Sequence of DPV Cucumber mosaic virus

Cucumber mosaic virus segment 3, complete sequence.

ACC No: AF198103

Dated: 2003-05-29 | Length: 2203 | CRC: 1439815138

                !!NA_SEQUENCE 1.0
ID   AF198103   standard; genomic RNA; VRL; 2203 BP.
XX
AC   AF198103;
XX
SV   AF198103.1
XX
DT   09-APR-2002 (Rel. 71, Created)
DT   29-MAY-2003 (Rel. 75, Last updated, Version 2)
XX
DE   Cucumber mosaic virus segment 3, complete sequence.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC   Cucumovirus.
XX
RN   [1]
RP   1-2203
RA   Yang R., Jones M.G.K., Dwyer G.I.;
RT   ;
RL   Submitted (25-OCT-1999) to the EMBL/GenBank/DDBJ databases.
RL   WA State Agricultural Biotechnology Center, Murdoch University, South
RL   Street, Murdoch, WA 6150, Australia
XX
DR   GOA; Q8QVF6.
DR   GOA; Q8QVF7.
DR   SPTREMBL; Q8QVF6; Q8QVF6.
DR   SPTREMBL; Q8QVF7; Q8QVF7.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2203
FT                   /db_xref="taxon:12305"
FT                   /mol_type="genomic RNA"
FT                   /note="originally found infecting Lupinus angustifolius
FT                   subgroup: II"
FT                   /organism="Cucumber mosaic virus"
FT                   /isolate="LY"
FT                   /segment="3"
FT   CDS             97. .936
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8QVF7"
FT                   /db_xref="SPTREMBL:Q8QVF7"
FT                   /note="Orf3a; MP"
FT                   /gene="3a"
FT                   /product="movement protein"
FT                   /protein_id="AAM10539.1"
FT                   /translation="MAFQGTSRTLTQQSSAASSDDLQKILFSPDAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPQVTSNNLLSFFKSGYDAGELRSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLKIYLADLGDKELSPIDGQCVTLHNHELPALISFQHTYDCPMELVGNRHRCFAVVVE
FT                   RHGYIGYGGTTASVCSNWQAQFSSKNNNYTHAAAGKTLVLPYNRLAEHSKPSAVARLLK
FT                   SQLNNVSSSRYLLPNVALNQNASGHESEILNESPPIAIGSPSASRNNSFRSQVVNGL"
FT   CDS             1225. .1881
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8QVF6"
FT                   /db_xref="SPTREMBL:Q8QVF6"
FT                   /note="Orf3b; CP"
FT                   /gene="3b"
FT                   /product="coat protein"
FT                   /protein_id="AAM10540.1"
FT                   /translation="MDKSGSPNASRTSRRRRPRRGSRSASGADAGLRALTQQMLRLNKT
FT                   LAIGRPTLNHPTFVGRESCKPGYTFTSITLKPPEIEKGSYFGRRLSLPDSVTDYDKKLV
FT                   SRIQIRINPLPKFDSTVWVTVRKVPSSSDLSVAAISAMFGDGNSPVLVYQYAASGVQAN
FT                   NKLLYDLSEMRADIGDMRKYAVLVYSKDDKLEKDEIVLHVDVEHQRIPISRMLPT"
XX
SQ   Sequence 2203 BP; 501 A; 513 C; 524 G; 665 T; 0 other;

AF198103  Length: 2203  September 11, 2003 13:46  Type: N  Check: 213  ..

       1  gtaatcttac cactttcttt cacgtcgtgt cgcgtcagtc cacgctgtgt
      51  gtgtgcgtgt gttagttagt gtgtcgtgtt tagattaccg aaggttatgg
     101  ctttccaagg taccagtagg acgttaactc aacagtcctc ggcggcgtcg
     151  tctgacgact tacagaagat attattcagc cccgatgcca tcaagaagat
     201  ggctactgag tgtgacctag gtcgacatca ttggatgcgc gcggataacg
     251  ccatctctgt cagacctctc gttccccaag taaccagtaa caatttattg
     301  tctttcttta aatctgggta tgatgccggt gaattgcgct ctaaaggcta
     351  tatgagcgtt cctcaagtgc tgtgtgccgt taccaggacg gtttctacgg
     401  atgctgaggg ttctttgaaa atttatttgg ctgacctagg tgataaagaa
     451  ttatccccaa ttgatgggca atgtgttact ttacataatc atgagctccc
     501  tgctttgata tctttccaac atacctacga ttgccccatg gaattagttg
     551  gcaatcggca tcgatgtttc gcggtagtcg ttgagagaca tggttatatt
     601  ggttacggtg gtaccactgc tagcgtgtgt agtaactggc aagctcagtt
     651  ttcttcaaag aataataatt acacacacgc cgctgctggt aagactcttg
     701  tgttgcctta caacagatta gctgagcatt cgaaaccgtc agccgtcgct
     751  cgcctgttga agtcgcagtt aaacaacgtt agctcatcgc gctatctttt
     801  gccgaacgtt gctcttaatc aaaatgcgtc tgggcacgag tccgagattt
     851  taaacgaaag ccctcccatc gctataggga gtccgtccgc gtcccgtaac
     901  aatagcttca gatcgcaggt ggttaacggt ctttagtgtt ttgttacgtt
     951  gtacctatgt atatatatac tacgtttatc ttccgtatgt aaatacatgt
    1001  gagtctatag tcccgtgtga gttgtaacgg tagacatctg tgacgcgaag
    1051  ccgcttgaag atttcccatc tggggttagt aagtccacgt cacagtttta
    1101  aggttcaatt ccttttgctc cctgttgggc ccccttactt tctcatggat
    1151  gcttctccgc gagttagcgt ttagttgttc acctgagtcg tgtttgtctt
    1201  tgtattttgc gtcttaatgt gcctatggac aaatctggat ctcccaatgc
    1251  tagtagaacc tcccggcgtc gtcgcccgcg tagaggttct cggtccgctt
    1301  ctggtgcgga tgcagggttg cgtgctttga ctcagcagat gctgagactc
    1351  aataaaaccc tcgccattgg tcgtcccact cttaaccacc caaccttcgt
    1401  gggtagagaa agttgtaaac ccggttacac tttcacatct attaccctga
    1451  aaccgcctga aattgagaaa ggttcatatt ttggtagaag gttgtctttg
    1501  ccagattcag tcacggacta tgataagaag cttgtttcgc gcattcaaat
    1551  caggattaat cctttgccga aatttgattc taccgtgtgg gttacagttc
    1601  ggaaagtacc ttcatcatcc gatctttccg tcgccgccat ctctgctatg
    1651  tttggcgatg gtaattcacc ggttttggtt tatcagtatg ctgcgtccgg
    1701  agttcaggcc aacaataagt tactttatga cctgtccgag atgcgtgctg
    1751  atatcggcga catgcgtaag tacgccgtcc tggtttattc gaaagacgac
    1801  aaactagaga aggatgagat tgtacttcat gtcgacgtcg agcatcaacg
    1851  aattcctatc tcacggatgc tcccgactta gtccgtgtgt ttaccggcgt
    1901  ccgaagacgt taaactacac tctcaatcgc gagtgctgag ttggtagtat
    1951  tgctttaaac tgcctgaggt ccctaaacgt gttgttgcgc ggggaacggg
    2001  ttgtccatcc agcttacggc taaaatggtc agtcgtgtct ttcacacgcc
    2051  gatgtcttac aaggtgtcga ggtacccata gaaatcatct cctagatttc
    2101  ttcggaaggg cttcgtgaga agctcgtgca cggtaataca ctgatattac
    2151  caagagtgcg ggtatcgcct gtggttttcc acaggttctc cataaggaga
    2201  cca