Sequence of DPV Rice stripe virus
Rice stripe virus isolate SQ major non-capsid protein and VCP4 protein genes, complete cds.
ACC No: AF221835
Dated: 2003-05-15 | Length: 2157 | CRC: 877813387
!!NA_SEQUENCE 1.0
ID AF221835 standard; RNA; VRL; 2157 BP.
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AC AF221835;
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SV AF221835.3
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DT 03-FEB-2000 (Rel. 62, Created)
DT 15-MAY-2003 (Rel. 75, Last updated, Version 4)
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DE Rice stripe virus isolate SQ major non-capsid protein and VCP4 protein
DE genes, complete cds.
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KW .
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OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN [1]
RP 1-2157
RA Lin H., Wei T., Wu Z., Lin Q., Xie L.;
RT "Isolate variability of rice stripe virus: implication of origin of RSV in
RT China";
RL Unpublished.
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RN [2]
RP 1-2157
RA Wei T., Lin H., Xie L.;
RT "Molecular variability of RNA4 intergenic regions in rice stripe virus";
RL Unpublished.
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RN [3]
RP 1-2157
RA Yu Q., Wei T., Wu Z., Lin Q., Xie L.;
RT "Sequences analysis of RNA4 of two high-virulent isolates of rice stripe
RT tenuiviruses";
RL Unpublished.
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RN [4]
RP 1-2157
RA Lin H., Wei T., Wu Z., Lin Q., Xie L.;
RT ;
RL Submitted (06-JAN-2000) to the EMBL/GenBank/DDBJ databases.
RL Plant Protection, Institute of Plant Virology, Fujian Agricultural
RL University, Fuzhou, Fujian 350002, P.R.China
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RN [5]
RC Sequence update by submitter
RP 1-2157
RA Lin H., Wei T., Wu Z., Lin Q., Xie L.;
RT ;
RL Submitted (16-MAR-2000) to the EMBL/GenBank/DDBJ databases.
RL Plant Protection, Institute of Plant Virology, Fujian Agricultural
RL University, Fuzhou, Fujian 350002, P.R.China
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RN [6]
RC Sequence update by submitter
RP 1-2157
RA Wei T., Lin H., Xie L.;
RT ;
RL Submitted (14-MAY-2003) to the EMBL/GenBank/DDBJ databases.
RL Plant Protection, Institute of Plant Virology, Fujian Agricultural
RL University, Fuzhou, Fujian 350002, P.R.China
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DR SPTREMBL; Q9ICC6; Q9ICC6.
DR SPTREMBL; Q9ICE2; Q9ICE2.
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CC On May 14, 2003 this sequence version replaced gi:7249439.
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FH Key Location/Qualifiers
FH
FT source 1. .2157
FT /db_xref="taxon:12331"
FT /mol_type="genomic RNA"
FT /organism="Rice stripe virus"
FT /isolate="SQ"
FT /segment="4"
FT CDS 55. .591
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9ICC6"
FT /note="NCP; disease-specific protein; 20K protein"
FT /product="major non-capsid protein"
FT /protein_id="AAF30293.2"
FT /translation="MQDVQRTIEVSVGPIVGLDYTLLYDTLPETVSDNITLPDLKDPER
FT VTEDTKKLILKGCVYIAYHHPLETDTLFIKVHKHIPEFCHSFLSHLLGGEDDDNALIDI
FT GLFFNMLQPSLGGWITKNFLRHPNRMSKDQIKLLLDQIIKMAKAESSDTEEYEKVWKKM
FT PTYFESIIQPLLHKT"
FT CDS complement(1246. .2106)
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9ICE2"
FT /note="32K protein; putative 30K movement protein
FT superfamily member"
FT /product="VCP4 protein"
FT /protein_id="AAF43724.1"
FT /translation="MALSRLLSTLKSKVLYDDLSEESQKRVDNKNRKSLALSRRPLNQG
FT RVTIDQAATMLGLEPFSFSDVKVNKYDMFIAKQDYSVKAHRKATFNILVDPYWFHQPLT
FT HYPFFRVATFAMVWIGIKGRASGITTLRIIDKSYVNPSDQVEVEVRYPISKNFAVLGSL
FT ANFLALEDKHNLQVSVSVDDSSVQNCVISRTLWFWGIERTDLPVSMKTNDTVMFEFEPL
FT EDKAINHLSSFSNFTTNVVQKAVGGAFTSKSFPELDTEKEFGVVKQPKKIPITKKSKSE
FT VSVIM"
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SQ Sequence 2157 BP; 688 A; 435 C; 402 G; 632 T; 0 other;
AF221835 Length: 2157 May 20, 2003 09:38 Type: N Check: 47 ..
1 acacaaagtc cagggcattt gtacaacgat ccagcaattt aatcagaatc
51 gaagatgcaa gacgtacaaa ggacaataga agtttctgtt ggtcctattg
101 taggcctaga ttacactcta ttgtatgaca ctctgcctga gactgttagc
151 gataacatta ctctacctga tttgaaagat ccagagagag tcacggaaga
201 tactaagaag ctaatactca aaggctgtgt ttacatagca tatcatcacc
251 ccttggagac tgacaccctt ttcatcaaag ttcacaaaca tataccagag
301 ttttgtcact cattcctatc acacctttta gggggtgaag atgatgataa
351 tgctcttata gacattggtc tgtttttcaa tatgttgcaa ccctctttgg
401 gcggttggat aaccaagaat tttcttagac accctaatag gatgtctaag
451 gaccaaatta aactgctcct ggatcagatt attaagatgg ctaaggctga
501 gagctcagac acagaagagt atgagaaagt gtggaagaag atgccaactt
551 attttgaatc aattatccaa cctcttctac acaagacata gtttattgca
601 tatcacatat ttcacccatg agtgcttgca ttctagaagt ggagccagtt
651 tgggttgacc ttcttgtatg aaaatacgag tatattatag tctaaacaat
701 atacatgatg tttgtccact taagcttgac agtttgtaga taattgtgtg
751 tgattgagcg tgtgtgtata catgttaata tataactgtg cacaggtgtg
801 tagatataaa cacttgaaac aaataaattt atatattcct atcaactcat
851 atacatactt gtgagtctta gctcttctat atacacacat agaaacatga
901 gagtatcata ctagacccat tgcaaaaata ctaataactt tgtttttaca
951 atgtcaaaac taaaaattga aataccaaaa acatgagaaa atagaaaatc
1001 aaaaacaatg aatggtgcta agcaccacat ccggatgtgg tgcgtagcac
1051 cattttcata actttaatct ataatctact agtagcaaaa acacctatat
1101 gcatgaagtg catagcactc ttttatggat tgactactat gattacgtga
1151 atgcatagca ttctcttgga aaaaagcaga gcaaaacaga ccacatcaag
1201 tgcgtagcac tagatgttag catactccgg aactggttat ctcaactaca
1251 tgatgacaga aacttcagat tttgatttct ttgtgatagg tatcttcttt
1301 ggttgcttca ccacaccgaa ctccttctca gtgtctagct cagggaaact
1351 cttgctggtg aaagcacctc caacagcttt ctgaacaaca ttagtcgtaa
1401 aattactgaa gctggacaaa tggtttatgg ccttatcttc tagtggttca
1451 aactcaaaca tcacagtgtc attggtcttc atggacactg gcagatcagt
1501 cctctcaatc ccccagaacc aaagagttct agagatgaca cagttctgca
1551 ctgagctgtc atcaacagat actgacactt gaagattatg cttatcctcc
1601 aaagccagaa aattcgctag ggaacccaag acagcaaaat tcttgctaat
1651 cgggtagcga acctccacct caacttgatc tgaggggttc acataggact
1701 tgtctattat gcggagggtt gttattccac tagctctacc cttaattcca
1751 atccagacca tagcaaaagt tgccactcta aagaatgggt aatgggtgag
1801 aggttgatga aaccaatatg gatcaacaag tatgttgaaa gttgctttcc
1851 tatgggcctt cacagaatag tcctgtttgg ctatgaacat atcatacttg
1901 ttcaccttga catctgagaa gctgaagggt tccaatccaa gcattgtggc
1951 agcttggtca atcgtaaccc taccctggtt cagaggcctt ctggagagag
2001 ctagagattt cctattctta ttatcaactc tcttttggga ctcctcacta
2051 aggtcatcat agagtacctt actttttaaa gtggacaaaa gtcgagacaa
2101 agccataatt aaagtatata ttagcttaat ctcaaaagat atgccctgac
2151 tttgtgt