Sequence of DPV Raspberry ringspot virus

Raspberry ringspot virus isolate Orr segment RNA2 polyprotein mRNA, partial cds.

ACC No: AF226157

Dated: 2003-05-29 | Length: 1075 | CRC: -1638820753

                !!NA_SEQUENCE 1.0
ID   AF226157   standard; mRNA; VRL; 1075 BP.
XX
AC   AF226157;
XX
SV   AF226157.1
XX
DT   05-SEP-2000 (Rel. 65, Created)
DT   29-MAY-2003 (Rel. 75, Last updated, Version 2)
XX
DE   Raspberry ringspot virus isolate Orr segment RNA2 polyprotein mRNA, partial
DE   cds.
XX
KW   .
XX
OS   Raspberry ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Comoviridae;
OC   Nepovirus; Subgroup A.
XX
RN   [1]
RP   1-1075
RX   DOI; 10.1016/S0168-1702(00)00158-1.
RX   PUBMED; 10958983.
RA   Scott S.W., Zimmerman M.T., Jones A.T., Le Gall O.;
RT   "Differences between the coat protein amino acid sequences of English and
RT   Scottish serotypes of Raspberry ringspot virus exposed on the surface of
RT   virus particles";
RL   Virus Res. 68(2):119-126(2000).
XX
RN   [2]
RP   1-1075
RA   Scott S.W., Zimmerman M.T., Jones A.T., Le Gall O.;
RT   ;
RL   Submitted (19-JAN-2000) to the EMBL/GenBank/DDBJ databases.
RL   Plant Pathology and Physiology, Clemson University, P.O. Box 340377,
RL   Clemson, SC 29634-0377, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1075
FT                   /db_xref="taxon:12809"
FT                   /mol_type="mRNA"
FT                   /organism="Raspberry ringspot virus"
FT                   /isolate="Orr"
FT                   /segment="RNA2"
FT   CDS             <1. .>1075
FT                   /codon_start=3
FT                   /db_xref="UniProtKB/TrEMBL:Q9E7K9"
FT                   /note="putative movement/helper protein"
FT                   /product="polyprotein"
FT                   /protein_id="AAG10243.1"
FT                   /translation="QDSIQSMGDFWKEFYAKDSGKKIPDSHKSRLANDPNKVGFTKSAL
FT                   FHKQPLSHSLAQTWANFRGTQDKADLVKVTMDMNIEKYTVRLPDAVRTTAGPLYIEWIN
FT                   LPRMSENSARKLAEVGWNNADICGVDLAVKSHIAVGTPVRVIISLVDGACSDMPTATMC
FT                   AFEVNLASQNNRSLNLPLLSLPFSRLLADLHDFQNRVKIACQFRDPEGFNVGTPMLSFS
FT                   SLEFSELKQTAFERNSLLRDSWSEIEKRACHGGGRCVASQGIVQTWEKEVNPPLKEYAP
FT                   LVLPPVPQPKRNFIDQQTGEVVQSFMQKSRSMRFQSPSDLWSRPSVDGGSTSTQPPSKG
FT                   SLRCDNVPGCAYEVDPL"
XX
SQ   Sequence 1075 BP; 277 A; 231 C; 254 G; 313 T; 0 other;

AF226157  Length: 1075  December 20, 2005 16:45  Type: N  Check: 1186  ..

       1  gtcaagattc catacagagt atgggtgatt tctggaaaga gttctatgcc
      51  aaggactcag gaaagaaaat acctgattct cataaatcga gactagccaa
     101  tgatcctaac aaagttggct tcactaagag tgcgttgttt cataaacagc
     151  ccctgtcgca ctctcttgct caaacttggg caaactttag gggtactcag
     201  gataaagcgg acttggtcaa ggtgaccatg gacatgaata ttgaaaaata
     251  tacagtccgc cttcctgatg ctgtgaggac tactgcaggt ccattataca
     301  tagagtggat aaacctgcca cggatgtctg aaaattccgc acgtaagctt
     351  gctgaagttg ggtggaataa tgctgatatt tgtggcgtgg accttgcagt
     401  taagtctcat atagcagtgg gtacacctgt gcgagttatt atttccctcg
     451  tagatggtgc ttgttcggat atgcccactg ctacaatgtg tgcttttgag
     501  gtgaacttag cttcgcagaa caatagatct ttaaatctac cactgctgag
     551  tttgcctttt tctaggcttt tggctgatct acatgacttc caaaatcgtg
     601  ttaagatcgc ttgtcaattt cgcgatcctg aaggatttaa cgtgggtaca
     651  cccatgttga gtttttcttc ccttgaattt tctgagctga agcaaactgc
     701  ttttgagcgt aattctttgc ttagggattc atggtctgaa attgagaagc
     751  gggcttgcca tggtggcggc cgttgtgttg cttcccaggg tattgtgcag
     801  acctgggaaa aggaggttaa tcctcccctc aaagaatatg caccgctggt
     851  tttaccaccc gtccctcaac caaaaagaaa ttttatcgac caacagacgg
     901  gagaggtggt tcaatctttt atgcaaaagt cccgctccat gcgatttcag
     951  tcaccatctg atttatggag caggccctct gtggatggag gttcaacatc
    1001  tacacaaccg ccatcaaagg gttctttacg gtgcgacaat gtacctggtt
    1051  gtgcctatga ggtagatcca ctaca