcttccttt ccatcctgag ctattcgccg
4501 agtgcatctg cgcgaacgag tatgctcagc tctcttccaa gacccaagcc
4551 accatagtcg ccaaccacac ccgctccgac cctgactggc gcttcaccgc
4601 tgttaaaatc tttgccaagt cccaacacaa ggtcaatgat ggttccatct
4651 tcggctcctg gaaggcctgc caaacattag ccctgatgca cgactacgtg
4701 atccttgtgc tcggacctgt caagaagtac cagcgcttat tcgacgaccg
4751 cgaccgcccc cccaatctct acatccatcg tggccaaacc cctctagacc
4801 tttcccactt ctgctcctcc cactccctgc cttcgaagtt cgtggccaac
4851 gactacactt cctttgacca atctcaaagg ggtgaagccg tcgtcctcga
4901 acttcttaaa atgcagcgtc tctccattcc ctctcatctc caggccctcc
4951 atcttttcct caaaaccaac gtccgaacgc aattcggccc actcacctgc
5001 atgcgtctga ccggcgaacc cggcacctat gacgacaaca ctgactacaa
5051 tctggccacc atttttagtc agtacgccat aaccgaccaa ccagtcttcg
5101 tctcaggtga tgattccgtt attgcttcag aaccccctca atctccttct
5151 tggcgtgacg tgctccccat gcttaatctc cgttttaaga ctgagcacac
5201 ccgctaccct ctcttctgcg gctattacct gactcctcag ggcgccatcc
5251 gcaaccccct tgcccttttc gccaaactga tgatctgcgt tgacgacgga
5301 agtgtcaaag acaagattct gtcctacatt tccgagttct ccgtcggtca
5351 ctcagccggt gacactattc tccatcacct cccctcccac cttctcccct
5401 accactccgc ctgcttcgac ttcttctgcc gctttgccac tccctctcaa
5451 aagttgaccc tcagcctcga ccctattccc gaatccattt ggatgtcctt
5501 gatccacaag attcgctggg cgagccgctc tctattctcc caacttcccc
5551 agaaagcccg tgactacctt atctcccgga gtcatctgtc ttcatcctcc
5601 cttctccatt ctgactccca acctgagtct gaattgctcc cctttctcaa
5651 ttaatgcaat catgtctgcc aacgtcccag tcaaagtgcc ccagccctcc
5701 gtcccagccc ccgcaaagtc cctccccacc ccatcttcag agctctctag
5751 cgccatcgtg ctccccttcc agattctcgc caccaccttc ggctctgtcg
5801 aaaccgcctt ccaaatctcc ctctcctctc acccctccct ccagaagctc
5851 atggctccgt accgccacgt gcagctcgtg gaatgcgaag ccgtcttctg
5901 ccccaactcc ttcgctgtct cagcccccat caccattaat gccgtctgga
5951 ccactgccaa ctcccctgct tcccccgtcg atatactcca gatctacggc
6001 ggccgcccct tcaccttcgg cggctccctc caatccacct ctgaatccat
6051 tctccctctc ccagggaact tcacaaacgc catgctcaag gacagcgtgg
6101 cgtacctcga cacccccaaa cttctcgcct attctcctgt cccctcctct
6151 ccctctaagc tgccgtcagt tcacctcctg atccgaggta aactccgcct
6201 ctcttccccc ctcctcctcg cctccccgtc ctcttagatc cgtggtgcca
6251 acgtcatggc atagagtttc gctgtcctct caaatcgaac agcaatggtc
6301 gtgcccgacc cgctcggaat gcgataattc tggtgcttgc cccccaccta
6351 aaaagggggc acca