Sequence of DPV Rice tungro bacilliform virus
Rice tungro bacilliform virus Chainat isolate, complete genome.
ACC No: AF220561
Dated: 2002-01-02 | Length: 8010 | CRC: 94134492
!!NA_SEQUENCE 1.0
ID AF220561 standard; circular DNA; VRL; 8010 BP.
XX
AC AF220561;
XX
SV AF220561.1
XX
DT 02-JAN-2002 (Rel. 70, Created)
DT 02-JAN-2002 (Rel. 70, Last updated, Version 1)
XX
DE Rice tungro bacilliform virus Chainat isolate, complete genome.
XX
KW .
XX
OS Rice tungro bacilliform virus
OC Viruses; Retroid viruses.
XX
RN [1]
RP 1-8010
RA Nathwong B., Ratanakarn W., Chettanachit D.;
RT "Complete Genomic Sequence of Rice Tungro Bacilliform Virus - Chainat
RT Isolate from Thailand";
RL Unpublished.
XX
RN [2]
RP 1-8010
RA Nathwong B., Ratanakarn W., Chettanachit D.;
RT ;
RL Submitted (04-JAN-2000) to the EMBL/GenBank/DDBJ databases.
RL Plant Genetic Engineering Unit (BIOTEC, NSTDA), Kasetsart University
RL Kamphaengsaen Campus, Kamphaengsaen, Nakhon Pathom 73140, Thailand
XX
FH Key Location/Qualifiers
FH
FT source 1. .8010
FT /country="Thailand"
FT /db_xref="taxon:10654"
FT /note="Badnavirus"
FT /organism="Rice tungro bacilliform virus"
FT /strain="Chainat isolate"
FT /clone="pRTBVCN"
FT CDS <68. .667
FT /codon_start=1
FT /note="translation start site unknown"
FT /gene="ORFI"
FT /product="P24"
FT /protein_id="AAL55649.1"
FT /translation="VLKRNLTSQNIESRYEKLEFLDLAVWGKEKKQKYLLSTDNISFYC
FT YFDTSKTSESERKHTFHSDNKQLNSIVDLIIKHSEKTKNIKEELEKYSQFLDKILDLKP
FT TKKQVEKLLENQNLISKNFDYIKEQNAQLEKSLRKTVKLEDSINTLLVEIQQARPKEVE
FT LRTLKIAEQNSKAIEKFEQEIKDLREILEYLKHQST"
FT CDS 664. .996
FT /codon_start=1
FT /gene="ORFII"
FT /product="P12"
FT /protein_id="AAL55650.1"
FT /translation="MSADYPTFKEALEKFKNLESDTAAKDKFNWVFTLENIKTTADVNL
FT ASKGLVQLYALQEIDKKINNLTAQVSKLPTTSGSSSAGTIVPAGSNTQGQYKAPPKKGI
FT KRKYPA"
FT CDS 993. .6026
FT /codon_start=1
FT /gene="ORFIII"
FT /product="P194"
FT /protein_id="AAL55651.1"
FT /translation="MSLRPFTGTSRTITQDSTSESNIKKGKNSTKRELIEEVDVNQDVE
FT NFDWKKLSGIKPNKLYEKNWQEKVKLKQQSIVSAYKEEAISVTHNAYTTTLFPQEVIKN
FT VKNQGKLYYHIGMMAIGVKGLKGLHRRKIGTKVMIMFYDDSFGKAREASIGSIEMDMNA
FT GCGVFYSCPDFAKYIKDLSHLKIGIQTLGYENYEGKNLSVAIKTIGRLTTNIQSKYKIN
FT VKDIVEQISSQGIIMVAPMEIDSSHLDGNEWDLSKFLNQENTSRVPTKALIYQNLHGGE
FT SLRFSNYKQTRMHDPTENNSDEDEDLKILGEQLNIKMARFYTMETPEEELRAAVQQLEK
FT EKQAMIEKLEAKMKESSKMAIVEDNFNPNNEYLEDTYSEYEDLEFERLGLTGWEDLDQD
FT SIETEEITEWENPNQVLHREIKAYKSVSEQIEDIFGELLKEHGNYDMALKNLEEKYDLD
FT KIEKAKSIEEIAKSSTSSEIRPTKRPKEEQTAYEDDMRDDWKRKELTVNPIEASKDRNF
FT ERIGSSYKKNFYPSRSEILNLDNVPPQFYYDQLVTWEGIVKNEWEARKKDGMDMWSWMD
FT GRITGLVLYLVQDWISKNQAAYNDIKSRGDRPENFVKMVKDRFLIEDPTDERRTALQRL
FT AQRELEALNCEDPTKIQPFMAEYFKKASEAKKGFDIVYVERLFDRLPEAVGKVVKADFV
FT KDGNSYEAGIGIAVSYISTWMRAKCIKETEAKTQKKASLAFCRSIYTIGDYKKRKILKR
FT VTNYNKNRRKNYVRRPSIKKKCRCYICQDENHLANRCPRRYTNQARASLIDGLDEDIVS
FT IASDDEDIENFLEIIELDEFIAHSSQEHEHTWEVGGKKDKVCEICSYFTDYNKTVSCKI
FT CETQYCKTCSDQLAIEVREVKKPTKEEEMLEDLKLNVKNLEFRVTILEHKAEMQNIQDK
FT FEAMQIRSKPEITEIPTTSLAMRANESNYIKTSINKTAGCYVETKISFNNENRIITALI
FT DSGSTHNIICPTLIPASWINSTHREIIMFAVDNSKYNLNQELIDDIKLQFQEVDETFGI
FT KYKLGQTYVAPKPTKTFIIGHRFLTNENGSVTIHKDYITIQKTTGIYPTARHELKSEFA
FT RKHGGRPPLFSNIPETYNKIPHLHSYQPPILGYKNEIGNQSLITMVKELEALGFIGDDI
FT TKNRTNWVCDFKIINPDINITCATIPYTPADKEVFEKQIKELLDNKLIKKADPTCRHRT
FT AAFIVRNHSEEVAQKPRIVYNYKRLNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKA
FT GFHHMKLKDDFKDWTTFTCSEGLYTWNVCPFGIANAPCAFQRFMQESFGDLKFALLYID
FT DILIASNNEKEHIEHLKIFFNRVKEIGCVLSKKKSKMFLKEVEYLGVEIKEGKINLQPH
FT IVDKIKKFDKNKLNTLKGLQAYLGLLNYARGYIKDLSKLVGPLYKKTGKNGQRIFNKED
FT WNIIFKIEREVSKIKPLERPKETDYIIIETDASEEGWGAVLICKPDKYSGKDTEKIAGY
FT ASGNFGEKKTWTSLDYEIEAINEALNKFQIYLDKDFTIRTDCEAIVKGIKTEDYKKRSK
FT TRWIKLRDNLLKDGYKPTFEHIKGNKNFLPNFLSREGDFILKCLQNPDSTESYSIDSSE
FT SIPLYIDSKESHSIESDDSIPLYRDKLLPLVERLKEKSA"
FT CDS 6047. .7216
FT /codon_start=1
FT /gene="ORFIV"
FT /product="P46"
FT /protein_id="AAL55652.1"
FT /translation="MNIEYPYSIHIIDKNKVPIYDQGNLFHTEKSARLSHESRGLLDHL
FT FTFSSDNTERVRKLHILADYLYLLESERESYKNEWISLNDQVSLLQKQNSELRARIATN
FT KEIIEGLREPVKKPIYTTQDKERLRVFFCEERSMEYIYYHIKRLAQQSYYSHLNKLQKD
FT CEPFRGIYMSFLTNVKFLVLCEAGYWTVPDIETNTTESLLSLSQKKGEDLLQKGVVIFN
FT ELEGGYQLSPRFIGDLYAHGFIKQINFTTKVPEGLPPIIAEKLQDYKFPGSNTVLIERE
FT IPRWNFNEMKRETQMRTNLYIFKNYRCFYGYSPLRPYEPITPEEFGFDYYSWENMVEED
FT EGEVVYISKNTKIIKVTKEHAWAWPERDGDTMSCSTSIEDEWIHRMDNA"
XX
SQ Sequence 8010 BP; 3276 A; 1215 C; 1451 G; 2068 T; 0 other;
AF220561 Length: 8010 January 15, 2002 16:51 Type: N Check: 1571 ..
1 tggtatcaga gcgatgttcg aactttaagg gaaaatagaa tacaatctag
51 tcaaactaat tacataagtt ctgaagagga atcttacttc tcaaaatatt
101 gagtcgcgtt acgaaaaact tgaattctta gacttagcag tctggggaaa
151 agagaaaaaa caaaaatatt tattatctac tgataatatt agcttttatt
201 gttactttga tactagtaaa accagtgaat cagaaaggaa gcataccttt
251 cattctgata ataagcaact taatagtatt gtagatctta ttattaagca
301 ttctgaaaaa accaaaaata ttaaggaaga attagaaaaa tatagccagt
351 tcttagataa gatattagac ttaaaaccta ctaaaaaaca agttgaaaaa
401 ctactagaaa atcaaaactt aattagcaaa aattttgatt atattaaaga
451 acaaaacgct cagctagaaa aatccctaag aaaaacagtt aagttagaag
501 actctattaa tactctatta gtagaaatac aacaagctag accgaaggaa
551 gtagaattaa gaactcttaa gatagcagaa caaaactcta aggcaataga
601 aaaatttgaa caagaaatta aggatctaag agaaatacta gaatacctca
651 agcaccaatc tacatgagcg ctgattatcc aactttcaag gaagcccttg
701 aaaagttcaa aaatctagaa tcagacacag ccgctaaaga taagtttaat
751 tgggtattta ccttagaaaa tataaaaaca actgcagacg taaatctagc
801 atctaaggga ttagtacaac tttacgcttt acaagaaatt gataaaaaga
851 taaataatct tacagctcaa gttagtaagt tacctacaac tagtggaagt
901 agttcagcag gaactatagt acccgcagga agtaacaccc aaggtcaata
951 taaagcacca cctaaaaaag gaattaagag aaaatatcca gcatgagtct
1001 tagaccattt actggcactt ctagaactat aacccaagat tcaacctctg
1051 aatctaatat taaaaaaggg aaaaattcaa caaaaagaga attaatagaa
1101 gaagtagatg ttaatcaaga tgtagaaaac tttgattgga aaaaattatc
1151 aggaattaaa cctaataaac tatatgagaa aaattggcaa gaaaaggtta
1201 agttaaaaca acaatctata gtttcggcat ataaagaaga agctattagt
1251 gtaacccata atgcatatac tactacttta tttccacaag aagtaattaa
1301 aaatgttaag aatcagggaa aattatatta ccatataggc atgatggcca
1351 taggagttaa aggacttaaa ggacttcata gaagaaaaat aggaactaaa
1401 gtcatgataa tgttttatga tgatagtttc ggcaaagcta gagaagctag
1451 cattggatca atagaaatgg atatgaacgc aggttgcgga gtattctact
1501 cctgccccga ctttgccaaa tatattaaag atttatcaca tcttaagata
1551 gggatacaaa ccctaggata tgaaaattat gaaggaaaaa acctttcggt
1601 agcaatcaag actataggaa gattaactac caatatacaa tcaaaatata
1651 agataaatgt aaaagatatt gtagaacaaa tatcatcaca aggaatcatt
1701 atggtagcac ccatggaaat agattcatca cacttagatg ggaatgaatg
1751 ggatcttagt aagttcttaa atcaggaaaa cacaagtaga gtcccaacta
1801 aagccttaat atatcaaaat ctacatggag gagaatctct aagattttca
1851 aactataagc aaactagaat gcatgatcct actgaaaata attcagatga
1901 ggatgaagat ttaaaaatct taggagaaca actaaatatt aaaatggcaa
1951 gattttatac tatggaaact ccggaagaag aattaagagc agcagttcaa
2001 caattagaaa aggaaaaaca agccatgata gaaaaattag aagctaaaat
2051 gaaagaatca tcaaaaatgg caatagtaga agataacttc aatccaaaca
2101 atgaatatct agaggataca tattctgaat atgaagattt agaatttgaa
2151 agattaggat taaccggatg ggaagacctg gatcaggact ccatagaaac
2201 cgaagaaata actgaatggg aaaatcctaa ccaagttctt catagagaaa
2251 ttaaagccta taaatcagta tcagaacaaa tagaagatat atttggagaa
2301 ttattaaaag aacatggaaa ctatgatatg gcccttaaaa acctagaaga
2351 aaaatatgat ctagataaaa tagaaaaggc caaatctata gaagaaatag
2401 ctaaatcatc cacatcatca gaaattaggc caactaaacg tcctaaagaa
2451 gaacaaacag cctatgaaga tgacatgaga gatgattgga aaagaaaaga
2501 attaacagta aatcccatag aagcctcaaa agataggaat tttgaaagaa
2551 taggaagttc ttataagaaa aatttctatc ccagcagaag tgaaatatta
2601 aacttagata acgttccccc acaattttac tatgaccaac tagtaacctg
2651 ggagggaata gttaaaaatg aatgggaagc acgtaagaaa gatgggatgg
2701 atatgtggtc ttggatggat ggtaggataa caggattagt tttatattta
2751 gtccaagatt ggatatctaa aaatcaggca gcttataatg atataaaatc
2801 tagaggagat agaccagaaa actttgtaaa aatggtaaaa gatagattct
2851 taatagaaga cccaacagat gaaagaagaa cagcactaca aaggttagca
2901 caaagagaat tagaagcctt aaattgcgaa gatcctacta aaattcaacc
2951 atttatggct gaatatttta aaaaagcttc agaagccaag aaaggattcg
3001 atatagttta tgtagaaaga cttttcgata gattaccaga agcagtagga
3051 aaagtagtaa aagccgactt tgtcaaagat ggtaattcct atgaagcagg
3101 aataggaata gcggtttcat atatatccac atggatgaga gcaaaatgca
3151 ttaaggaaac agaagctaaa actcaaaaga aagcatcctt agcattctgt
3201 agatccatat atactatagg agattataag aaacgaaaaa tcttaaaaag
3251 agtaacaaat tataataaaa ataggaggaa aaactatgtc agaagaccca
3301 gtataaagaa aaaatgtaga tgttatatct gtcaagatga aaatcatcta
3351 gccaatagat gtcctagaag atataccaat caggctagag caagtctaat
3401 agatgggtta gatgaagata tagtatccat agcatcagat gatgaagata
3451 ttgaaaattt ccttgaaata atagaacttg atgagtttat agcacattct
3501 agtcaagaac atgaacatac atgggaagtt ggaggaaaga aagataaggt
3551 atgtgaaata tgcagttatt ttacagacta taataaaact gttagctgta
3601 aaatttgtga aactcaatat tgcaaaacat gttctgatca attagctata
3651 gaagtaagag aagttaaaaa acctaccaaa gaagaagaaa tgctagaaga
3701 tttaaaatta aatgttaaaa acctagaatt tagagtcact attctagaac
3751 ataaggcaga aatgcaaaat atacaagata aatttgaagc aatgcaaatt
3801 agaagtaaac cagaaataac agaaatacca acaacttcat tagctatgag
3851 agcaaatgaa tcaaattata taaaaacatc aattaataaa actgcaggat
3901 gttatgtaga aacaaaaatc tcatttaata atgaaaatag aatcataaca
3951 gcactaatag attctggttc aacacataat ataatatgtc caaccttaat
4001 cccagcatca tggattaata gcacacatag agaaatcatt atgtttgccg
4051 tagataatag caaatataat ttaaatcaag aactaataga tgatataaaa
4101 ttacaattcc aagaagttga tgaaaccttt ggaataaaat ataaattagg
4151 acaaacctac gtagcaccta agccaactaa aacattcata ataggacata
4201 ggttccttac aaatgaaaat ggtagtgtta caatccataa agattacata
4251 actatacaaa aaactactgg aatataccca acagcccggc atgaacttaa
4301 atcagagttt gcgcgaaagc atggtggacg cccgccatta ttttcaaaca
4351 ttcctgaaac ctacaacaaa attcctcatt tacattcgta tcaaccaccc
4401 atattaggat ataagaatga aatagggaat cagagtttaa tcactatggt
4451 aaaagagtta gaagcacttg gattcatagg agatgatata acaaaaaata
4501 gaacaaattg ggtatgtgac ttcaaaatta taaacccaga tattaatata
4551 acctgtgcaa caattccata tacaccagca gataaagaag tatttgaaaa
4601 acagataaaa gaattactag ataataagtt aatcaagaaa gccgatccga
4651 catgcagaca cagaacagca gcattcatag taagaaatca ttctgaggaa
4701 gtagctcaga aacctcgaat agtctataac tataaacgtt tgaatgacaa
4751 tatgcataca gatcctttta atatacctca taagatttca atgatcaatc
4801 tgatacagaa agctaatata ttttctaagt ttgatttaaa agcaggattt
4851 catcatatga aactaaaaga tgatttcaaa gattggacta cttttacctg
4901 ctcagaagga ctatatactt ggaacgtctg tccatttggt atagctaacg
4951 ctccttgtgc atttcaaaga tttatgcagg aatcctttgg agatttaaag
5001 tttgctttat tatatataga tgacatactt attgcatcca ataatgaaaa
5051 agaacatata gagcatctta agattttctt taatagagta aaagagatag
5101 gatgtgttct tagtaagaaa aaatcaaaga tgtttctaaa agaagtagag
5151 tatcttggag tagaaattaa agaaggtaag atcaaccttc agccacatat
5201 agttgataag atcaaaaaat ttgataaaaa taagctcaat actttaaaag
5251 gactacaagc atatttggga ttactcaatt atgccagagg atatattaaa
5301 gacctatcaa aactagtagg accactttat aaaaagacag gaaagaatgg
5351 gcaaagaatt tttaacaaag aagattggaa tattatcttt aagatagaaa
5401 gagaggtatc aaagataaag cctttagaaa gacccaaaga aaccgactac
5451 atcattatag agacagatgc gtcagaagaa ggatggggag cagtcttaat
5501 ctgtaagcca gataaatata gtggaaaaga cactgaaaaa atagcagggt
5551 atgcatcagg aaactttgga gaaaagaaaa catggactag tttagattat
5601 gagatagaag ccataaatga agccttaaac aagttccaaa tatatttaga
5651 caaagatttt acaatcagaa cagattgtga agcaatagta aaagggataa
5701 aaactgaaga ctataaaaag agatcaaaaa caaggtggat caagttaaga
5751 gataacctct taaaagatgg ttacaagcct acctttgagc atatcaaggg
5801 aaacaaaaac tttttaccaa acttcttatc ccgcgaggga gattttattt
5851 taaaatgtct tcaaaacccc gattctacgg aatcatattc tatagattcg
5901 tcagaatcaa ttccactata tatcgattcg aaagaatcac attctataga
5951 gtctgatgac tcaattccac tatacaggga caagcttctt cctctagtcg
6001 aaagactaaa ggagaaaagt gcttaactaa gatcggaggc atcaccatga
6051 atatagagta cccgtactca atccacataa tagacaagaa caaggttccg
6101 atctacgatc aaggaaatct cttccacact gagaagtctg caagactttc
6151 acatgagtct agaggtttgc tagatcatct ctttactttt tcgtctgata
6201 atactgagcg agttaggaag ctccacatat tagccgatta tctttaccta
6251 ttagaaagtg agagagagtc atataaaaat gagtggatta gcctgaatga
6301 tcaggttagt cttctacaaa aacaaaatag tgagttgagg gctaggatag
6351 ccaccaataa agaaataata gagggactga gagagccagt taaaaagcca
6401 atatacacaa cccaagataa agagaggctc cgtgttttct tttgcgaaga
6451 aagaagcatg gaatatatat actatcatat aaagaggcta gctcaacaga
6501 gctattattc tcatctaaat aagttacaga aggattgtga gccctttcga
6551 gggatctaca tgtctttctt aactaatgtt aaattcctag tactatgtga
6601 agccggatac tggactgttc cagatataga aactaatact acagaatctt
6651 tattaagctt atctcagaag aaaggagaag atctgctaca aaagggagtg
6701 gtaatattta atgagcttga aggaggatat caactttctc caagattcat
6751 tggagacctt tatgctcatg gttttattaa acaaataaac ttcacaacca
6801 aggttcctga aggattaccg ccaatcatag cggaaaaact tcaagactat
6851 aagtttcccg gatcaaacac cgtcttaata gaacgagaga ttcctcgctg
6901 gaattttaat gaaatgaaga gagaaacgca gatgaggact aatctatata
6951 tcttcaagaa ttatcgctgt ttctatggct attcaccatt aaggccatat
7001 gaacctataa ctcctgaaga atttgggttt gattactaca gttgggaaaa
7051 tatggttgaa gaagacgaag gagaagtagt ctacatctcc aagaatacta
7101 agattatcaa agttactaaa gagcatgcat gggcttggcc agaacgtgac
7151 ggggatacaa tgtcctgcag cacatcaata gaagacgaat ggatccatcg
7201 tatggacaat gcttaaagta gctttttcta aagcaacttt aagtgcgaat
7251 caataaagaa ggaccagaag atataaagcg ggaacatcgt catgtgctac
7301 ctcgtggcta gcatctttag catctttact ttacaattat tgtaagcatg
7351 ggtaatgacc aatgtacccc tggactccag tatataagga gccctagagt
7401 attgtaatgg atcatcgatc aagcaagcga gagctcaact tctaaaagag
7451 agcaagagag gagcttatcc tctcaacccc tcttcaagaa gcaaaggcga
7501 tcaatggctc aggtcagtga gtagtcgtct ttaaggttcc tctaggaacc
7551 tctgtgtaat atgtttgtac ttaagattgt atttctcaaa acctatccgc
7601 tgcatgaata aagctcttat attcatccta cacccttgtg ataaaacatg
7651 aagtcatacc cgttcaaaga ttaaatgttc taagaatact tcgaagcatt
7701 gaaaaggggg ctaaaggggg aaaaagtacc gtcaggccgt gttatggcaa
7751 gggaagaagt accatgaata ccctatagat gttagaagga aggtaagaac
7801 taagtatctt atgaacaatg ggtagctgat ttctgattat cattaacaag
7851 tatcgttata atctataagc tttgaaagat ctgctagtgt ggataccaaa
7901 aggctgtcgt ggttcgccca gtcgacggat gaggttataa acgaagcact
7951 agtaggtaac taagaggctt agggatgagt aacgagaaaa gttagggggg
8001 tgcctagaaa