Sequence of DPV Chino del tomate virus
Chino del tomate virus-[H6] variant H6 coat protein (AV1), replication enhancer protein (AC3), transcriptional activator protein (AC2), replication initiator protein (AC1), and AC4 genes, complete cds.
ACC No: AF226665
Dated: 2005-04-15 | Length: 2635 | CRC: -2061587628
!!NA_SEQUENCE 1.0
ID AF226665 standard; genomic DNA; VRL; 2635 BP.
XX
AC AF226665;
XX
SV AF226665.1
XX
DT 03-MAR-2000 (Rel. 62, Created)
DT 15-APR-2005 (Rel. 83, Last updated, Version 4)
XX
DE Chino del tomate virus-[H6] variant H6 coat protein (AV1), replication
DE enhancer protein (AC3), transcriptional activator protein (AC2),
DE replication initiator protein (AC1), and AC4 genes, complete cds.
XX
KW .
XX
OS Chino del tomate virus-[H6]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2635
RA Brown J.K., Nelson M.R.;
RT "Transmission, host range, and virus-vector relationships of chino del
RT tomate virus, a whitefly-transmitted geminivirus from Sinaloa, Mexico";
RL Plant Dis. 72:866-869(1988).
XX
RN [2]
RP 1-2635
RA Brown J.K., Ostrow K.M., Idris A.M., Stenger D.C.;
RT "Chino del tomate virus: relationships to other begomoviruses and the
RT identification of A component variants that affect symptom expression";
RL Phytopathology 90:546-552(2000).
XX
RN [3]
RP 1-2635
RA Stenger D.C., Brown J.K.;
RT ;
RL Submitted (20-JAN-2000) to the EMBL/GenBank/DDBJ databases.
RL USDA-ARS, University of Nebraska at Lincoln, 344 Keim Hall, Lincoln, NE
RL 68583, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .2635
FT /chromosome="DNA A"
FT /db_xref="taxon:222453"
FT /mol_type="genomic DNA"
FT /note="variant H6"
FT /virion
FT /organism="Chino del tomate virus-[H6]"
FT /specific_host="tomato"
FT CDS 219. .974
FT /codon_start=1
FT /db_xref="GOA:Q9ICH3"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProt/TrEMBL:Q9ICH3"
FT /note="capsid protein"
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AAF36707.1"
FT /translation="MPKRDLPWRSIAGTSKVSRNANYSPRGGSGPRLNKAAEWVNRPMY
FT RKPRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHTGKVMCISDVTRGNGITHRVGKRF
FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT KNDLRDRFQVMHKFYGKVTGGQYASNEQAIVKRFWKVNNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSIMN"
FT CDS complement(971. .1369)
FT /codon_start=1
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProt/TrEMBL:Q9ICE0"
FT /note="Ren"
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /protein_id="AAF36710.1"
FT /translation="MDSRTGEFITVPQAENGVYIWEIENPLYFKMYRVEDLLYTRTRVY
FT HVQIRFNHNLRRALHLHKAYLNFQVWTTSMTASGSTYLARFRHLVIMYLDQLGVISINN
FT VIRAVHFATDRSYVNYVLENHSIKFKLY"
FT CDS complement(1116. .1505)
FT /codon_start=1
FT /db_xref="GOA:Q77N55"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProt/TrEMBL:Q77N55"
FT /note="TrAP"
FT /gene="AC2"
FT /product="transcriptional activator protein"
FT /protein_id="AAF36709.1"
FT /translation="MRSSSPSHPPSIKTAHRQAKKRAIRRRRIDLRCGCSIYFHIGCTG
FT HGFTHRGIHHCTSGGEWRVYLGDRKSPLFQDVQSGGSTVYENQGLPRSDTVQPQPEESV
FT ASPQSLPELPSLDDIDDSFWVDLFS"
FT CDS complement(1417. .2502)
FT /codon_start=1
FT /db_xref="GOA:Q9J049"
FT /db_xref="HSSP:1L5I"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProt/TrEMBL:Q9J049"
FT /note="Rep"
FT /gene="AC1"
FT /product="replication initiator protein"
FT /protein_id="AAF36708.1"
FT /translation="MPSVKRFKVSAKNYFLTYPQCSLSKEEALSQLQTLKTPVNKKYIK
FT ICRELHENGEPHLHALIQFEGKYQCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI
FT DKDGDTVEWGEFQIDGRSARGGQQSANDSYAKALNAGSVQAAMTVLKEEQPKDFVLHNH
FT NIRSNLERIFAKAPERWVPPFQLSSFTNVPDEMQEWADDYFRRSSAARPERPISIIVEG
FT DSRTGKTMWARALGPHNYLSGHLDFNPKVYSNEVEYNVVDDVAPHYLKLKHWKELLGAQ
FT KDWQSNCKYGKPVQIKGGIPAIVLCNPGEGASYKDFLNKEENASLRNWTIKNAIFITLT
FT SALYQDSAQASQEEGHQEEAD"
FT CDS complement(2088. .2351)
FT /codon_start=1
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProt/TrEMBL:Q9J048"
FT /gene="AC4"
FT /product="unknown"
FT /protein_id="AAF36711.1"
FT /translation="MRMGNRISTLSYNSKGSTSARITDSSIWSPQPGQHISIRTYRELN
FT PAPTSSPTSTRTEIQLSGENSRSTADQPEEVSNLLTIRMQRR"
XX
SQ Sequence 2635 BP; 644 A; 604 C; 632 G; 755 T; 0 other;
AF226665 Length: 2635 April 19, 2005 08:56 Type: N Check: 4994 ..
1 accggatggc cgcgcgattt tttccccctt tgtacgtgga cggtcgcgat
51 tgtctctttt cgcccgcacc ctcctcttta atttgaatta aagctttccg
101 ctttcgtctc gtccaatcat gtcacgtttg acgagattag atattttgaa
151 ctacttgggc tcgaagtagt tatcgttata aattaaagag gcttttggcc
201 caatgaattc aattcaaaat gcctaagcgc gatctaccat ggcgctcgat
251 cgcgggaact tcgaaggtga gccgcaatgc caattattcc cctcgtggtg
301 gaagtgggcc tagacttaac aaggccgctg aatgggttaa caggcccatg
351 tacaggaagc ccaggatcta ccggacgctg agaacgcccg acgttccaag
401 aggctgtgaa ggcccgtgta aggtccagtc ctatgaacag cgccacgata
451 tttcacatac aggtaaggtt atgtgcatat ccgacgtgac acgtggtaat
501 ggtatcaccc accgtgtggg taagcgtttc tgtgttaagt ctgtgtacat
551 tctcggtaag atctggatgg atgagaatat caagctgaag aaccacacga
601 atagtgttat gttctggttg gtcagggacc gtagaccgta tggcactccc
651 atggatttcg gtcaagtgtt caacatgttt gacaacgagc ccagtactgc
701 tacggtgaag aacgatcttc gcgatcgatt ccaggtcatg cacaaattct
751 atgggaaggt gacaggtgga cagtatgcca gcaacgagca ggcgatagtc
801 aagcgcttct ggaaggtcaa caatcatgtg gtctacaatc atcaagaggc
851 tggcaagtac gagaatcata cggagaacgc tttgttattg tacatggcat
901 gtacgcatgc ctctaaccct gtatatgcaa cgcttaagat ccggatctat
951 ttctatgatt cgatcatgaa ttaataaagt ttgaatttta ttgaatgatt
1001 ttccagtaca taattaacat acgatctgtc tgttgcgaaa tgaacagctc
1051 taattacatt gttaatggaa ataacgccta actggtctaa atacataata
1101 actaaatgtc taaacctagc taaataggtc gacccagaag ctgtcatcga
1151 tgtcgtccag acttggaagt tcaggtaggc tttgtggaga tgcaacgctc
1201 tcctcaggtt gtggttgaac cgtatctgaa cgtggtaaac cctggttctc
1251 gtatacagta gatcctccac tctgtacatc ttgaaataga ggggattttc
1301 tatctcccag atatacacgc cattctccgc ctgaggtaca gtgatgaatt
1351 cccctgtgcg tgaatccatg ccccgtgcag cctatatgga agtagatgga
1401 gcacccgcag cgtaaatcaa tccgcctcct cctgatggcc ctcttcttgg
1451 cttgcctgtg cgctgtcttg atagagggcg gatgtgaggg tgatgaagat
1501 cgcattcttg atggtccaat ttctcagtga tgcgttttcc tctttgttga
1551 ggaaatcttt atagctggca ccctcaccag gattgcaaag cacgattgct
1601 gggatacctc ctttaatttg aactggcttg ccgtacttgc aattggactg
1651 ccagtccttc tgggccccca gaagttcttt ccagtgcttt agctttagat
1701 agtgcggtgc gacgtcatca acgacgttat actccacttc gttcgagtag
1751 acctttgggt tgaagtccag atgtccacta aggtaattat gtgggcctaa
1801 tgccctagcc cacatcgtct tccctgtcct cgaatcacct tccacgatga
1851 tactaatagg tctctccggc cgcgcagcgg aactcctcct aaaataatca
1901 tccgcccact cttgcatctc gtccggaacg ttagtgaaag aggagagttg
1951 aaacggagga acccaccgtt ccggagcctt agcgaatatt ctctctaagt
2001 tggagcggat gttatgatta tgcaggacaa aatcttttgg ctgctcttcc
2051 ttcaaaaccg tcatggcagc ttgaacagat cctgcattca acgcctttgc
2101 atacgaatcg ttagcagatt gctgacctcc tctggctgat ctgccgtcga
2151 tctggaattc tccccactca actgtatctc cgtccttgtc gatgtaggac
2201 ttgacgtcgg agctggattt agctccctgt atgttcggat ggaaatgtgc
2251 tgaccgggtt ggggagacca gatcgaagaa tctgttattc gtgcactggt
2301 acttcccttc gaattgtatg agagcgtgga gatgcggttc cccattctca
2351 tgtaactctc tgcagatctt gatgtatttc ttgttaactg gcgtttttag
2401 ggtttgtaat tgggaaagtg cttcttcttt gctaagagag cactggggat
2451 atgtgagaaa atagtttttg gctgagactt tgaaacgttt aaccgatggc
2501 atttttgtaa taagaggggt gtactccgat tgagctctca aacttctgtg
2551 ctatgttttg gggtaaaggg gacaatatat actagaactc ttagtagcac
2601 tttagcgaca cgtggcggcc atccgatata atatt