Sequence of DPV Raspberry ringspot virus

Raspberry ringspot virus isolate MX segment RNA2 polyprotein mRNA, partial cds.

ACC No: AF224697

Dated: 2003-05-29 | Length: 1075 | CRC: 1410683771

                !!NA_SEQUENCE 1.0
ID   AF224697   standard; mRNA; VRL; 1075 BP.
XX
AC   AF224697;
XX
SV   AF224697.1
XX
DT   05-SEP-2000 (Rel. 65, Created)
DT   29-MAY-2003 (Rel. 75, Last updated, Version 2)
XX
DE   Raspberry ringspot virus isolate MX segment RNA2 polyprotein mRNA, partial
DE   cds.
XX
KW   .
XX
OS   Raspberry ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Comoviridae;
OC   Nepovirus; Subgroup A.
XX
RN   [1]
RP   1-1075
RX   DOI; 10.1016/S0168-1702(00)00158-1.
RX   PUBMED; 10958983.
RA   Scott S.W., Zimmerman M.T., Jones A.T., Le Gall O.;
RT   "Differences between the coat protein amino acid sequences of English and
RT   Scottish serotypes of Raspberry ringspot virus exposed on the surface of
RT   virus particles";
RL   Virus Res. 68(2):119-126(2000).
XX
RN   [2]
RP   1-1075
RA   Scott S.W., Zimmerman M.T., Jones A.T., Le Gall O.;
RT   ;
RL   Submitted (14-JAN-2000) to the EMBL/GenBank/DDBJ databases.
RL   Plant Pathology and Physiology, Clemson University, P.O. Box 340377,
RL   Clemson, SC 29634-0377, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1075
FT                   /db_xref="taxon:12809"
FT                   /mol_type="mRNA"
FT                   /organism="Raspberry ringspot virus"
FT                   /isolate="MX"
FT                   /segment="RNA2"
FT   CDS             <1. .>1075
FT                   /codon_start=3
FT                   /db_xref="UniProtKB/TrEMBL:Q9E7L2"
FT                   /note="putative movement/helper protein"
FT                   /product="polyprotein"
FT                   /protein_id="AAG10242.1"
FT                   /translation="QDSIQSMGDFWKEFYAKDSGKKIPDSHKSRLANDPNKVGFTKSAL
FT                   FHKQPLSHSLAQTWANFRGTQDKADLVKVTMDMNIGKYTVRLPDAVRTTAGPLYIEWIN
FT                   LPRMSENSARKLAEVGWNNADICGVDLAVKSHIAVGTPVRVIISLVDGACSDMPTATMC
FT                   AFEVNLASQNNRSLNLPLLSLPFSRLLADLHDFQNRVKIACQFRDPEGFNVGTPMLSFS
FT                   SLEFSELKQTAFERNSLLRDSWSEIKKRACHGGGRCVASQGIVQTWEKGVNPPLKEYAP
FT                   LVLPPVPQPKRNFIDQQTGEVVQPFMQKSRSMRFKSPSDLWGRPSVDGGSTSTQLPPRG
FT                   SLRCDNVPGCAYEVDPL"
XX
SQ   Sequence 1075 BP; 283 A; 240 C; 254 G; 298 T; 0 other;

AF224697  Length: 1075  December 20, 2005 16:45  Type: N  Check: 6438  ..

       1  gtcaagattc catacagagt atgggtgatt tctggaaaga gttctatgcc
      51  aaggactcag gaaagaaaat acctgactct cataaatcga gactagccaa
     101  tgatcccaat aaagttggct tcactaagag tgcgttgttt cataaacagc
     151  ccctgtcgca ctctctcgct caaacttggg caaattttag gggaacccag
     201  gacaaggcgg acttggtcaa agtgaccatg gacatgaata ttggaaaata
     251  tacagtccgc cttcctgatg ctgtgaggac tactgcaggt ccactataca
     301  tagagtggat aaacctgcca cggatgtctg aaaattccgc acgcaagctt
     351  gctgaagttg ggtggaataa tgctgatatt tgtggtgtgg accttgcagt
     401  caaatcacat atagcagtgg gtacgcctgt gcgagttatt atttctctcg
     451  tagatggtgc ttgttcagat atgcccactg ccacaatgtg tgcttttgag
     501  gtaaacttag cttcgcagaa caatagatct ctaaatctac cactgctgag
     551  tttgcctttc tctagacttt tggccgatct acatgacttc caaaaccgtg
     601  taaagatcgc ttgtcaattt cgtgatcctg aaggatttaa cgtgggtaca
     651  cccatgttga gtttttcctc ccttgagttt tctgagctaa agcaaactgc
     701  ttttgagcgt aattctctac tcagggattc atggtctgaa attaagaagc
     751  gggcttgcca tggtggtggc cgttgtgttg cttcccaggg tattgtgcag
     801  acctgggaaa agggagttaa tcctcctctc aaagaatatg caccgctggt
     851  tttaccaccc gtccctcaac caaaaagaaa ttttatcgat caacagacgg
     901  gagaggtggt tcaacccttt atgcaaaagt cccgctccat gcgatttaaa
     951  tcgccatctg atttatgggg caggccctct gtagatgggg gatcaacatc
    1001  tacacagcta ccgccaaggg gctctttacg gtgtgacaat gtgcctggat
    1051  gtgcctatga ggtagatcca ctaca