Sequence of DPV Lettuce infectious yellows virus
Lettuce infectious yellows virus defective RNA 2 haplotype M18 coat protein minor and P26 genes, complete cds.
ACC No: AF229370
Dated: 2000-05-23 | Length: 3109 | CRC: -545045790
!!NA_SEQUENCE 1.0
ID AF229370 standard; RNA; VRL; 3109 BP.
XX
AC AF229370;
XX
SV AF229370.1
XX
DT 27-APR-2000 (Rel. 63, Created)
DT 23-MAY-2000 (Rel. 63, Last updated, Version 2)
XX
DE Lettuce infectious yellows virus defective RNA 2 haplotype M18 coat protein
DE minor and P26 genes, complete cds.
XX
KW .
XX
OS Lettuce infectious yellows virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC Closterovirus.
XX
RN [1]
RP 1-3109
RA Rubio L., Yeh H.H., Tian T., Falk B.W.;
RT "A heterogeneous population of defective RNAs is associated with Lettuce
RT infectious yellows virus (LIYV)";
RL Virology 271:205-212(2000).
XX
RN [2]
RP 1-3109
RA Rubio L., Yeh H.H., Tian T., Falk B.W.;
RT ;
RL Submitted (31-JAN-2000) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, University of California Davis, 1 Shields Ave., Davis, CA
RL 95616, USA
XX
DR SPTREMBL; Q9IZR4; Q9IZR4.
DR SPTREMBL; Q9IZR5; Q9IZR5.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3109
FT /chromosome="RNA 2"
FT /db_xref="taxon:31713"
FT /haplotype="M18"
FT /note="defective RNA segment"
FT /organism="Lettuce infectious yellows virus"
FT CDS 880. .2238
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9IZR5"
FT /note="CPm"
FT /product="coat protein minor"
FT /protein_id="AAF65744.1"
FT /translation="MLEAECDEVELTSRDVGDYLMFKTRITDNFTGDLTLNINTSNLIK
FT FKTCSFFIRYGDDKDRYELGWTSTSTSRSIFQHYKDGKYIRDFRIQDPFPILSGSTFPV
FT VISNIIANRVAFRMSRRLNNVIVDKLKNNIIEFLFVVYLDVDIGKIKPNTILKNLDLSS
FT LFIVFSNNGNNKINLPYEIELQTKDRGIVYTKMGNPISYNLFNKFEDLLDIETKGVDKP
FT EDKPKPVFDDKGKQPTDTVPPVDNGKPDISKPGEKQGDIDIASKFNNIVMAKLKAQSSS
FT DPLTKKQCDQLMLSLIKWFEKFGITKDNARLLIFQFGISFSTSKENLNNITNNIVVEND
FT KGGFVKILKIDYLDKLYGSIPESHTYNLERVLLRHYAQEILILLRSKVLEWPRKLARNK
FT GIFEQYAYMACDFFDTAELELTEAETTALTTVKSWTMNHYKKKRQIVNSSQLE"
FT CDS 2235. .2918
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9IZR4"
FT /product="P26"
FT /protein_id="AAF65745.1"
FT /translation="MNNFPEIFDDESTCDYDKEIDHQELSDTFWCLMDFISSKHGKSVA
FT DINSGMNTLINIRKSLNGSGKVVSITDSYNKTYFHSQRGLTNVDSRINIDILKIDFISI
FT IVDLQIIFRGLIYKDKGFLDSADLLDLDKKTTTRKFQEYFNILKIKIIEKIGMTKTFHF
FT NIDFRNTISPLDKQRKCSISSSHKKTNRLNDLNNYITYLNDNIVLTFRWKGVGFGGLSL
FT NDIKI"
XX
SQ Sequence 3109 BP; 1126 A; 482 C; 586 G; 915 T; 0 other;
AF229370 Length: 3109 December 21, 2001 14:57 Type: N Check: 2149 ..
1 ggtaatcaca attaccattg ggcgaaggcc aggtgtgccg taaacctaaa
51 atatgattgt gttacggatc ctactctttt gagtagttac attatgttat
101 gttaagatcc ttgcgtctac tcttggagaa tttcgatggc acttgagtga
151 cgtaagttac tttttctccc taaaatccaa aatcccaaaa atccaaattt
201 tagttaatag cagtagctgt cgcaaaccgt accctaccct aattaaaact
251 agactatgct gcgaatacta agagcggatt aaatctgctc gcttagagga
301 tttgtccaaa atcgttgtac gcgtcgacag gcacgatgct ctgagtgcta
351 atgatgttca aagttttaga gaagctatga taaacttcat gcgagacaaa
401 gaccccaaca gaaatcaacc tagtgacaaa ttgattattg ctatggaagt
451 tggagtttat caaatggtca taaatttggg cacttcggct aaattgggta
501 atgctaacaa tttagaattt acgatagctt acgaccagga aactaggaca
551 tataaggtcg cagattttgt gaattatatg cagtctagaa tgaggaacag
601 tccaaatgtt gttaggcaat atgcaagagc aatggaaaag acaattaaca
651 acataaggag tgctggaatc ataaacagca atggagtttt ggcagcgaaa
701 catggtgtgt tggcatctta cagaaactct tacagcgact ttgctgttgg
751 ttttggtaac gacaccactg atgctcaact cacttcgcta atgctagcta
801 gaaaacaagc attatgcaaa ggtgaaggtg gttcagtcga gcattacaat
851 actatgcagt tagctaacct taaacatcca tgttagaggc ggaatgtgat
901 gaagtagaac taacctccag agatgtcgga gattatttga tgttcaaaac
951 gagaataacc gataatttca ctggagattt aaccttgaat ataaacacct
1001 cgaacttaat caaattcaaa acttgtagtt tctttatacg ttatggagac
1051 gacaaggata ggtatgaatt gggttggact tcaacatcta catctagaag
1101 tatttttcaa cattataagg atggtaaata cattcgagat tttagaatac
1151 aagatccatt tccaatacta tcaggttcaa catttccagt agtgatttct
1201 aatataatag cgaatagagt tgcctttcgt atgagtagaa gattaaataa
1251 tgttattgtt gataagctta agaataacat tatagagttt ctatttgtag
1301 tatatttaga tgtggatatt gggaagatta aaccaaacac aatactcaaa
1351 aatttagatt tgtccagtct ttttatcgtt ttcagtaaca acggaaacaa
1401 taaaatcaat ctaccatatg agatagagct acagactaaa gatagaggca
1451 ttgtttacac aaaaatgggt aatcctatat cttataacct cttcaataag
1501 tttgaagatt tattagacat agaaaccaaa ggtgtcgata aacccgaaga
1551 caaacccaaa cctgtgtttg acgacaaagg caagcaaccc acggatacgg
1601 ttccccctgt tgacaatggc aagcccgaca taagcaaacc tggtgagaaa
1651 cagggagaca tagatattgc tagcaagttt aataatatag tcatggcaaa
1701 attgaaagct caatcttcat cagatccatt gacgaaaaag caatgtgatc
1751 aattgatgtt gagtctaatc aaatggtttg aaaaatttgg aatcacaaaa
1801 gacaatgccc gattgctgat atttcaattt ggtatatctt tttcgacttc
1851 aaaagaaaat cttaacaata tcactaacaa tattgttgta gagaatgaca
1901 aaggtgggtt tgtaaaaatt ttaaaaatag attacttgga caaactgtac
1951 ggttcgattc ctgagtcgca tacttacaat ttagaaagag ttctactaag
2001 acattatgct caagaaatct taatattact aagaagcaaa gtgttagaat
2051 ggcctaggaa attagcaaga aataaaggca ttttcgaaca atatgcctac
2101 atggcctgtg actttttcga caccgcagaa ttagaattga cggaggctga
2151 gaccacagct ttgacgacgg taaagtcttg gactatgaac cattataaga
2201 agaaaagaca gatagttaat agttcacaat tagaatgaat aattttcctg
2251 aaatttttga tgatgagtcc acatgcgact atgataaaga gatagatcac
2301 caagaactat cagatacctt ttggtgtttg atggatttca tctcttctaa
2351 acatgggaaa agtgtcgctg atataaattc agggatgaat actttgatta
2401 acattagaaa gagcctcaat ggaagtggta aagttgtgtc gataactgat
2451 agttacaata aaacttattt ccacagtcaa agaggattga ccaatgttga
2501 ctcaaggata aacatagata tattgaagat agatttcatt agtattattg
2551 tcgatcttca aataatattt agaggtttaa tttacaaaga taaaggtttt
2601 ctagatagtg cggacttgtt agatttagat aagaaaacca ctactagaaa
2651 atttcaagaa tatttcaata ttctaaaaat aaaaatcata gagaaaattg
2701 gaatgacaaa aacattccat ttcaatatag attttagaaa cacgatctct
2751 cctttagata agcaaaggaa atgttcaatt tcaagttctc ataagaaaac
2801 caacagattg aacgatctca ataattatat aacatatcta aatgataata
2851 ttgtgttgac atttagatgg aaaggagtag gattcggagg actatcatta
2901 aatgatataa aaatttaaaa cacaagcggg taagttggat aaggtaatat
2951 ccgcaaggtc gaatagggtt tgtattaatc agactatttg taaatcctta
3001 aaagagacat gaacgataat tcaatttgat cagagagtgg tgattgaatt
3051 attcgatgat aaatagtcta aaaccattta tcattctagt gtatctcgta
3101 tactagacc