Sequence of DPV Rice stripe virus
Rice stripe virus isolate BS segment 4, complete sequence.
ACC No: AF221830
Dated: 2003-05-29 | Length: 2157 | CRC: -794547063
!!NA_SEQUENCE 1.0
ID AF221830 standard; genomic RNA; VRL; 2157 BP.
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AC AF221830;
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SV AF221830.2
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DT 03-FEB-2000 (Rel. 62, Created)
DT 29-MAY-2003 (Rel. 75, Last updated, Version 4)
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DE Rice stripe virus isolate BS segment 4, complete sequence.
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KW .
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OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN [1]
RP 1-2157
RA Lin H., Wei T., Wu Z., Lin Q., Xie L.;
RT "Isolate variability of rice stripe virus: implication of origin of RSV in
RT China";
RL Unpublished.
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RN [2]
RP 1-2157
RA Lin H., Wei T., Wu Z., Lin Q., Xie L.;
RT ;
RL Submitted (06-JAN-2000) to the EMBL/GenBank/DDBJ databases.
RL Plant Protection, Institute of Plant Virology, Fujian Agricultural
RL University, Fuzhou, Fujian 350002, P.R.China
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RN [3]
RC Sequence update by submitter
RP 1-2157
RA Wei T., Lin H., Xie L.;
RT ;
RL Submitted (12-FEB-2003) to the EMBL/GenBank/DDBJ databases.
RL Plant Protection, Institute of Plant Virology, Fujian Agricultural
RL University, Fuzhou, Fujian 350002, P.R.China
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DR SPTREMBL; Q805M6; Q805M6.
DR SPTREMBL; Q9J0W8; Q9J0W8.
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CC On Feb 12, 2003 this sequence version replaced gi:6857183.
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FH Key Location/Qualifiers
FH
FT source 1. .2157
FT /db_xref="taxon:12331"
FT /mol_type="genomic RNA"
FT /organism="Rice stripe virus"
FT /isolate="BS"
FT /segment="4"
FT CDS 55. .591
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9J0W8"
FT /note="disease-specific protein; putative pathogenicity
FT protein; NSP; major non-capsid protein"
FT /product="SP protein"
FT /protein_id="AAF30288.1"
FT /translation="MQDVQRTIEVSVGPIVGLDYTLLYDTLPETVSDNITLPDLKDPER
FT VTEDTKKLILKGCVYIAYHHPLETDTLFIKVHKHIPEFCHSFLSHLLGGEDDDNALIDI
FT GLFFNILQPSLGGWITKNFLRHPNRMSKDQIKMLLDQIIKMAKAESSDTEEYEKVWKKM
FT PTYFESIIQPLLHKT"
FT CDS complement(1246. .2106)
FT /codon_start=1
FT /db_xref="SPTREMBL:Q805M6"
FT /note="putative 30 kD movement protein"
FT /product="NSVC4 protein"
FT /protein_id="AAO39435.1"
FT /translation="MALSRLLSTSKSKVLYDDLSEESQKRVDNKNRKSLALSKRPLNQG
FT RVTIDQAATMLGLEPFSFSDVKVNKYDMFIAKQDYSVKAHRKATFNILVDPYWFHQPLT
FT HYPFFRVATFAMVWIGIKGRASGITTLRIIDKSYVNPSDQVEVEVRYPISKNFAVLGSL
FT ANFLALEDKHNLQVSVSVDDSSVQNCVISRTLWFWGIERTDLPVSMKTSDTVMFEFEPL
FT EDKAINHLSSFSNFTTNVVQKAVGGAFTSKSFPELDTEKEFGVVKQPKKIPITKKSKSE
FT VSVIM"
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SQ Sequence 2157 BP; 693 A; 449 C; 401 G; 614 T; 0 other;
AF221830 Length: 2157 January 7, 2004 15:42 Type: N Check: 5519 ..
1 acacaaagtc cagggcattt gtacaacgat ccagcaattt aatcagaatc
51 gaagatgcaa gacgtacaaa ggacaataga agtttctgtt ggtcctattg
101 taggcctaga ttacactctg ttgtatgaca ctctgcccga gactgtgagc
151 gataatatta ctctacctga tttgaaagat ccagagagag tcacggaaga
201 tactaagaag ctaatactca aaggctgtgt ttatatagca tatcatcacc
251 ccttggagac tgacactctc ttcattaaag ttcacaagca tataccagag
301 ttttgtcact ccttcctatc acaccttcta ggaggtgaag atgatgacaa
351 tgctctgata gacattggcc tgttcttcaa catcttgcaa ccctctctgg
401 gcggttggat aaccaagaat tttcttagac acccaaacag gatgtctaag
451 gaccaaatta aaatgctcct ggatcagatt ataaagatgg ctaaggcaga
501 gagctcagac acagaagagt atgagaaagt gtggaagaag atgccaactt
551 attttgagtc aatcatccaa cctcttctac acaaaacata gtttattgca
601 tatcacactt tccacccacg agtgcttgca ttctagaagt ggagccagtt
651 tgggttgacc ttcttgtgtg aaaatacgag tatattctat agtctgaaca
701 atatacttga tgtttgtcca cttaaacttg acagtttgta aataattgtg
751 tgtgattgtg tgtgtgtgca tatatgttaa tatataactg tgcacaggtg
801 tgtagatata aacacttgaa acgaataaat taatatattc ctatcaactc
851 atatacatac ttgtgagtct tagctcctca ctatacaaac atagaaacat
901 gagagtatca tacaagaccc attgcaaata ctaataactt tgttttcaca
951 atgtcaaaac taaaacctga aataccaaaa acatgagaaa atatgaaatc
1001 aaaaacaatg aatggtgcta agcaccacat ccggatgtgg tgcgtagcac
1051 cattttcata acattaatct ataacctact agtagcaaaa acacccaaat
1101 gcatgaagtg catagcactc ttttatggat tgactaccat aattacgtga
1151 atgcatagca ttctcctgaa aaaaagcaga gcagaacaga ccacatcaag
1201 tgcgtagcac tagatgttag catactcagg aactggttat ctcaactaca
1251 tgatgacaga aacttcagat tttgatttct ttgtgatagg tatcttcttt
1301 ggctgcttca ccacaccgaa ctccttttca gtgtctagct cagggaagct
1351 cttgctggtg aatgcacctc cgacagcttt ctgaacaaca ttagttgtga
1401 aattactaaa gctagacaaa tgatttattg ccttatcttc tagtggttca
1451 aattcaaaca tcacagtgtc actggtcttc atggacactg gcagatcagt
1501 cctttcaatc ccccagaacc aaagagttct agagatgaca cagttctgca
1551 ctgagctgtc atcaacagac acggacacct gaagattatg cttatcctcc
1601 aaagccagaa aatttgctag agaacccaag acagcaaagt tcttgctaat
1651 tgggtagcga acctctacct caacttgatc tgaggggttc acataagact
1701 tatctataat gcggagggta gtaattccac tggctctacc ctttatccca
1751 atccagacca tagcaaaagt tgctactctg aaaaatggat aatgggtgag
1801 aggttgatga aaccaatatg gatcaacaag tatgttgaaa gttgctttcc
1851 tatgggcctt cacagaatag tcctgtttag ctatgaacat atcatactta
1901 ttcaccttga catctgagaa gctgaagggt tccaatccga gcattgtagc
1951 agcctggtca atcgtaaccc taccttggtt cagaggcctc ttggagagag
2001 ctagagattt cctattctta ttatcaactc tcttttgaga ctcctcacta
2051 aggtcgtcat agagtacctt actttttgaa gtggacaaaa gtcgagacaa
2101 agccataatt aaagtatata ttagcttaat ctcaaaagat atgccctgac
2151 tttgtgt